View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2462_low_5 (Length: 433)
Name: NF2462_low_5
Description: NF2462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2462_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 48 - 385
Target Start/End: Complemental strand, 6148653 - 6148319
Alignment:
| Q |
48 |
tcatccaagtcatatatatgtgatatgttgtgaacagatgccatatacatatgatattgatacctcattttctcccaattttaactattnnnnnnnccta |
147 |
Q |
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| T |
6148653 |
tcatctaagtcatatatatgtgatatgttgtgaacagatgccatatacatatgatattgatacctcattttctcccaattttaactattaaaaaaaccaa |
6148554 |
T |
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| Q |
148 |
gatgactggtattttgccaagcacttaatttatggatctaatccaagataatatagaataagtaaatacatgaccatgtattannnnnnnnnnnnnnnaa |
247 |
Q |
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| T |
6148553 |
gatgactggtattttgccaagcacttaatttatggatctaatccaagataatatagaataagtaaatacatgaccatgtattatttttattttttt---a |
6148457 |
T |
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| Q |
248 |
taaatattatcagttgatcttaattaataatatcaaccttgtattgcttcaccatcgccattgtttcattatttttctattctccaaaaaataggcacac |
347 |
Q |
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| T |
6148456 |
taaatattatcagttgatcttaattaataatatcaaccttgtattgcttcaccatcgccattgtttcattatttttctattctccaaaaaataggcacac |
6148357 |
T |
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| Q |
348 |
ggaacttttcctccattgtttcttatggttttgttgct |
385 |
Q |
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| T |
6148356 |
ggatcttttactccattgtttcttatggttttgttgct |
6148319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 247 - 360
Target Start/End: Complemental strand, 6129404 - 6129278
Alignment:
| Q |
247 |
ataaatattatcagttgatcttaattaataatatcaaccttgtattgcttcaccatcgc-------------cattgtttcattatttttctattctcca |
333 |
Q |
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| T |
6129404 |
ataaatattatcagttgatcttaattaaaaatatcaaccttgtgttgcttcaccatcactagtgattctaaacaatgtttcattatttttctattctcca |
6129305 |
T |
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| Q |
334 |
aaaaataggcacacggaacttttcctc |
360 |
Q |
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| T |
6129304 |
aaaaataggcacacagattttttcctc |
6129278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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