View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2461_high_3 (Length: 377)

Name: NF2461_high_3
Description: NF2461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2461_high_3
NF2461_high_3
[»] scaffold0155 (2 HSPs)
scaffold0155 (5-377)||(25787-26168)
scaffold0155 (303-377)||(34314-34388)
[»] chr6 (10 HSPs)
chr6 (303-377)||(8507729-8507803)
chr6 (303-375)||(8548774-8548846)
chr6 (303-375)||(8625485-8625557)
chr6 (303-377)||(8843079-8843153)
chr6 (316-377)||(5082790-5082851)
chr6 (303-376)||(8647488-8647561)
chr6 (303-377)||(8527311-8527385)
chr6 (303-377)||(8541104-8541178)
chr6 (303-366)||(8627453-8627516)
chr6 (303-357)||(8514459-8514513)
[»] chr8 (1 HSPs)
chr8 (303-377)||(4538690-4538764)
[»] chr4 (3 HSPs)
chr4 (316-377)||(10779845-10779906)
chr4 (316-377)||(10973454-10973515)
chr4 (316-377)||(10782150-10782211)


Alignment Details
Target: scaffold0155 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 5 - 377
Target Start/End: Original strand, 25787 - 26168
Alignment:
Q  5 tgtcgaagaatatcaacatcttttgcgagtattgggcatatatcatttttatgcagactatcaatacaatcatcaatgtgttgcataacaaaacctattt 104  Q
    |||||||||||||||||||| ||||| ||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25787 tgtcgaagaatatcaacatcctttgcaagtattgggctagtatcatttttatgcagactatcaatacaatcatcaatgtgttgcataacaaaacctattt 25886  T
Q  105 gtgaagccatgtctggataatttttgagctccaaatctattttcgcacccaaaagcctaccgcgaatgctatcatcgccatcgaaatctattgcacaatg 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  25887 gtgaagccatgtctggataatttttgagctccaaatctattttcgcacccaaaagcctaccgcgaatgctatcatcgccatcgaaatctattgcacaacg 25986  T
Q  205 agtataatagtttcttaccgtaacatttctttgcaaattaatgacaagtttgtatgcaatatagaaattgtccttaaccacaccaatagtgtaatttg-- 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  25987 agtataatagtttcttaccgtaacatttctttgcaaattaatgacaagtttgtatgcaatatagaaattgtccttaaccacaccaatagtgtaatttgca 26086  T
Q  303 -------caagatctacattttttgctcctcctggctttgagttgaggagatttgaacaatatgaaggattggatgcttctt 377  Q
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26087 agatcaacaagatctacattttttgctcctcctggctttgagttgaggagatttgaacaatatgaaggattggatgcttctt 26168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 303 - 377
Target Start/End: Complemental strand, 34388 - 34314
Alignment:
Q  303 caagatctacattttttgctcctcctggctttgagttgaggagatttgaacaatatgaaggattggatgcttctt 377  Q
    |||||||||||  |||| ||| |||||| ||||||||||| |||||| | ||||||||||||||||  |||||||    
T  34388 caagatctacaccttttactcgtcctggttttgagttgagaagatttaagcaatatgaaggattgggggcttctt 34314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 303 - 377
Target Start/End: Original strand, 8507729 - 8507803
Alignment:
Q  303 caagatctacattttttgctcctcctggctttgagttgaggagatttgaacaatatgaaggattggatgcttctt 377  Q
    ||||||||||| ||||||||| |||||| ||||||||||| |||||||||||| ||||||||||||| |||||||    
T  8507729 caagatctacactttttgctcatcctggttttgagttgagaagatttgaacaaaatgaaggattggaggcttctt 8507803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 303 - 375
Target Start/End: Complemental strand, 8548846 - 8548774
Alignment:
Q  303 caagatctacattttttgctcctcctggctttgagttgaggagatttgaacaatatgaaggattggatgcttc 375  Q
    |||||||||||  ||||||||||||||||||||||||||| ||||  |||||||||||||||||||| |||||    
T  8548846 caagatctacaccttttgctcctcctggctttgagttgagaagatacgaacaatatgaaggattggaagcttc 8548774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 303 - 375
Target Start/End: Original strand, 8625485 - 8625557
Alignment:
Q  303 caagatctacattttttgctcctcctggctttgagttgaggagatttgaacaatatgaaggattggatgcttc 375  Q
    ||||||||||   ||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||    
T  8625485 caagatctacgccttttgctcctcctggctttgagttgagaagatatgaacaatatgaaggattggaagcttc 8625557  T

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Target: chr6; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 303 - 377
Target Start/End: Complemental strand, 8843153 - 8843079
Alignment:
Q  303 caagatctacattttttgctcctcctggctttgagttgaggagatttgaacaatatgaaggattggatgcttctt 377  Q
    |||||||||||  |||||||||||||| |||||||||||| |||||||||||||| | ||||||||| |||||||    
T  8843153 caagatctacaccttttgctcctcctgactttgagttgagaagatttgaacaatacgtaggattggaggcttctt 8843079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 316 - 377
Target Start/End: Complemental strand, 5082851 - 5082790
Alignment:
Q  316 ttttgctcctcctggctttgagttgaggagatttgaacaatatgaaggattggatgcttctt 377  Q
    ||||||||||||||||||||||||||| |||||||||||||||||  ||||||| |||||||    
T  5082851 ttttgctcctcctggctttgagttgagaagatttgaacaatatgattgattggaggcttctt 5082790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 303 - 376
Target Start/End: Original strand, 8647488 - 8647561
Alignment:
Q  303 caagatctacattttttgctcctcctggctttgagttgaggagatttgaacaatatgaaggattggatgcttct 376  Q
    |||||||||||  |||||| |||||| ||||||||||||| |||||||||||||||| ||||||||| ||||||    
T  8647488 caagatctacaccttttgcacctccttgctttgagttgagaagatttgaacaatatgtaggattggaggcttct 8647561  T

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Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 303 - 377
Target Start/End: Complemental strand, 8527385 - 8527311
Alignment:
Q  303 caagatctacattttttgctcctcctggctttgagttgaggagatttgaacaatatgaaggattggatgcttctt 377  Q
    |||||||||||  |||||| ||||||||||| || ||||| |||||||| ||||| |||||||||||||||||||    
T  8527385 caagatctacaccttttgcacctcctggcttcgaattgagaagatttgagcaatacgaaggattggatgcttctt 8527311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 303 - 377
Target Start/End: Original strand, 8541104 - 8541178
Alignment:
Q  303 caagatctacattttttgctcctcctggctttgagttgaggagatttgaacaatatgaaggattggatgcttctt 377  Q
    |||||||||||  |||||| ||||||||||| || ||||| |||||||| ||||| |||||||||||||||||||    
T  8541104 caagatctacaccttttgcacctcctggcttcgaattgagaagatttgagcaatacgaaggattggatgcttctt 8541178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 303 - 366
Target Start/End: Complemental strand, 8627516 - 8627453
Alignment:
Q  303 caagatctacattttttgctcctcctggctttgagttgaggagatttgaacaatatgaaggatt 366  Q
    |||||||||||  |||||| ||  |||||||||||||||| |||||||||||||||||||||||    
T  8627516 caagatctacaccttttgcaccaactggctttgagttgagaagatttgaacaatatgaaggatt 8627453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 357
Target Start/End: Complemental strand, 8514513 - 8514459
Alignment:
Q  303 caagatctacattttttgctcctcctggctttgagttgaggagatttgaacaata 357  Q
    |||||||||||  |||||| ||||||||||| |||||||| |||||||| |||||    
T  8514513 caagatctacaccttttgcacctcctggcttcgagttgagaagatttgagcaata 8514459  T

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Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 303 - 377
Target Start/End: Complemental strand, 4538764 - 4538690
Alignment:
Q  303 caagatctacattttttgctcctcctggctttgagttgaggagatttgaacaatatgaaggattggatgcttctt 377  Q
    |||||||| ||  ||||||||||||||||||||||||||| |||||||||||||||||  ||||||| |||||||    
T  4538764 caagatctgcaccttttgctcctcctggctttgagttgagaagatttgaacaatatgattgattggaggcttctt 4538690  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 316 - 377
Target Start/End: Original strand, 10779845 - 10779906
Alignment:
Q  316 ttttgctcctcctggctttgagttgaggagatttgaacaatatgaaggattggatgcttctt 377  Q
    ||||||||||||||||||||||||||| |||||| | |||||||||||||| || |||||||    
T  10779845 ttttgctcctcctggctttgagttgagaagatttaagcaatatgaaggatttgaggcttctt 10779906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 316 - 377
Target Start/End: Original strand, 10973454 - 10973515
Alignment:
Q  316 ttttgctcctcctggctttgagttgaggagatttgaacaatatgaaggattggatgcttctt 377  Q
    ||||||||||||||||||||||||||| |||||| | |||||||||||||| || |||||||    
T  10973454 ttttgctcctcctggctttgagttgagaagatttaagcaatatgaaggatttgaggcttctt 10973515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 316 - 377
Target Start/End: Original strand, 10782150 - 10782211
Alignment:
Q  316 ttttgctcctcctggctttgagttgaggagatttgaacaatatgaaggattggatgcttctt 377  Q
    |||||||| ||||| |||||||||||| |||||| | ||||||||||||||||| |||||||    
T  10782150 ttttgctcttcctgactttgagttgagaagatttaagcaatatgaaggattggaggcttctt 10782211  T

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