View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2462_high_4 (Length: 464)

Name: NF2462_high_4
Description: NF2462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2462_high_4
NF2462_high_4
[»] chr4 (1 HSPs)
chr4 (71-457)||(49755780-49756174)
[»] chr1 (2 HSPs)
chr1 (109-273)||(39567287-39567451)
chr1 (160-272)||(29127098-29127210)


Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 71 - 457
Target Start/End: Original strand, 49755780 - 49756174
Alignment:
Q  71 ataatgtgatcgtgattgataattattttactggaaggaaagagaacgttgttcatcatcttggtaatcccaattttgaacttattagacatgatgttgt 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  49755780 ataatgtgatcgtgattgataattattttactggaaggaaagagaatgttgttcatcatattggtaatcccaattttgaacttattagacatgatgttgt 49755879  T
Q  171 tgaacctattcttcttgaagttgatcagatctatcacttggcttgccctgcttcccctgttcattacaagtttaatcctgtcaagaccatcatatccttt 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49755880 tgaacctattcttcttgaagttgatcagatctatcacttggcttgccctgcttcccctgttcattacaagtttaatcctgtcaagaccatcatatccttt 49755979  T
Q  271 ttccaa----atttatttattatttacatattgcatgatcaaaatttctaatccaaagcatgttttgcacgcgacaagtacacgcgtctgacac-atatg 365  Q
    ||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||    
T  49755980 ttccaaatttatttatttattatttacatattgcatgatcaaaatttctaatccaaagcatgttttgcacgcgacaagtacacgcgtctgacacaatttg 49756079  T
Q  366 a------ttacgttctattatataatttttcccaaattactaccattcttgacatgtaataaatgtaagtattgtgtcacacgtctgtgcctatgata 457  Q
    |      | |  |||||||||||||||||||||||||||||||||||||| |||||   |||||||||||||||||||||||||||||||||||||||    
T  49756080 acacatgtgattttctattatataatttttcccaaattactaccattcttaacatg---taaatgtaagtattgtgtcacacgtctgtgcctatgata 49756174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 109 - 273
Target Start/End: Complemental strand, 39567451 - 39567287
Alignment:
Q  109 aaagagaacgttgttcatcatcttggtaatcccaattttgaacttattagacatgatgttgttgaacctattcttcttgaagttgatcagatctatcact 208  Q
    |||||||||||| | |||||| |||||||||| |  ||||| |||||| |||| || || ||||| ||| ||||||||||||||||||||||||||||      
T  39567451 aaagagaacgttatgcatcattttggtaatccgagatttgagcttattcgacacgacgtcgttgagcctcttcttcttgaagttgatcagatctatcatc 39567352  T
Q  209 tggcttgccctgcttcccctgttcattacaagtttaatcctgtcaagaccatcatatcctttttc 273  Q
    | ||||| |||||||| ||||||||||||||||| || || ||||| || |||||||||||||||    
T  39567351 ttgcttgtcctgcttctcctgttcattacaagttcaaccccgtcaaaactatcatatcctttttc 39567287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 160 - 272
Target Start/End: Original strand, 29127098 - 29127210
Alignment:
Q  160 catgatgttgttgaacctattcttcttgaagttgatcagatctatcacttggcttgccctgcttcccctgttcattacaagtttaatcctgtcaagacca 259  Q
    |||||||||||||| || ||| | ||||| |||||||||||||||||  | || || |||||||| ||||||||||| |||| ||| ||| ||||||| |    
T  29127098 catgatgttgttgatccgattttgcttgaggttgatcagatctatcatcttgcctgtcctgcttcacctgttcattataagtataaccctatcaagacaa 29127197  T
Q  260 tcatatccttttt 272  Q
    |||||||||||||    
T  29127198 tcatatccttttt 29127210  T

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