View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2462_low_14 (Length: 264)
Name: NF2462_low_14
Description: NF2462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2462_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 29 - 219
Target Start/End: Complemental strand, 30911205 - 30911015
Alignment:
| Q |
29 |
tatgcatactataatattaaaaaggaaaatattatcataacattattcaattaatatttagttaaatatagttttgtgtgtctgtcacatacattagctn |
128 |
Q |
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| T |
30911205 |
tatgcatactataatattaaaaaggaaaatattatcataatattattcaattaatatttagttaaatatagttttgtgtgtctgtcacatacattagcta |
30911106 |
T |
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| Q |
129 |
nnnnnngtttagcagcaagtcttgttgcatccgaattaattcgacccatatgagcaattggactaagcattgcagctgatcttgtcatatt |
219 |
Q |
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| T |
30911105 |
aaaaaagtttagcagcaagtcttgttgcatccgaattaattcgacccatatgagcaattggactaagcattgcagctgatcttgtcatatt |
30911015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 219
Target Start/End: Complemental strand, 11299926 - 11299752
Alignment:
| Q |
44 |
attaaaaaggaaaatattatcataacattattcaattaatat----ttagttaaatatagttttgtgtgtctgtcacatacattagctnnnnnnngttta |
139 |
Q |
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| T |
11299926 |
attaaaaagtaaaatattttcataatattattcaataaatatatatttagctaaatatagttt---gtgtct--cacatacatcagctaaaagaagttca |
11299832 |
T |
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| Q |
140 |
gcagcaagtcttgttgcatccgaattaattcgacccatatgagcaattggactaagcattgcagctgatcttgtcatatt |
219 |
Q |
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| T |
11299831 |
gcagcaagttttgttgccactgaagtaatgtgtctcatatgagcaattggacttaacaatgcagctgatcttgtgatatt |
11299752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 219
Target Start/End: Complemental strand, 11293937 - 11293802
Alignment:
| Q |
82 |
atatttagttaaatatagttttgtgtgtctgtcacatacattagctnnnnnnngtttagcagcaagtcttgttgcatccgaattaattcgacccatatga |
181 |
Q |
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| T |
11293937 |
atatatagctaaatatagttttgtgtatct--cacatacatcagctaacaaaatttcagcagcaagttttgttgcctttgaagtaatgtggctcatatga |
11293840 |
T |
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| Q |
182 |
gcaattggactaagcattgcagctgatcttgtcatatt |
219 |
Q |
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| T |
11293839 |
gcaattggacttaacaatgcagctgatcttgtgatatt |
11293802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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