View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2461_low_2 (Length: 535)
Name: NF2461_low_2
Description: NF2461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2461_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 13 - 518
Target Start/End: Complemental strand, 38504516 - 38504013
Alignment:
| Q |
13 |
aatattaacaggcattaacttgggaattggattccctgaagtcgggtatcctccatcaagcgatccaagccatctgatctttgatcgaacaactccttac |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
38504516 |
aatattaacaggcattaacttgggaattggattccctgaagtcgggtatcctccatcaagcgatccaagccatctgatctttgatcgaacaattccttac |
38504417 |
T |
|
| Q |
113 |
atgctgactacgtgactgtgtggattccctgactgcagagaatctgagtgttgctggatatactcaaagccacaaagtttgcaagaaagaaacactagat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38504416 |
atgctgactacgtgactgtgtggattccctgactgcagagaatctgagtgttgctggatatactcaaagccacaaagtttgcaagaaagaaacactagat |
38504317 |
T |
|
| Q |
213 |
aacgtcctaaactaacctgagcaaatacaaatggccccccatctctcatcctaagagcgtcccgctccatgacacccaagtcagctccaattgcttgtgc |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
38504316 |
aacgtcctaaactaacctgagcaaatacaaatggccccccatctctcatcctaagagcatcccgctccatgacacccaagtcagctccaattgcttgtgc |
38504217 |
T |
|
| Q |
313 |
aaggtcagtcttgtttatcacctgaaattaagtccaatcagttccataatcatcaaattcnnnnnnnnnnnnnnnnnnnnnnttgtatatagacagattt |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
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| T |
38504216 |
aaggtcagtcttgtttatcacctgaaattaagtccaattagttccataatcatcaaattc--aaaaataaaatgaaaaaaaattgtatatagacagattt |
38504119 |
T |
|
| Q |
413 |
atgcatgccagaggtagttttgcgtatagcacttacaaggagatcagcttgtgtgattccaggaccacctttcctaggaattttatcaccaccagataca |
512 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38504118 |
atgcatgccagagatagttttgcgtatagcacttacaaggagatcagcttgtgtgattccaggaccacctttcctaggaattttatcaccaccagataca |
38504019 |
T |
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| Q |
513 |
tctatt |
518 |
Q |
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|||||| |
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| T |
38504018 |
tctatt |
38504013 |
T |
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