View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2461_low_11 (Length: 215)
Name: NF2461_low_11
Description: NF2461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2461_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 6816374 - 6816556
Alignment:
| Q |
16 |
cacagatgctatagatgtgaagagtgtagtcaaccctacaagaagccttcttggtaagtccacaacaaaatctttttcttcaaaccgagatgtgagtatc |
115 |
Q |
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| T |
6816374 |
cacagatgctatagatgtgaagagtgtagtcaaccctacaagaagccttcttggtaagtccacaacaaaatctttttcttcaaacctagatgtgagtatc |
6816473 |
T |
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| Q |
116 |
gnnnnnnncgaaacaagggctgtgacagagaagcaaagtgcaacaagtgatgctgcagcatagagtttgaaagcaggttcttt |
198 |
Q |
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| T |
6816474 |
gaaagaaacgaaacaagagctgtgacagagaagcaaagtgcaacaagtgatgctgcagcatagagtttgtaagcaggttcttt |
6816556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 16 - 192
Target Start/End: Original strand, 6830802 - 6830978
Alignment:
| Q |
16 |
cacagatgctatagatgtgaagagtgtagtcaaccctacaagaagccttcttggtaagtccacaacaaaatctttttcttcaaaccgagatgtgagtatc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
6830802 |
cacagatgctatagatgtgaagagtgtagtcaaccctacaagaagctttcttggtaagtcaataacaaaatctttttcttcaaaccgagatgtgagtatg |
6830901 |
T |
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| Q |
116 |
gnnnnnnncgaaacaagggctgtgacagagaagcaaagtgcaacaagtgatgctgcagcatagagtttgaaagcagg |
192 |
Q |
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| T |
6830902 |
gaaagaaacaaaacaagggctgtgacagaggagcaaagtgcaacaagtgatgctacagcatagagtttgaaagcagg |
6830978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 17 - 192
Target Start/End: Original strand, 6808414 - 6808589
Alignment:
| Q |
17 |
acagatgctatagatgtgaagagtgtagtcaaccctacaagaagccttcttggtaagtccacaacaaaatctttttcttcaaaccgagatgtgagtatcg |
116 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||| |||||| ||||||| ||||||||| || ||||||| |
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| T |
6808414 |
acagatgctatagatgtgaagagtgtagtcaaccctagaagaagcttttttggtaagtccacaagaaaatccttttcttgaaaccgagacgttagtatcg |
6808513 |
T |
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| Q |
117 |
nnnnnnncgaaacaagggctgtgacagagaagcaaagtgcaacaagtgatgctgcagcatagagtttgaaagcagg |
192 |
Q |
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| T |
6808514 |
aaagaaacataacaagagccatgacagaggagcaaagtgcaacaagtgatgctacagcatatagtttgaaaacagg |
6808589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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