View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2462_low_13 (Length: 264)
Name: NF2462_low_13
Description: NF2462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2462_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 5 - 140
Target Start/End: Complemental strand, 17442444 - 17442309
Alignment:
| Q |
5 |
aaaaattgttgaatatgcaaagacacgaaattatttcaagcagtttgttgaattccaaaacaattcttattatataacaaaaacatggttcagattatat |
104 |
Q |
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| T |
17442444 |
aaaaattgttgaatatgcaaagacacgaaattatttcaagcagtttgttgaattctaaaacaatttttattatataacaaaaacatggttcatattatat |
17442345 |
T |
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| Q |
105 |
aatccgatcaaatggtatattttagaaagaaacaaa |
140 |
Q |
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| T |
17442344 |
aatccgatcaaatagtatattttagaaagaaacaaa |
17442309 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 122
Target Start/End: Original strand, 11154408 - 11154445
Alignment:
| Q |
85 |
aaacatggttcagattatataatccgatcaaatggtat |
122 |
Q |
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| T |
11154408 |
aaacatggttcagattctataatccgagcaaatggtat |
11154445 |
T |
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