View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2461_low_1 (Length: 601)
Name: NF2461_low_1
Description: NF2461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2461_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 530; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 1 - 594
Target Start/End: Complemental strand, 8792617 - 8792026
Alignment:
| Q |
1 |
ttctacaaacaatattgttcacaagcaaggtataattttttgtcataccaaaattacaagggttgtaatctatctacagaatgcaggacaatgatataga |
100 |
Q |
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| T |
8792617 |
ttctacaaacaatattgttcacaagcaaggtataattttttgtcataccaaaattacaagggttgtaatctatctacagaatgcaggacaatgatataaa |
8792518 |
T |
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| Q |
101 |
atatgctgctgcacaaagtggaacttgttatcgatgcaagtgaaaataaatcaatagacttcaacattccattgctctgccttcttcagcgatctcttgt |
200 |
Q |
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| T |
8792517 |
atatgctgctgcacaaagtggaacttgttatcgatgcaagtgaaaataaatcaatagacttcaacattccattgctctgccttcttcagcgatctcttgt |
8792418 |
T |
|
| Q |
201 |
actcaatccaatcaatacctacaacacataacaaacacaacatgatgactatagtttctctgattcttgaatnnnnnnntttgatagacagatgttagta |
300 |
Q |
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| T |
8792417 |
actcaatccaatcaatacctacaacacataacaaacacaacatgatgactatagtttctctgattcttgaataaaaaa-tttgatagacagatgttagta |
8792319 |
T |
|
| Q |
301 |
ttttctccttcttcaaggtttgaattcaatccttctaaccattagctgaaaccagttgagctatccaaaaccccctctatgcttcatgtaataaaaattc |
400 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
8792318 |
ttttttccttcttcaaggtttgaattcaatccttctaaccattagctcaa--cagttgagctatccaaacccccctctatgcttcatgtaataaatattc |
8792221 |
T |
|
| Q |
401 |
aaa-tgtttttcttaccgtctttggcagcgagtgaaaccattatgtcatcaattcccttttccattcctttcagtccacacatgtaaacaaaagtgttgt |
499 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8792220 |
aaaatgtttttcttaccgtctttggcagcgagtgaaaccattatgtcatcaattcccttttccattcctttcagtccacacatgtaaacaaaagtgttgt |
8792121 |
T |
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| Q |
500 |
ctttcttcagtaattcccacaactcttctgcatattgagccattctggtttgaatgtacattttctctcctttgtcgtttacttgttctctgctc |
594 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8792120 |
ctttcttcagtaattcccacaactcttctgcatattgagccattctggtttgaatgtacattttctctcctttgtcgtttacttgttctctgctc |
8792026 |
T |
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