View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2461_high_4 (Length: 298)
Name: NF2461_high_4
Description: NF2461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2461_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-138; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 11 - 282
Target Start/End: Original strand, 6807954 - 6808225
Alignment:
| Q |
11 |
cataggtttactatgtggcttttatctatggggatgtctttcactctaacaactcttcttgttacttacagaatagcaatattaatggttaccccagatc |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6807954 |
cataggtttactatgtggcttttatctatggggatgtctttcactctaacaactcttcttgttacttacagaatagcaatattaatggttaccccagatc |
6808053 |
T |
|
| Q |
111 |
ctgtatatagtattaatgagaatttactttcaacggtgcttaaaatttggattggattgttttccttctcgtgtttgctactcactctgcgtattgttat |
210 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| |||| |
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| T |
6808054 |
ctgtatatagtattaatgagaaattactttcaacggtgcttaaaatttggattggattgttttccatctcgggtttgttactcactctgcgtattcttat |
6808153 |
T |
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| Q |
211 |
ttggacaattaatgattactatctcaataaaggtaaaggtcaatcaaaaggaaacaactccaccgaagattc |
282 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
6808154 |
ttggacaattaatgattactatctcaataaaggtgaaggtcaatcaaaaggaaacaactccaccgaagattc |
6808225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 11 - 227
Target Start/End: Original strand, 6835893 - 6836109
Alignment:
| Q |
11 |
cataggtttactatgtggcttttatctatggggatgtctttcactctaacaactcttcttgttacttacagaatagcaatattaatggttaccccagatc |
110 |
Q |
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||||||||||||||||||||||| ||||| | |||| ||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
6835893 |
cataggtttactatgtggcttttttctattagcatgtgtttcactctcacatctcttcttgttacttaccgaatagcaatattaatggttaccccagatc |
6835992 |
T |
|
| Q |
111 |
ctgtatatagtattaatgagaatttactttcaacggtgcttaaaatttggattggattgttttccttctcgtgtttgctactcactctgcgtattgttat |
210 |
Q |
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| T |
6835993 |
ctgtctgggctgataatgaggttttactttcaacattgcttcgtatttggattggattgttttctttctcgggtttcttactcacactgcgtattattat |
6836092 |
T |
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| Q |
211 |
ttggacaattaatgatt |
227 |
Q |
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|||| ||||| ||||| |
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| T |
6836093 |
ttggggaattagtgatt |
6836109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 114
Target Start/End: Original strand, 6633942 - 6634045
Alignment:
| Q |
11 |
cataggtttactatgtggcttttatctatggggatgtctttcactctaacaactcttcttgttacttacagaatagcaatattaatggttaccccagatc |
110 |
Q |
| |
|
||||||||||||||||||||||| ||||| | |||| ||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||| || |
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| T |
6633942 |
cataggtttactatgtggcttttttctattagcatgtgtttcactctcacatctcttcttgttacttaccgaatagcaatattaatggttaccccagttc |
6634041 |
T |
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| Q |
111 |
ctgt |
114 |
Q |
| |
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|||| |
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| T |
6634042 |
ctgt |
6634045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 11 - 227
Target Start/End: Original strand, 6632732 - 6632948
Alignment:
| Q |
11 |
cataggtttactatgtggcttttatctatggggatgtctttcactctaacaactcttcttgttacttacagaatagcaatattaatggttaccccagatc |
110 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||| ||||||||| ||| ||||||||||||||||| |||||| || |||| ||||||||||| |
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| T |
6632732 |
cataggtttactatgtggcttgtatctatagggatgtgtttcactctcacatctcttcttgttacttacgacatagcagtaggaatgattaccccagata |
6632831 |
T |
|
| Q |
111 |
ctgtatatagtattaatgagaatttactttcaacggtgcttaaaatttggattggattgttttccttctcgtgtttgctactcactctgcgtattgttat |
210 |
Q |
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| | | | || | |||| ||||||||| ||||| | |||||||| |||||||||||||||||| ||||| ||||||| ||||||||| |||| |
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| T |
6632832 |
ttctctgggatgatacgttggattttctttcaacgttgctttatatttggatgggattgttttccttctcgggtttgttactcacactgcgtattattat |
6632931 |
T |
|
| Q |
211 |
ttggacaattaatgatt |
227 |
Q |
| |
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|||| ||||| ||||| |
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| T |
6632932 |
ttggggaattagtgatt |
6632948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 234 - 282
Target Start/End: Original strand, 6636336 - 6636384
Alignment:
| Q |
234 |
tcaataaaggtaaaggtcaatcaaaaggaaacaactccaccgaagattc |
282 |
Q |
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||||||||||| ||||||| |||||||||||| |||||||||||||||| |
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| T |
6636336 |
tcaataaaggtgaaggtcagtcaaaaggaaaccactccaccgaagattc |
6636384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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