View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2462_low_15 (Length: 251)
Name: NF2462_low_15
Description: NF2462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2462_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 30596753 - 30596989
Alignment:
| Q |
1 |
gtgggatgaagctcaaagatcaaaaaggggaatcagaacccctcaaacaaaggcacacaaaaatcaaagggttagaaaatcaaacccctaaaatcattac |
100 |
Q |
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|||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |
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| T |
30596753 |
gtgggatgaagctcaaagatacaaaaggggaatcggaacccctcaaacaaaggcacgcaaaaatcaaagggttagaaaaccaaacccctaaaatcattac |
30596852 |
T |
|
| Q |
101 |
ttcaataaacccagcttcctcagcaacacaaccctgacaactctttctctaccacaaatcaaaactccgttttctatattcacaaatctgagnnnnnnnt |
200 |
Q |
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|||||||||||||||||||||| ||||| |||| ||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||| | |
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| T |
30596853 |
ttcaataaacccagcttcctcatcaacataaccgtgacaaccgtttctctaccacaaatcaaaaatccgttttctatactcacaaatctgag-aaaaaat |
30596951 |
T |
|
| Q |
201 |
ttcaaatttctatcaaccttttctctatcctttcgttc |
238 |
Q |
| |
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|||||||||||||||||| ||||||| ||||||||||| |
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| T |
30596952 |
ttcaaatttctatcaaccctttctctgtcctttcgttc |
30596989 |
T |
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Back To:
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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 72 - 131
Target Start/End: Complemental strand, 7821412 - 7821353
Alignment:
| Q |
72 |
ttagaaaatcaaacccctaaaatcattacttcaataaacccagcttcctcagcaacacaa |
131 |
Q |
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|||||||| ||||||||||||||||||||||||| |||| || |||||||| |||||||| |
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| T |
7821412 |
ttagaaaaccaaacccctaaaatcattacttcaagaaactcaacttcctcatcaacacaa |
7821353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 14392011 - 14391967
Alignment:
| Q |
88 |
ctaaaatcattacttcaataaacccagcttcctcagcaacacaac |
132 |
Q |
| |
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|||||||||||||||||| |||| || |||||||||||||||||| |
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| T |
14392011 |
ctaaaatcattacttcaagaaactcaacttcctcagcaacacaac |
14391967 |
T |
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