View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2462_low_6 (Length: 376)
Name: NF2462_low_6
Description: NF2462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2462_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 7e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 17 - 227
Target Start/End: Original strand, 27371108 - 27371318
Alignment:
| Q |
17 |
taaatacatagtaaaatgttcaatcaattgtggtagctatggtgccgtaaacaaacctaaagaagtgttattggtgactgccgaaggtggtagagacggt |
116 |
Q |
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| T |
27371108 |
taaatacatagtaaaatgttgaatcaattgtggtagatatggtgccgaaaacaaacctaaagaggtattattggtgactgccgaaggtggtagagacggt |
27371207 |
T |
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| Q |
117 |
gaaggttgtagggacagtgactctaactcaattgttgaattatagaagcgataagtatcaaatcttaagcgacaacttggtttaacaacttctcctccta |
216 |
Q |
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| T |
27371208 |
gaaggttgtagcgacagtgactctaactcaattgttgaattgtagaagcgataagtatcaaatcttaagcgacaacttggtttaacaacttctcctccta |
27371307 |
T |
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| Q |
217 |
atcccatataa |
227 |
Q |
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||||||||||| |
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| T |
27371308 |
atcccatataa |
27371318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 230 - 347
Target Start/End: Original strand, 27371285 - 27371402
Alignment:
| Q |
230 |
tggtttaacaacttctcctcctaatcccatataaaatccaccgaatggatcaagattaatttctgatatagccgtatataagcagttagagcattgttgc |
329 |
Q |
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|||||||||||||||||||||||||||||||||| ||| | |||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
27371285 |
tggtttaacaacttctcctcctaatcccatataatatctattgaatggatcaggatcaatttctgagatagccgtatataagcagttagagcattgttgc |
27371384 |
T |
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| Q |
330 |
gaagacaaatcaggcatg |
347 |
Q |
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| T |
27371385 |
gaagacaaatcaggcatg |
27371402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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