View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2462_high_1 (Length: 813)
Name: NF2462_high_1
Description: NF2462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2462_high_1 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 605; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 605; E-Value: 0
Query Start/End: Original strand, 35 - 785
Target Start/End: Complemental strand, 33568877 - 33568114
Alignment:
| Q |
35 |
taccatctcttagcactaataacatttnnnnnnntattacaattttgtaacaaccatgttattggcacaagcaaatttttccgagtactaatctccttca |
134 |
Q |
| |
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||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
33568877 |
taccatctcttagcactaataacatttaaaaaaatattataattttgtaacaaccatgttattggcgcaagcaaatttttccgagtactaatctccttca |
33568778 |
T |
|
| Q |
135 |
atttggtcagcaacatcaatttttccaataaaaaa-gtatgcaacaataatttgaactgtaagataatacccatgtctctggatcaaaagtagactctaa |
233 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||| ||||||||||||||||||| ||||||||| |
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| T |
33568777 |
atttggtcagcaacatcaatttttccaataaaaaaagtatgcaacagtaatttgaactgtaacataatacacatgtctctggatcaaaagcagactctaa |
33568678 |
T |
|
| Q |
234 |
taccatgttaagcttttatgttggaccgaattcatccttataaaaggaattaaagatgtcactctttataaactataattagaccacatacgatcgcgat |
333 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
33568677 |
taccatgttaagcttttatgttggaccgaattcatccttataaaaggaattaaagatgtcactctttataaactataattagaccacatacaatcgcgat |
33568578 |
T |
|
| Q |
334 |
tctttgtaatatcacagaaccacgacataaattaaaaaa-tcaagtactacttcactacttatagtaacnnnnnnnn-----------ggtgtactcaaa |
421 |
Q |
| |
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||||| |||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||| |
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|
| T |
33568577 |
tctttctaatatcaaagaaccgcgacataaattaaaaaaatcaagtactacttcactacttatagtaaaaaaaaaaaaaaaaaaaaaaggtctactcaaa |
33568478 |
T |
|
| Q |
422 |
taaatgatatattgttgcataatagtaaatatatataacctttgatgaacagaaaaaggcttatcaggtctaacataagcaagagcagcttttccaaagt |
521 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33568477 |
taaatgacatattgttgcataatagtaaatatatataacctttgatgaacagaaaaaggcttatcaggtctaacataagcaagagcagcttttccaaagt |
33568378 |
T |
|
| Q |
522 |
tcatagaacaagtattatcaggatgatgagaaatgaattctctgagaatttcttcaggaagcttaggtttctttaagcctttgtatgatgcagggctatt |
621 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33568377 |
tcatagaacaagtattatcaggatgatgagaaatgaattctctgagaatttcttcaggaagcttaggtttctttaagcctttgtatgatgcagggctatt |
33568278 |
T |
|
| Q |
622 |
cagctcttcaggtggattagcaagacctttgtggaaaattcccaacattttcttcttcttcttgtgattctacaccaaaatcttgaggtctaagaaaaat |
721 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
33568277 |
cagctcttcaggtggattagcaagacctttgtggaaaattcccaacattttcttcttcttcgtgtgattctacaccaaaatcttgaggtctaagaaaaat |
33568178 |
T |
|
| Q |
722 |
aactttgttaacttaggtattgaatacgaaggatttaaaataaaatggaagcagggtcattgat |
785 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33568177 |
aactttgtttacttaggtattgaatacgaaggatttaaaataaaatggaagcagggtcattgat |
33568114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 210; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 164 - 615
Target Start/End: Original strand, 21495215 - 21495684
Alignment:
| Q |
164 |
aaaaaagtatgcaacaataatttgaactgtaagataatacccatgtctctggatcaaaagtagactctaataccat-gttaagcttttatgttggaccga |
262 |
Q |
| |
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||||| ||||||||| ||||||||||||||| ||||||| ||||||| |||||||||| | |||| | ||||| ||||||||||| |||||||||| |
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| T |
21495215 |
aaaaaggtatgcaactgtaatttgaactgtaacataatacacatgtctttggatcaaaaccaaactccgacaccatctttaagcttttacgttggaccga |
21495314 |
T |
|
| Q |
263 |
attcatccttataaaaggaattaaagatgtcactctttataaactataattagaccacatacgatcgcgattctttgtaatatcacagaaccacgacata |
362 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||| |||||||||||| ||| |||||| ||| |||||||||||| |||||| |||| | |||||| |
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| T |
21495315 |
attcatcctcataaaaggaattaaagatgtcactcttcataaactataatcagaacacatatgattgcgattctttgtgatatcaaagaatcgtgacata |
21495414 |
T |
|
| Q |
363 |
aatt-aaaaaatcaagtactacttcactacttatagtaacnnnnnnnnggtgtactcaaataaatg---------------atatattgttgcataatag |
446 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||| |||||||| |
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| T |
21495415 |
aattaaaaaaatcaagtactacttcactacttatagtaacaaaaaaaaggtgtactaaaataaatgatttttttttgtcaaatatattgttacataatag |
21495514 |
T |
|
| Q |
447 |
taaatatatataacctttgatgaacagaaaaaggcttatcaggtctaacataagcaagagcagcttttccaaagttcatagaacaag--tattatcagga |
544 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| | |||| |
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| T |
21495515 |
taaatataaataacctttgatgaacagaaaaaggcttatcaggtctaacataagcaagagcaacttttccaaagttcatagaacaagtatattgtaagga |
21495614 |
T |
|
| Q |
545 |
tgatgagaaatgaattctctgagaatttcttcaggaagcttaggtttctttaagcctttgtatgatgcagg |
615 |
Q |
| |
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| |||||||||||||||||| ||| ||||||||||||||||||| ||| |||| | ||| ||||||||||| |
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| T |
21495615 |
taatgagaaatgaattctctaagagtttcttcaggaagcttagg-ttccttaaacatttatatgatgcagg |
21495684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 182; Significance: 6e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 6e-98
Query Start/End: Original strand, 164 - 612
Target Start/End: Complemental strand, 19025835 - 19025366
Alignment:
| Q |
164 |
aaaaaagtatgcaacaataatttgaactgtaagataatacccatgtctctggatcaaaagtagactctaataccatg-ttaagcttttatgttggaccga |
262 |
Q |
| |
|
||||| ||||||||| ||||||||||||||| ||||||| ||||||| |||||||||| |||||| | ||||| |||||||||||||||||||||| |
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| T |
19025835 |
aaaaaggtatgcaactgtaatttgaactgtaacataatacacatgtctttggatcaaaaccagactccgacaccatcattaagcttttatgttggaccga |
19025736 |
T |
|
| Q |
263 |
attcatccttataaaaggaattaaagatgtcactctttataaactataattagaccacatacgatcgcgattctttgtaatatcacagaaccacgacata |
362 |
Q |
| |
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||||||| | ||||||||||||||||||||||||||| |||||||||||| ||| |||||| ||| |||||||||||||||||| |||| | |||||| |
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|
| T |
19025735 |
attcatcttcataaaaggaattaaagatgtcactcttcataaactataatcagaacacatatgattacgattctttgtaatatcaaagaatcgtgacata |
19025636 |
T |
|
| Q |
363 |
aattaa-aaaatcaagtactacttcactacttatagtaac---nnnnnnnnggtgtactcaaataaatg---------------atatattgttgcataa |
443 |
Q |
| |
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|||||| ||||| ||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||| |
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|
| T |
19025635 |
aattaaaaaaattaagtactacttcactacttatagtaacaaaaaaaaaaaggtgtactaaaataaatggtttttttttgtcaaatatattgttgcataa |
19025536 |
T |
|
| Q |
444 |
tagtaaatatatataacctt---tgatgaacagaaaaaggcttatcaggtctaacataagcaagagcagcttttccaaagttcatagaacaagtattatc |
540 |
Q |
| |
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||||||||||| ||| |||| | |||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| | |
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| T |
19025535 |
tagtaaatataaatacccttcgataatgaacaggaaaaggcttatcaggt-taacataagcaagagcaacttttccaaagttcatagaacaagtattgt- |
19025438 |
T |
|
| Q |
541 |
aggatgatgagaaatgaattctctgagaatttcttcaggaagcttaggtttctttaagcctttgtatgatgc |
612 |
Q |
| |
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||||| |||||||||||||||||| ||| ||||||||||||||||||||||| || | | |||||||||||| |
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|
| T |
19025437 |
aggataatgagaaatgaattctctaagagtttcttcaggaagcttaggtttccttgaacatttgtatgatgc |
19025366 |
T |
|
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