View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2461_low_9 (Length: 238)
Name: NF2461_low_9
Description: NF2461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2461_low_9 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 103 - 238
Target Start/End: Complemental strand, 11225837 - 11225702
Alignment:
| Q |
103 |
aggaataaatattattgtttatatatgtataatgagaaaga------tatcaagtcactaaaccatgacataaagtatgatcgatgacattgagaaaacn |
196 |
Q |
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| T |
11225837 |
aggaataaatattattgtttatat--gtataatgagaaagagaaagatatcaagtcactaaaccatgacataaagtat----gatgacattgagcaaaca |
11225744 |
T |
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| Q |
197 |
nnnnnngcataattttgatgaagcagaatgagcataaccttt |
238 |
Q |
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| T |
11225743 |
aaaaaaacataattttgatgaagcagaatgagcataatcttt |
11225702 |
T |
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