View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2461_low_3 (Length: 452)
Name: NF2461_low_3
Description: NF2461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2461_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-153; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 100 - 445
Target Start/End: Original strand, 2267319 - 2267663
Alignment:
| Q |
100 |
aagagagtattcaattctttcttttgnnnnnnnnnnttacattaattcatccctcatacatgaaaatatttcataaatgattgaagacatcgtttataat |
199 |
Q |
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| T |
2267319 |
aagagagtattcaattctttcttttgaaaaaaaaa-ttacatttattcatcccttatacatgaaagtatttcataaatgattgaagacatcgtttataat |
2267417 |
T |
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| Q |
200 |
taaagatcaatactaatttagactctaaaacagaaaaatccgtgaacaaagtgtcacctaatcagagaggcgtgatatatgtgatatctcttcatgtgct |
299 |
Q |
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| T |
2267418 |
taaagatcaatactaatttagactctaaaacagaagaatccgtgaacaaagtgtcacctaatcagagaggcttgatatatgtgatatctcttcatgtgct |
2267517 |
T |
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| Q |
300 |
ggtatacgagttacaattgtgacaccaggagataatgcattgactgtcatagtagttgattggaaccgaaacacgaatctgtaattctattcagtaagaa |
399 |
Q |
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| T |
2267518 |
ggtatacgagttacagttgtgacaccaggagacaatgcattgactgtcatagtagttgattggaactgaaacacgaatctgtaattctattcagtaagaa |
2267617 |
T |
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| Q |
400 |
gagactgaatccaaattatttcacttgttctagtggctagtctctg |
445 |
Q |
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| T |
2267618 |
gagactgaatccaaattatttcacttgttccagtggctagtctctg |
2267663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 315 - 439
Target Start/End: Complemental strand, 650638 - 650519
Alignment:
| Q |
315 |
attgtgacaccaggagataatgcattgactgtcatagtagttgattggaaccgaaacacgaatctgtaattctattcagtaagaagagactgaatccaaa |
414 |
Q |
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| T |
650638 |
attgtgacacgaggagacaatgcattgactgtcatagtagttgattggaactgaaacacgaacctgta-----attcagtaagaagagactgaatccaaa |
650544 |
T |
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| Q |
415 |
ttatttcacttgttctagtggctag |
439 |
Q |
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| T |
650543 |
ttatttcacttgttcttatggctag |
650519 |
T |
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