View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2462_low_7 (Length: 356)

Name: NF2462_low_7
Description: NF2462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2462_low_7
NF2462_low_7
[»] chr7 (11 HSPs)
chr7 (28-343)||(17510009-17510324)
chr7 (28-343)||(17542890-17543205)
chr7 (28-343)||(17474525-17474840)
chr7 (28-343)||(17578374-17578689)
chr7 (74-228)||(4110265-4110418)
chr7 (102-235)||(38788070-38788203)
chr7 (260-335)||(38788964-38789039)
chr7 (102-232)||(6202346-6202476)
chr7 (253-335)||(45406686-45406768)
chr7 (164-253)||(42078952-42079043)
chr7 (258-340)||(43989666-43989748)
[»] chr8 (17 HSPs)
chr8 (33-335)||(18431422-18431723)
chr8 (83-256)||(45528191-45528364)
chr8 (102-235)||(15275942-15276074)
chr8 (102-235)||(15456311-15456443)
chr8 (102-235)||(43215482-43215615)
chr8 (74-211)||(13758937-13759074)
chr8 (115-255)||(15276761-15276901)
chr8 (115-255)||(15457130-15457270)
chr8 (257-313)||(14714616-14714672)
chr8 (201-256)||(14715283-14715338)
chr8 (74-232)||(36990307-36990464)
chr8 (153-254)||(760675-760776)
chr8 (90-147)||(38291332-38291389)
chr8 (90-168)||(19263274-19263352)
chr8 (122-227)||(38291798-38291903)
chr8 (255-311)||(18953369-18953425)
chr8 (74-186)||(23140510-23140622)
[»] chr3 (14 HSPs)
chr3 (45-335)||(12125371-12125661)
chr3 (102-235)||(14240504-14240637)
chr3 (255-342)||(11655403-11655490)
chr3 (122-235)||(9266735-9266848)
chr3 (102-233)||(9265297-9265428)
chr3 (177-254)||(11654666-11654744)
chr3 (90-255)||(6436844-6437009)
chr3 (276-316)||(34849856-34849896)
chr3 (102-229)||(6087136-6087263)
chr3 (90-168)||(50441-50519)
chr3 (144-246)||(9611703-9611805)
chr3 (258-340)||(20935017-20935099)
chr3 (299-340)||(42400444-42400485)
chr3 (90-246)||(9262778-9262934)
[»] chr4 (17 HSPs)
chr4 (83-254)||(42756730-42756901)
chr4 (254-342)||(50158170-50158258)
chr4 (102-235)||(13909809-13909942)
chr4 (102-235)||(24180606-24180739)
chr4 (42-235)||(28474760-28474953)
chr4 (260-335)||(28475656-28475731)
chr4 (145-254)||(11560217-11560325)
chr4 (90-255)||(24182416-24182581)
chr4 (102-230)||(12576850-12576978)
chr4 (276-317)||(48683180-48683221)
chr4 (185-253)||(285101-285169)
chr4 (253-340)||(13228676-13228763)
chr4 (201-256)||(37516417-37516472)
chr4 (257-340)||(42727943-42728026)
chr4 (258-319)||(24183445-24183506)
chr4 (158-235)||(35648561-35648638)
chr4 (255-335)||(11559498-11559578)
[»] scaffold1315 (1 HSPs)
scaffold1315 (83-233)||(1280-1430)
[»] scaffold1293 (1 HSPs)
scaffold1293 (83-233)||(641-791)
[»] chr2 (18 HSPs)
chr2 (102-235)||(45661121-45661254)
chr2 (102-235)||(45054003-45054136)
chr2 (102-235)||(45662566-45662698)
chr2 (101-231)||(6466940-6467070)
chr2 (255-313)||(29651782-29651840)
chr2 (104-228)||(45058390-45058515)
chr2 (103-255)||(14872721-14872873)
chr2 (260-340)||(19040681-19040761)
chr2 (74-186)||(41752880-41752992)
chr2 (163-234)||(5788087-5788158)
chr2 (158-253)||(45275964-45276059)
chr2 (278-336)||(13439396-13439454)
chr2 (298-336)||(19994500-19994538)
chr2 (255-329)||(36729293-36729367)
chr2 (128-246)||(41753962-41754080)
chr2 (299-340)||(3395514-3395555)
chr2 (255-340)||(5788889-5788974)
chr2 (260-340)||(39839110-39839190)
[»] scaffold1933 (1 HSPs)
scaffold1933 (145-230)||(552-637)
[»] chr6 (9 HSPs)
chr6 (122-255)||(11554338-11554471)
chr6 (102-211)||(24175786-24175895)
chr6 (122-255)||(4852807-4852940)
chr6 (103-246)||(34515077-34515221)
chr6 (260-340)||(7428507-7428587)
chr6 (121-256)||(24397914-24398048)
chr6 (255-312)||(24360161-24360218)
chr6 (74-138)||(18090618-18090682)
chr6 (254-318)||(20874199-20874263)
[»] chr1 (12 HSPs)
chr1 (90-246)||(39047632-39047786)
chr1 (77-246)||(31089445-31089615)
chr1 (103-255)||(16852890-16853042)
chr1 (260-340)||(20306755-20306835)
chr1 (260-340)||(40946503-40946583)
chr1 (192-235)||(27342218-27342261)
chr1 (298-340)||(1992406-1992448)
chr1 (298-340)||(30001802-30001844)
chr1 (86-247)||(43386370-43386531)
chr1 (303-335)||(8313455-8313487)
chr1 (253-317)||(43387115-43387179)
chr1 (276-340)||(49879847-49879911)
[»] scaffold0191 (3 HSPs)
scaffold0191 (103-235)||(5937-6070)
scaffold0191 (102-214)||(12225-12337)
scaffold0191 (258-335)||(5143-5220)
[»] scaffold0061 (1 HSPs)
scaffold0061 (74-179)||(45555-45660)
[»] scaffold0017 (1 HSPs)
scaffold0017 (74-179)||(153127-153232)
[»] scaffold0022 (1 HSPs)
scaffold0022 (257-313)||(126581-126637)
[»] scaffold0012 (2 HSPs)
scaffold0012 (258-318)||(96635-96695)
scaffold0012 (201-256)||(95949-96004)
[»] chr5 (2 HSPs)
chr5 (257-313)||(2260826-2260882)
chr5 (135-235)||(24541800-24541900)
[»] scaffold0169 (1 HSPs)
scaffold0169 (153-232)||(5142-5221)
[»] scaffold0074 (1 HSPs)
scaffold0074 (121-256)||(30837-30971)
[»] scaffold1312 (1 HSPs)
scaffold1312 (158-235)||(10-87)
[»] scaffold0050 (1 HSPs)
scaffold0050 (102-198)||(10567-10663)
[»] scaffold0159 (2 HSPs)
scaffold0159 (163-234)||(32460-32531)
scaffold0159 (255-340)||(33262-33347)
[»] scaffold1345 (1 HSPs)
scaffold1345 (258-340)||(1832-1914)
[»] scaffold1737 (1 HSPs)
scaffold1737 (254-318)||(530-594)
[»] scaffold0377 (1 HSPs)
scaffold0377 (164-253)||(12546-12637)


Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 28 - 343
Target Start/End: Original strand, 17510009 - 17510324
Alignment:
Q  28 caaaaataaaaatattcattatagtgtttggatttcagagagattttacaatggattgaatgatcacattcgaataagagaaaccccacaagtaagatgg 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17510009 caaaaataaaaatattcattatagtgtttggatttcagagagattttacaatggattgaatgatcacattcgaataagagaaaccccacaagtaagatgg 17510108  T
Q  128 acaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatatactcttgcatcaaaagtagaagtttaa 227  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17510109 acaccacatctccatccgaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatatactcttgcatcaaaagtagaagtttaa 17510208  T
Q  228 ctcacacacgacgcattaatatctctctcaacatctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatctctccagtaagtgt 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  17510209 ctcacacacgacgcattaatatctctctcaacatctactcttacataaaatgtgaaactttaactcaaatttgacacattaacatctctccagtaagtgt 17510308  T
Q  328 cagactctttgtgcct 343  Q
    ||||||||||||||||    
T  17510309 cagactctttgtgcct 17510324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 28 - 343
Target Start/End: Complemental strand, 17543205 - 17542890
Alignment:
Q  28 caaaaataaaaatattcattatagtgtttggatttcagagagattttacaatggattgaatgatcacattcgaataagagaaaccccacaagtaagatgg 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17543205 caaaaataaaaatattcattatagtgtttggatttcagagagattttacaatggattgaatgatcacattcgaataagagaaaccccacaagtaagatgg 17543106  T
Q  128 acaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatatactcttgcatcaaaagtagaagtttaa 227  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17543105 acaccacatctccatccgaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatatactcttgcatcaaaagtagaagtttaa 17543006  T
Q  228 ctcacacacgacgcattaatatctctctcaacatctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatctctccagtaagtgt 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  17543005 ctcacacacgacgcattaatatctctctcaacatctactcttacataaaatgtgaaactttaactcaaatttgacacattaacatctctccagtaagtgt 17542906  T
Q  328 cagactctttgtgcct 343  Q
    ||||||||||||||||    
T  17542905 cagactctttgtgcct 17542890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 28 - 343
Target Start/End: Original strand, 17474525 - 17474840
Alignment:
Q  28 caaaaataaaaatattcattatagtgtttggatttcagagagattttacaatggattgaatgatcacattcgaataagagaaaccccacaagtaagatgg 127  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  17474525 caaaactaaaaatattcattatagtgtttggatttcagagagattttacaatggattgaatgatcatattcgaataagagaaaccccacaagtaagatgg 17474624  T
Q  128 acaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatatactcttgcatcaaaagtagaagtttaa 227  Q
    ||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17474625 acaccacatctccatccgaaacctgaagatattaggtatatttgccatctcacaaatatgttgttcaatatatactcttgcatcaaaagtagaagtttaa 17474724  T
Q  228 ctcacacacgacgcattaatatctctctcaacatctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatctctccagtaagtgt 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  17474725 ctcacacacgacgcattaatatctctctcaacatctactcttacataaaatgtgaaactttaactcaaatttgacacattaacatctctccagtaagtgt 17474824  T
Q  328 cagactctttgtgcct 343  Q
    ||||||||||||||||    
T  17474825 cagactctttgtgcct 17474840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 28 - 343
Target Start/End: Complemental strand, 17578689 - 17578374
Alignment:
Q  28 caaaaataaaaatattcattatagtgtttggatttcagagagattttacaatggattgaatgatcacattcgaataagagaaaccccacaagtaagatgg 127  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  17578689 caaaactaaaaatattcattatagtgtttggatttcagagagattttacaatggattgaatgatcatattcgaataagagaaaccccacaagtaagatgg 17578590  T
Q  128 acaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatatactcttgcatcaaaagtagaagtttaa 227  Q
    ||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17578589 acaccacatctccatccgaaacctgaagatattaggtatatttgccatctcacaaatatgttgttcaatatatactcttgcatcaaaagtagaagtttaa 17578490  T
Q  228 ctcacacacgacgcattaatatctctctcaacatctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatctctccagtaagtgt 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  17578489 ctcacacacgacgcattaatatctctctcaacatctactcttacataaaatgtgaaactttaactcaaatttgacacattaacatctctccagtaagtgt 17578390  T
Q  328 cagactctttgtgcct 343  Q
    ||||||||||||||||    
T  17578389 cagactctttgtgcct 17578374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 74 - 228
Target Start/End: Original strand, 4110265 - 4110418
Alignment:
Q  74 tacaatggattgaatgatcacattcgaataagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggcc 173  Q
    |||||||| |||||| |||||||| ||||||||||||| |||||| |||||| |||||||||| | |||| ||||||| ||||||||| ||| ||||  |    
T  4110265 tacaatgg-ttgaataatcacatttgaataagagaaactccacaaataagattgacaccacatttccatctaaaaccttaagatattatgtaaattgatc 4110363  T
Q  174 atctcacaaatatgttgttcaatatatactcttgcatcaaaagtagaagtttaac 228  Q
    |||||||  | |||||| |||||||||||| ||||||  || |||| ||||||||    
T  4110364 atctcacttacatgttgctcaatatatactattgcattcaatgtagtagtttaac 4110418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 102 - 235
Target Start/End: Original strand, 38788070 - 38788203
Alignment:
Q  102 taagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatata 201  Q
    |||||||||| |||||| | |||| |||||||||||| ||| |||||  | |||| || ||||||||||| |||||||   |||||||| ||||||| ||    
T  38788070 taagagaaactccacaaatgagattgacaccacatcttcattcaaaattttaagacatcaggtatattggacatctcagttatatgttgctcaatattta 38788169  T
Q  202 ctcttgcatcaaaagtagaagtttaactcacaca 235  Q
    || |||| ||||| ||| ||| ||||||||||||    
T  38788170 cttttgcgtcaaatgtaaaaggttaactcacaca 38788203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 260 - 335
Target Start/End: Original strand, 38788964 - 38789039
Alignment:
Q  260 atctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatctctccagtaagtgtcagactct 335  Q
    |||||||||| |||| ||||||||| ||||| | | | || ||||||||||||||||||| |||||||||||||||    
T  38788964 atctactcttgcatacaatgtgaaattttaacttacacttaacacattaacatctctccattaagtgtcagactct 38789039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 102 - 232
Target Start/End: Complemental strand, 6202476 - 6202346
Alignment:
Q  102 taagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatata 201  Q
    |||||||||||| | || | |||| |||||  ||| | ||| ||||| || |||| |||| ||||||||| ||||||||  |||||||| | ||||| ||    
T  6202476 taagagaaaccctataaatgagattgacactgcattttcattcaaaatcttaagacattaagtatattggacatctcacttatatgttgcttaatattta 6202377  T
Q  202 ctcttgcatcaaaagtagaagtttaactcac 232  Q
    ||||||||||||| ||| ||| |||||||||    
T  6202376 ctcttgcatcaaatgtaaaaggttaactcac 6202346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 253 - 335
Target Start/End: Complemental strand, 45406768 - 45406686
Alignment:
Q  253 tctcaacatctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatctctccagtaagtgtcagactct 335  Q
    ||||||||||| ||||||||| |||||| ||| ||||| ||| | ||||||||||||||| |||||| ||||| | |||||||    
T  45406768 tctcaacatctcctcttacatcaaatgtcaaattttaactcacaattgacacattaacatttctccattaagtatgagactct 45406686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 164 - 253
Target Start/End: Original strand, 42078952 - 42079043
Alignment:
Q  164 tatattggccatctcacaaatatgttgttcaatatatactcttgcatcaaaagta--gaagtttaactcacacacgacgcattaatatctct 253  Q
    |||||||  ||||||||  | |||||| ||||||| ||||||||||||||| |||  ||||||||||||||||| ||| |||||| ||||||    
T  42078952 tatattgatcatctcacttacatgttgctcaatatctactcttgcatcaaatgtatagaagtttaactcacacatgacacattaacatctct 42079043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 340
Target Start/End: Complemental strand, 43989748 - 43989666
Alignment:
Q  258 acatctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatctctccagtaagtgtcagactctttgtg 340  Q
    ||||||||| || |||| ||| | ||| ||||| ||| | |||||||||||||||||||| | ||||||||||  ||||||||    
T  43989748 acatctactattgcatacaatataaaattttaactcacacttgacacattaacatctctcaattaagtgtcaggatctttgtg 43989666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 171; Significance: 9e-92; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 33 - 335
Target Start/End: Original strand, 18431422 - 18431723
Alignment:
Q  33 ataaaaatattcattatagtgtttggatttcagagagattttacaatggattgaatgatcacattcgaataagagaaaccccacaagtaagatggacacc 132  Q
    ||||||| | |||||||| |||||||||||||||| |||  |||||| ||||| || |||||||| ||| ||||||||||||||||||||||||||||||    
T  18431422 ataaaaaaaatcattataatgtttggatttcagagggatcctacaatagattggatcatcacatttgaacaagagaaaccccacaagtaagatggacacc 18431521  T
Q  133 acatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatatactcttgcatcaaaagtagaagtttaactcac 232  Q
    ||||||  |||  ||||||||||| |||||||||||||| ||||||| | |||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  18431522 acatctctatctcaaacctgaagacattaggtatattggtcatctcaaatatatgttgctcaatatatactcttgcatcaaaattagaagtttaactcac 18431621  T
Q  233 acacgacgcattaatatctctctcaacatctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatctctccagtaagtgtcagac 332  Q
    ||| ||| |||||| ||||||| |||| |||||||||||||||||||||||| ||||| ||| ||||||||||||| |||||||||| ||||||| ||||    
T  18431622 acatgacacattaacatctctcccaacgtctactcttacataaaatgtgaaa-tttaactcatatttgacacattatcatctctccattaagtgttagac 18431720  T
Q  333 tct 335  Q
    |||    
T  18431721 tct 18431723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 83 - 256
Target Start/End: Complemental strand, 45528364 - 45528191
Alignment:
Q  83 ttgaatgatcacattcgaataagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaa 182  Q
    |||||| |||||||| || ||||||||||||||||||| ||||  |||||| |||| || |||||| || |||| |||||||||||| | |||||||       
T  45528364 ttgaatcatcacatttgattaagagaaaccccacaagtgagatacacaccaaatcttcacccaaaatcttaagacattaggtatatttgtcatctcattt 45528265  T
Q  183 atatgttgttcaatatatactcttgcatcaaaagtagaagtttaactcacacacgacgcattaatatctctctc 256  Q
    |||||||| ||||||||||||| |||||| || || ||| ||||||||| ||| ||  |||||||||| |||||    
T  45528264 atatgttgctcaatatatactcgtgcatccaacgttgaaatttaactcatacatgatacattaatatccctctc 45528191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 102 - 235
Target Start/End: Original strand, 15275942 - 15276074
Alignment:
Q  102 taagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatata 201  Q
    |||||||||||| |||| | |||| |||||||||||| ||| | |||||| |||| |||||||||||||| ||||| ||  ||| |||| || |||| ||    
T  15275942 taagagaaaccc-acaaatgagattgacaccacatcttcattcgaaaccttaagacattaggtatattggacatcttacttatacgttgctcgatattta 15276040  T
Q  202 ctcttgcatcaaaagtagaagtttaactcacaca 235  Q
    ||||| ||||||| ||| ||| ||||||||||||    
T  15276041 ctcttacatcaaatgtaaaaggttaactcacaca 15276074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 102 - 235
Target Start/End: Original strand, 15456311 - 15456443
Alignment:
Q  102 taagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatata 201  Q
    |||||||||||| |||| | |||| |||||||||||| ||| | |||||| |||| |||||||||||||| ||||| ||  ||| |||| || |||| ||    
T  15456311 taagagaaaccc-acaaatgagattgacaccacatcttcattcgaaaccttaagacattaggtatattggacatcttacttatacgttgctcgatattta 15456409  T
Q  202 ctcttgcatcaaaagtagaagtttaactcacaca 235  Q
    ||||| ||||||| ||| ||| ||||||||||||    
T  15456410 ctcttacatcaaatgtaaaaggttaactcacaca 15456443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 102 - 235
Target Start/End: Original strand, 43215482 - 43215615
Alignment:
Q  102 taagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatata 201  Q
    |||||| ||||||| || | |||| ||||| |||| | ||| |||||||  |||| |||| ||||||||| ||||||||  |||||||| | ||||| ||    
T  43215482 taagaggaaccccataaatgagattgacactacattttcattcaaaaccgtaagacattaagtatattggacatctcacttatatgttgcttaatattta 43215581  T
Q  202 ctcttgcatcaaaagtagaagtttaactcacaca 235  Q
    ||||||||||||| ||| ||| ||||||||||||    
T  43215582 ctcttgcatcaaatgtaaaaggttaactcacaca 43215615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 74 - 211
Target Start/End: Complemental strand, 13759074 - 13758937
Alignment:
Q  74 tacaatggattgaatgatcacattcgaataagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggcc 173  Q
    |||||||  |||||| |||| |||||  |||||||| |||||||| | |||| |||||||||| |  | ||||||||| |||| ||||||||||  || |    
T  13759074 tacaatgagttgaatcatcatattcggctaagagaatccccacaaatgagattgacaccacattttgacccaaaaccttaagacattaggtatacgggtc 13758975  T
Q  174 atctcacaaatatgttgttcaatatatactcttgcatc 211  Q
    ||||||| ||||||||||| || |  ||||||||||||    
T  13758974 atctcactaatatgttgtttaacaactactcttgcatc 13758937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 115 - 255
Target Start/End: Original strand, 15276761 - 15276901
Alignment:
Q  115 acaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatatactcttgcatcaaa 214  Q
    |||||| |||| |||||||||||| || | ||||||| || | |||| ||||||| | |||||||||   |||||  |||||||||||| |||| || ||    
T  15276761 acaagtgagattgacaccacatcttcacctaaaaccttaatacattatgtatattagtcatctcacattcatgtttctcaatatatacttttgcttccaa 15276860  T
Q  215 agtagaagtttaactcacacacgacgcattaatatctctct 255  Q
     |||||||||||||| ||||| ||| |||||| || |||||    
T  15276861 tgtagaagtttaacttacacatgacacattaacatatctct 15276901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 115 - 255
Target Start/End: Original strand, 15457130 - 15457270
Alignment:
Q  115 acaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatatactcttgcatcaaa 214  Q
    |||||| |||| |||||||||||| || | ||||||| || | |||| ||||||| | |||||||||   |||||  |||||||||||| |||| || ||    
T  15457130 acaagtgagattgacaccacatcttcacctaaaaccttaatacattatgtatattagtcatctcacattcatgtttctcaatatatacttttgcttccaa 15457229  T
Q  215 agtagaagtttaactcacacacgacgcattaatatctctct 255  Q
     |||||||||||||| ||||| ||| |||||| || |||||    
T  15457230 tgtagaagtttaacttacacatgacacattaacatatctct 15457270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 257 - 313
Target Start/End: Complemental strand, 14714672 - 14714616
Alignment:
Q  257 aacatctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatc 313  Q
    ||||| |||||||||||||||| ||||||||||| ||| | ||||||||||||||||    
T  14714672 aacatatactcttacataaaatttgaaactttaactcacacttgacacattaacatc 14714616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 256
Target Start/End: Complemental strand, 14715338 - 14715283
Alignment:
Q  201 actcttgcatcaaaagtagaagtttaactcacacacgacgcattaatatctctctc 256  Q
    |||||||||||||| |||||||||||||||||||| ||  |||||| |||||||||    
T  14715338 actcttgcatcaaatgtagaagtttaactcacacatgaaacattaacatctctctc 14715283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 232
Target Start/End: Complemental strand, 36990464 - 36990307
Alignment:
Q  74 tacaatggattgaatgatcacattcgaataagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggcc 173  Q
    ||||||| ||||||| |||||||| || ||||||||| || |||| | | || |||||||||| | ||  |||||||| |||| ||||  |||||||| |    
T  36990464 tacaatgtattgaataatcacatttgactaagagaaa-ccaacaaatgatattgacaccacatattcactcaaaaccttaagacattacatatattggtc 36990366  T
Q  174 atctcacaaatatgttgttcaatatatactcttgcatcaaaagtagaagtttaactcac 232  Q
    |||||||  | |||||||| ||| | ||||||||| || || ||||| |||||| ||||    
T  36990365 atctcacttacatgttgtttaatgtctactcttgcgtctaatgtagatgtttaattcac 36990307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 153 - 254
Target Start/End: Complemental strand, 760776 - 760675
Alignment:
Q  153 aagatattaggtatattggccatctcacaaatatgttgttcaatatatactcttgcatcaaaagtagaagtttaactcacacacgacgcattaatatctc 252  Q
    |||| |||||||||||| | ||  ||||  |||||||||| ||  |||| |||||||||||| ||||| |||||||||| ||| |||||||| | |||||    
T  760776 aagacattaggtatattagtcacttcactgatatgttgtttaaagtatattcttgcatcaaatgtagatgtttaactcatacatgacgcattcacatctc 760677  T
Q  253 tc 254  Q
    ||    
T  760676 tc 760675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 90 - 147
Target Start/End: Complemental strand, 38291389 - 38291332
Alignment:
Q  90 atcacattcgaataagagaaaccccacaagtaagatggacaccacatctgcatccaaa 147  Q
    |||||||| || ||||||||| |||| || |||||| |||||||||||||||||||||    
T  38291389 atcacatttgactaagagaaatcccataaataagattgacaccacatctgcatccaaa 38291332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 168
Target Start/End: Original strand, 19263274 - 19263352
Alignment:
Q  90 atcacattcgaataagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatat 168  Q
    |||||||| || ||| ||| ||| || |||| |||| |||||||||||| ||||| |||||| |||| |||||||||||    
T  19263274 atcacattagactaacagataccacaaaagtgagattgacaccacatctccatcctaaaccttaagacattaggtatat 19263352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 227
Target Start/End: Complemental strand, 38291903 - 38291798
Alignment:
Q  122 agatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatatactcttgcatcaaaagtagaa 221  Q
    |||| ||||| |||||| |||||||||||| |||| |||||||||||||   || ||||  |||||||  ||||| |  |||||||||||||| || |||    
T  38291903 agattgacacgacatcttcatccaaaaccttaagacattaggtatattgataatttcacttatatgtttctcaatgtccactcttgcatcaaatgtggaa 38291804  T
Q  222 gtttaa 227  Q
     |||||    
T  38291803 ctttaa 38291798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 311
Target Start/End: Original strand, 18953369 - 18953425
Alignment:
Q  255 tcaacatctactcttacataaaatgtgaaactttaattcaaatttgacacattaaca 311  Q
    ||||||||||||||| |||  ||||| ||| ||||||||| | ||||||||||||||    
T  18953369 tcaacatctactcttgcatccaatgtcaaattttaattcacagttgacacattaaca 18953425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 186
Target Start/End: Original strand, 23140510 - 23140622
Alignment:
Q  74 tacaatggattgaatgatcacattcgaataagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggcc 173  Q
    |||||||  |||||| |||| |||||  ||||||||  |||| || | | || |||||||||| |  | ||||||||| |||| ||||||||||| ||||    
T  23140510 tacaatgagttgaatcatcatattcggctaagagaattcccataaatgaaattgacaccacattttgacccaaaaccttaagacattaggtatataggcc 23140609  T
Q  174 atctcacaaatat 186  Q
    ||||||| |||||    
T  23140610 atctcactaatat 23140622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 151; Significance: 8e-80; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 45 - 335
Target Start/End: Original strand, 12125371 - 12125661
Alignment:
Q  45 attatagtgtttggatttcagagagattttacaatggattgaatgatcacattcgaataagagaaaccccacaagtaagatggacaccacatctgcatcc 144  Q
    |||||| ||||||||||||| || |||  |||||||||||| || |||||||| ||| ||||||||||||||||||||||| ||||||||||||  |||     
T  12125371 attataatgtttggatttcatagggatcgtacaatggattggatcatcacatttgaacaagagaaaccccacaagtaagatagacaccacatctctatct 12125470  T
Q  145 aaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatatactcttgcatcaaaagtagaagtttaactcacacacgacgcatt 244  Q
     |||| |||||| |||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||  | ||| ||||    
T  12125471 caaacatgaagacattaggtatattggtcatctcacatatatgttgctcaatatatactcttgcatcaaaagtagaagtgtaactcactaatgacacatt 12125570  T
Q  245 aatatctctctcaacatctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatctctccagtaagtgtcagactct 335  Q
    || ||||||||||||||||||| ||||||||||||||||| ||||| ||  ||||||||||||| ||||||| || || |||||| |||||    
T  12125571 aacatctctctcaacatctacttttacataaaatgtgaaattttaactcgcatttgacacattatcatctctgcattaggtgtcaaactct 12125661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 102 - 235
Target Start/End: Original strand, 14240504 - 14240637
Alignment:
Q  102 taagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatata 201  Q
    ||||||||||||||||| | |||| |||||||||||| ||| ||||| || || |||| ||||||||||| ||||||||| |||||||| |||| || ||    
T  14240504 taagagaaaccccacaaatgagattgacaccacatcttcattcaaaatcttaacatatcaggtatattggacatctcacatatatgttgctcaaaattta 14240603  T
Q  202 ctcttgcatcaaaagtagaagtttaactcacaca 235  Q
    || |||  ||||| ||| ||| ||||||||||||    
T  14240604 cttttgggtcaaatgtaaaaggttaactcacaca 14240637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 255 - 342
Target Start/End: Original strand, 11655403 - 11655490
Alignment:
Q  255 tcaacatctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatctctccagtaagtgtcagactctttgtgcc 342  Q
    ||||||| ||||||||||||||| ||| |||||||| ||| |||||| || |||||||||||||| |||||||||||||||| |||||    
T  11655403 tcaacatttactcttacataaaacgtggaactttaactcacatttgatacgttaacatctctccattaagtgtcagactcttcgtgcc 11655490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 122 - 235
Target Start/End: Complemental strand, 9266848 - 9266735
Alignment:
Q  122 agatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatatactcttgcatcaaaagtagaa 221  Q
    |||| |||||||||| | ||| |||||||| |||| |||||||||||||| ||||| ||  ||| |||| ||||||| ||||||| ||||||| ||| ||    
T  9266848 agattgacaccacattttcattcaaaaccttaagacattaggtatattggacatcttacttatacgttgctcaatatttactcttacatcaaatgtaaaa 9266749  T
Q  222 gtttaactcacaca 235  Q
    | ||||||||||||    
T  9266748 ggttaactcacaca 9266735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 102 - 233
Target Start/End: Complemental strand, 9265428 - 9265297
Alignment:
Q  102 taagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatata 201  Q
    |||||||||||| | || | |||| ||||| |||  | ||| |||||||| |||| |||| ||||||||| ||||||||  |||||||| | ||||| ||    
T  9265428 taagagaaaccctataaatgagattgacactacagtttcattcaaaaccttaagacattaagtatattggacatctcacttatatgttgcttaatattta 9265329  T
Q  202 ctcttgcatcaaaagtagaagtttaactcaca 233  Q
    ||||||||||||| ||| ||| ||||||||||    
T  9265328 ctcttgcatcaaatgtaaaaggttaactcaca 9265297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 177 - 254
Target Start/End: Original strand, 11654666 - 11654744
Alignment:
Q  177 tcacaaatatgttgttcaatatatactcttgcatcaaaa-gtagaagtttaactcacacacgacgcattaatatctctc 254  Q
    ||||| |||||||| | |||||||||||||||||||||| |||||| |||||||| ||||||||| ||||  |||||||    
T  11654666 tcacatatatgttgcttaatatatactcttgcatcaaaatgtagaaatttaactctcacacgacgtattaccatctctc 11654744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 90 - 255
Target Start/End: Complemental strand, 6437009 - 6436844
Alignment:
Q  90 atcacattcgaataagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgtt 189  Q
    |||||||| ||  |||||||| || |||||| |||| ||| |||||||| || | || |||| || | |||| ||||||| | |||||||||   |||||    
T  6437009 atcacatttgatcaagagaaatccgacaagtgagattgacgccacatcttcacctaacaccttaatacattatgtatattagtcatctcacattcatgtt 6436910  T
Q  190 gttcaatatatactcttgcatcaaaagtagaagtttaactcacacacgacgcattaatatctctct 255  Q
      |||||||||||| |||| || || |||||||||||||| | ||| ||| |||||| || |||||    
T  6436909 tctcaatatatacttttgcttccaatgtagaagtttaacttagacatgacacattaacatatctct 6436844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 316
Target Start/End: Original strand, 34849856 - 34849896
Alignment:
Q  276 aatgtgaaactttaattcaaatttgacacattaacatctct 316  Q
    ||||||||||||||||||| || ||||||||||||||||||    
T  34849856 aatgtgaaactttaattcacatatgacacattaacatctct 34849896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 102 - 229
Target Start/End: Original strand, 6087136 - 6087263
Alignment:
Q  102 taagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatata 201  Q
    ||||||||||||||||| | ||||  |||| |||| | || | |||||||  |||||||||||||| | |  |||||||  |||||||| |   ||||||    
T  6087136 taagagaaaccccacaattgagattaacactacattttcacctaaaaccttgagatattaggtatacttgtaatctcacttatatgttgctagttatata 6087235  T
Q  202 ctcttgcatcaaaagtagaagtttaact 229  Q
    || |||||| ||| ||||||||||||||    
T  6087236 ctattgcatgaaatgtagaagtttaact 6087263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 168
Target Start/End: Complemental strand, 50519 - 50441
Alignment:
Q  90 atcacattcgaataagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatat 168  Q
    |||||||| || ||| ||| ||| || |||| |||| |||||||||||| ||||| |||||| |||| |||||||||||    
T  50519 atcacattagactaacagataccacaaaagtgagattgacaccacatctccatcccaaaccttaagacattaggtatat 50441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 246
Target Start/End: Original strand, 9611703 - 9611805
Alignment:
Q  144 caaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatatactcttgcatcaaaagtagaagtttaactcacacacgacgcat 243  Q
    |||||||| |||| ||||||||||  || |||||||| || || ||| | || || |||| ||||||| || |||||||||||| ||||||| ||| |||    
T  9611703 caaaaccttaagacattaggtatacgggtcatctcactaacattttgcttaaaatctactattgcatccaacgtagaagtttaaatcacacatgacacat 9611802  T
Q  244 taa 246  Q
    |||    
T  9611803 taa 9611805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 340
Target Start/End: Original strand, 20935017 - 20935099
Alignment:
Q  258 acatctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatctctccagtaagtgtcagactctttgtg 340  Q
    ||||||||| || |||| ||| | ||| ||||| ||| |  ||||||||||||||||||||| ||||||||||  ||||||||    
T  20935017 acatctactattgcatacaatataaaattttaactcacacctgacacattaacatctctccattaagtgtcaggatctttgtg 20935099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 340
Target Start/End: Original strand, 42400444 - 42400485
Alignment:
Q  299 tgacacattaacatctctccagtaagtgtcagactctttgtg 340  Q
    ||||||||||||||||||||| ||||||||||  ||||||||    
T  42400444 tgacacattaacatctctccattaagtgtcaggatctttgtg 42400485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 246
Target Start/End: Complemental strand, 9262934 - 9262778
Alignment:
Q  90 atcacattcgaataagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgtt 189  Q
    |||||||| ||  |||||||| || ||| || |||| || | ||||||| || | ||||||| || | |||| ||||||| | |||||||||   |||||    
T  9262934 atcacatttgatcaagagaaatccgacatgtgagattgagagcacatcttcacctaaaaccttaatacattatgtatattagtcatctcacattcatgtt 9262835  T
Q  190 gttcaatatatactcttgcatcaaaagtagaagtttaactcacacacgacgcattaa 246  Q
      |||||||||| | |||| || || |||||||||||||| ||||| ||| ||||||    
T  9262834 tctcaatatatatttttgcttccaatgtagaagtttaacttacacatgacacattaa 9262778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 6e-28; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 83 - 254
Target Start/End: Original strand, 42756730 - 42756901
Alignment:
Q  83 ttgaatgatcacattcgaataagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaa 182  Q
    |||||| |||||||| |  | |||||||||||| |||| |||| |||||||||||| |||||||||||| ||||  ||||||||||| | ||| | ||      
T  42756730 ttgaatcatcacatttggcttagagaaaccccataagtgagattgacaccacatcttcatccaaaaccttaagactttaggtatatttgtcatttaactt 42756829  T
Q  183 atatgttgttcaatatatactcttgcatcaaaagtagaagtttaactcacacacgacgcattaatatctctc 254  Q
    |||||||| |||||||||| ||||||||| || |||||||||| ||||||| | ||| |||||| |||||||    
T  42756830 atatgttgctcaatatatagtcttgcatccaatgtagaagttttactcacaaatgacacattaacatctctc 42756901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 254 - 342
Target Start/End: Complemental strand, 50158258 - 50158170
Alignment:
Q  254 ctcaacatctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatctctccagtaagtgtcagactctttgtgcc 342  Q
    |||||||| ||||||| |||||||||||||||||||| ||| | |||||||||||||||||||||| ||||||||| ||||| ||||||    
T  50158258 ctcaacatatactcttgcataaaatgtgaaactttaactcatacttgacacattaacatctctccattaagtgtcaaactctctgtgcc 50158170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 102 - 235
Target Start/End: Complemental strand, 13909942 - 13909809
Alignment:
Q  102 taagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatata 201  Q
    ||||||||||||||||| | |||| |||||||||||| ||| ||||| || |||| || ||||||||||| ||||||||  |||||||| ||||||| ||    
T  13909942 taagagaaaccccacaaatgagattgacaccacatcttcattcaaaatcttaagacatcaggtatattggacatctcacttatatgttgctcaatattta 13909843  T
Q  202 ctcttgcatcaaaagtagaagtttaactcacaca 235  Q
     | |||| ||||| ||| ||| ||||||||||||    
T  13909842 tttttgcgtcaaatgtaaaaggttaactcacaca 13909809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 102 - 235
Target Start/End: Original strand, 24180606 - 24180739
Alignment:
Q  102 taagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatata 201  Q
    |||||||||||||| || | || | ||||| |||| | ||| |||||||| ||||||||||||||||||| ||| |||   |||||||| | ||||| ||    
T  24180606 taagagaaaccccaaaaatgagtttgacactacattttcattcaaaaccttaagatattaggtatattggacatttcagttatatgttgcttaatattta 24180705  T
Q  202 ctcttgcatcaaaagtagaagtttaactcacaca 235  Q
    ||||||||||||| ||| ||| ||||||||||||    
T  24180706 ctcttgcatcaaatgtaaaaggttaactcacaca 24180739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 42 - 235
Target Start/End: Original strand, 28474760 - 28474953
Alignment:
Q  42 ttcattatagtgtttggatttcagagagattttacaatggattgaatgatcacattcgaataagagaaaccccacaagtaagatggacaccacatctgca 141  Q
    ||||| |||||||||||| ||  ||| ||  ||| |||||||||| | |||||||| ||  ||||||||||||| || | |||| |||||||||||| ||    
T  28474760 ttcatcatagtgtttggagttttgagtgagcttataatggattga-tcatcacatttgaccaagagaaaccccaaaaatgagattgacaccacatcttca 28474858  T
Q  142 tccaaaacctg-aagatattaggtatattggccatctcacaaatatgttgttcaatatatactcttgcatcaaaagtagaagtttaactcacaca 235  Q
      ||||||||| |||| |||| ||||||| |||||||||||   ||||   |||||||||||| |||| |  || ||||||||||||||||||||    
T  28474859 ctcaaaacctgaaagacattatgtatattagccatctcacattcatgtatctcaatatatacttttgctttcaatgtagaagtttaactcacaca 28474953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 260 - 335
Target Start/End: Original strand, 28475656 - 28475731
Alignment:
Q  260 atctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatctctccagtaagtgtcagactct 335  Q
    |||||||||| |||| ||||||||| ||||| | | | || ||||||||||||||||||| |||||||||||||||    
T  28475656 atctactcttgcatacaatgtgaaattttaacttacacttaacacattaacatctctccattaagtgtcagactct 28475731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 254
Target Start/End: Complemental strand, 11560325 - 11560217
Alignment:
Q  145 aaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatatactcttgcatcaaaagtagaagtttaactcacacacgacgcatt 244  Q
    ||||||| |||| || | ||||||| | ||||||||  |||| |||| ||||||||||||||||||| || ||| ||||||||||||| || ||| ||||    
T  11560325 aaaaccttaagacatcaagtatatttgtcatctcacgtatatattgt-caatatatactcttgcatccaatgtataagtttaactcacccatgacacatt 11560227  T
Q  245 aatatctctc 254  Q
    || |||||||    
T  11560226 aacatctctc 11560217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 255
Target Start/End: Original strand, 24182416 - 24182581
Alignment:
Q  90 atcacattcgaataagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgtt 189  Q
    |||||||| ||  |||||||| || |||||| |||| |||||||||||| || |  |||||| || | |||| ||||||| | |||||||||   |||||    
T  24182416 atcacatttgatcaagagaaatccgacaagtgagattgacaccacatcttcacctgaaaccttaatacattatgtatattagtcatctcacattcatgtt 24182515  T
Q  190 gttcaatatatactcttgcatcaaaagtagaagtttaactcacacacgacgcattaatatctctct 255  Q
      |||||||||||| |||| |  || |||||||||||||| ||||| ||| |||||| || |||||    
T  24182516 tctcaatatatacttttgctttcaatgtagaagtttaacttacacatgacacattaacatatctct 24182581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 102 - 230
Target Start/End: Original strand, 12576850 - 12576978
Alignment:
Q  102 taagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatata 201  Q
    |||||||| |||||||| | |||| || |||| || |  | ||||||| | |||| | ||||||||| || |||||||| ||||||||||| |||||  |    
T  12576850 taagagaatccccacaaatgagattgagaccatattttgacccaaaactttaagacaataggtatatgggtcatctcactaatatgttgtttaatatcca 12576949  T
Q  202 ctcttgcatcaaaagtagaagtttaactc 230  Q
    |||||||||| || ||| |||||||||||    
T  12576950 ctcttgcatccaacgtaaaagtttaactc 12576978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 276 - 317
Target Start/End: Complemental strand, 48683221 - 48683180
Alignment:
Q  276 aatgtgaaactttaattcaaatttgacacattaacatctctc 317  Q
    ||||||||||||||| ||| ||||||||||||||||||||||    
T  48683221 aatgtgaaactttaactcacatttgacacattaacatctctc 48683180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 253
Target Start/End: Complemental strand, 285169 - 285101
Alignment:
Q  185 atgttgttcaatatatactcttgcatcaaaagtagaagtttaactcacacacgacgcattaatatctct 253  Q
    |||||||| || || |||||||||||| ||  |||||||||||||| |||| |||||||||| ||||||    
T  285169 atgttgtttaaaatctactcttgcatccaacctagaagtttaactctcacatgacgcattaacatctct 285101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 340
Target Start/End: Complemental strand, 13228763 - 13228676
Alignment:
Q  253 tctcaacatctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatctctccagtaagtgtcagactctttgtg 340  Q
    |||||||||||||| || |||  ||||||  | ||||| ||| | |||||||||||||||||||||| ||||| | ||||| ||||||    
T  13228763 tctcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctctccattaagtatgagactttttgtg 13228676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 201 - 256
Target Start/End: Original strand, 37516417 - 37516472
Alignment:
Q  201 actcttgcatcaaaagtagaagtttaactcacacacgacgcattaatatctctctc 256  Q
    ||||||||||||||  ||||||||||||||||||| ||  |||||| |||||||||    
T  37516417 actcttgcatcaaatatagaagtttaactcacacatgaaacattaacatctctctc 37516472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 340
Target Start/End: Original strand, 42727943 - 42728026
Alignment:
Q  257 aacatctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatctctccagtaagtgtcagactctttgtg 340  Q
    ||||||||||||| ||| |||||| ||||||||| | | | ||||||||||||||| ||||   ||| ||| ||||||||||||    
T  42727943 aacatctactcttgcatcaaatgtaaaactttaagtaacaattgacacattaacatatctcacttaattgtgagactctttgtg 42728026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 319
Target Start/End: Original strand, 24183445 - 24183506
Alignment:
Q  258 acatctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatctctcca 319  Q
    |||||||||||| |||| ||||||||| ||||| | | | || |||||||||||||||||||    
T  24183445 acatctactcttgcatacaatgtgaaattttaacttacacttaacacattaacatctctcca 24183506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 235
Target Start/End: Original strand, 35648561 - 35648638
Alignment:
Q  158 attaggtatattggccatctcacaaatatgttgttcaatatatactcttgcatcaaaagtagaagtttaactcacaca 235  Q
    |||||||||||||  | |||| |  |||||||| |||||||||||| |||| |  || ||||||||||||||||||||    
T  35648561 attaggtatattgttcttctcgcttatatgttgctcaatatatactattgcttacaatgtagaagtttaactcacaca 35648638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 335
Target Start/End: Complemental strand, 11559578 - 11559498
Alignment:
Q  255 tcaacatctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatctctccagtaagtgtcagactct 335  Q
    ||||||| ||||||| |||| ||| | ||| ||||| ||| | || ||| |||||||||||| || |||||||||||||||    
T  11559578 tcaacatttactcttgcatacaatatcaaattttaagtcacactttacatattaacatctcttcaataagtgtcagactct 11559498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1315 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold1315
Description:

Target: scaffold1315; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 83 - 233
Target Start/End: Complemental strand, 1430 - 1280
Alignment:
Q  83 ttgaatgatcacattcgaataagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaa 182  Q
    |||||| |||||||| |  |||||||||||||| |||| |||| |||||||||||| |||||||||||| ||||  |||| |||||| | ||| | ||      
T  1430 ttgaatcatcacatttggctaagagaaaccccataagtgagattgacaccacatcttcatccaaaaccttaagactttagatatatttgtcatttaactt 1331  T
Q  183 atatgttgttcaatatatactcttgcatcaaaagtagaagtttaactcaca 233  Q
    ||||||||  ||||||||| ||||||||| || |||||||||| |||||||    
T  1330 atatgttgcacaatatatagtcttgcatccaatgtagaagttttactcaca 1280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1293 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold1293
Description:

Target: scaffold1293; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 83 - 233
Target Start/End: Original strand, 641 - 791
Alignment:
Q  83 ttgaatgatcacattcgaataagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaa 182  Q
    |||||| |||||||| |  |||||||||||||| |||| |||| |||||||||||| |||||||||||| ||||  |||| |||||| | ||| | ||      
T  641 ttgaatcatcacatttggctaagagaaaccccataagtgagattgacaccacatcttcatccaaaaccttaagactttagatatatttgtcatttaactt 740  T
Q  183 atatgttgttcaatatatactcttgcatcaaaagtagaagtttaactcaca 233  Q
    ||||||||  ||||||||| ||||||||| || |||||||||| |||||||    
T  741 atatgttgcacaatatatagtcttgcatccaatgtagaagttttactcaca 791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 102 - 235
Target Start/End: Complemental strand, 45661254 - 45661121
Alignment:
Q  102 taagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatata 201  Q
    |||||||||||||| || | |||| ||||| |||| | ||| ||||| || |||| |||| ||||||||| ||||||||  |||||||| | ||||| ||    
T  45661254 taagagaaaccccataaatgagattgacactacattttcattcaaaatcttaagacattaagtatattggacatctcacttatatgttgcttaatattta 45661155  T
Q  202 ctcttgcatcaaaagtagaagtttaactcacaca 235  Q
    ||||||||||||| ||| ||| ||||||||||||    
T  45661154 ctcttgcatcaaatgtaaaaggttaactcacaca 45661121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 102 - 235
Target Start/End: Original strand, 45054003 - 45054136
Alignment:
Q  102 taagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatata 201  Q
    |||| |||||||||||| | |||| |||||||||||| ||| ||||| || |||| || ||||||||||   |||||||  |||||||| ||||||| ||    
T  45054003 taagtgaaaccccacaaatgagattgacaccacatcttcattcaaaatcttaagacatcaggtatattgaatatctcacttatatgttgctcaatattta 45054102  T
Q  202 ctcttgcatcaaaagtagaagtttaactcacaca 235  Q
    || |||| ||||| ||| ||| ||||||||||||    
T  45054103 cttttgcgtcaaatgtaaaaggttaactcacaca 45054136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 102 - 235
Target Start/End: Complemental strand, 45662698 - 45662566
Alignment:
Q  102 taagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatata 201  Q
    |||||||||||| |||| | |||| |||||||||||| ||| ||||| || |||| |||| ||||||||| ||||| ||  ||| |||| ||||||| ||    
T  45662698 taagagaaaccc-acaattgagattgacaccacatcttcattcaaaatcttaagacattacgtatattggacatcttacttatacgttgctcaatattta 45662600  T
Q  202 ctcttgcatcaaaagtagaagtttaactcacaca 235  Q
    ||||| ||||||| ||| ||| ||||||||||||    
T  45662599 ctcttacatcaaatgtaaaaggttaactcacaca 45662566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 101 - 231
Target Start/End: Complemental strand, 6467070 - 6466940
Alignment:
Q  101 ataagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatat 200  Q
    ||||||||||||  | |||| |||| |||||||||||| ||||||||| || |||| ||||| |||||| | ||| |||   |||| ||| |||||||||    
T  6467070 ataagagaaacctgataagtgagattgacaccacatctccatccaaaaacttaagacattagttatatttgtcatttcatttatatcttgctcaatatat 6466971  T
Q  201 actcttgcatcaaaagtagaagtttaactca 231  Q
    ||||||| ||| || |||||||||| |||||    
T  6466970 actcttggatccaatgtagaagttttactca 6466940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 255 - 313
Target Start/End: Complemental strand, 29651840 - 29651782
Alignment:
Q  255 tcaacatctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatc 313  Q
    ||||||||||||||| |||  ||||||||||||||| ||| ||||||||||||||||||    
T  29651840 tcaacatctactcttgcattcaatgtgaaactttaactcacatttgacacattaacatc 29651782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 228
Target Start/End: Original strand, 45058390 - 45058515
Alignment:
Q  104 agagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaa-gatattaggtatattggccatctcacaaatatgttgttcaatatatac 202  Q
    |||||||||||| || | |||| |||| ||||||| ||  ||||||||||| || |||| ||||||||||||||||||    |||||  |||||||||||    
T  45058390 agagaaaccccaaaaatgagattgacatcacatcttcactcaaaacctgaaagacattatgtatattggccatctcactttcatgtttctcaatatatac 45058489  T
Q  203 tcttgcatcaaaagtagaagtttaac 228  Q
    | |||| || || |||||||||||||    
T  45058490 ttttgcttccaatgtagaagtttaac 45058515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 103 - 255
Target Start/End: Complemental strand, 14872873 - 14872721
Alignment:
Q  103 aagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatatac 202  Q
    |||||||| || |||||| |||| |||||||||||| || | ||  ||| || | |||| ||||||| | |||||||||   |||||  |||||||||||    
T  14872873 aagagaaatccgacaagtgagattgacaccacatcttcacctaactccttaatacattatgtatattagtcatctcacattcatgtttctcaatatatac 14872774  T
Q  203 tcttgcatcaaaagtagaagtttaactcacacacgacgcattaatatctctct 255  Q
    | |||| || || |||||||||||||| ||||| ||| |||||| || |||||    
T  14872773 ttttgcttccaatgtagaagtttaacttacacatgacacattaacatatctct 14872721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 340
Target Start/End: Complemental strand, 19040761 - 19040681
Alignment:
Q  260 atctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatctctccagtaagtgtcagactctttgtg 340  Q
    ||||||| || |||| ||| | ||| ||||| ||| | |||||||||||||||||||||| ||||||||||  ||||||||    
T  19040761 atctactattgcatacaatataaaattttaactcacacttgacacattaacatctctccattaagtgtcaggatctttgtg 19040681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 186
Target Start/End: Original strand, 41752880 - 41752992
Alignment:
Q  74 tacaatggattgaatgatcacattcgaataagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggcc 173  Q
    |||||||  |||||| |||| |||||  ||||||||  |||| || | |||| |||||||||| |  | ||||||||| |||| ||||||||||| ||||    
T  41752880 tacaatgagttgaatcatcatattcggctaagagaattcccataaatgagattgacaccacattttgacccaaaaccttaagacattaggtatatgggcc 41752979  T
Q  174 atctcacaaatat 186  Q
    ||||||| |||||    
T  41752980 atctcactaatat 41752992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 163 - 234
Target Start/End: Original strand, 5788087 - 5788158
Alignment:
Q  163 gtatattggccatctcacaaatatgttgttcaatatatactcttgcatcaaaagtagaagtttaactcacac 234  Q
    ||||||| | ||||||||  |||||||| ||||||||||||||| |||  || |||||||||||| ||||||    
T  5788087 gtatatttgtcatctcacttatatgttgctcaatatatactcttacatataatgtagaagtttaaatcacac 5788158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 158 - 253
Target Start/End: Complemental strand, 45276059 - 45275964
Alignment:
Q  158 attaggtatattggccatctcacaaatatgttgttcaatatatactcttgcatcaaaagtagaagtttaactcacacacgacgcattaatatctct 253  Q
    |||| ||||||||| ||||||||  | | |||||| ||| | ||||||||||||||| |||||  ||| | ||||||| ||| |||||||||||||    
T  45276059 attaagtatattggtcatctcacttacacgttgtttaatgtctactcttgcatcaaatgtagatattttattcacacatgacacattaatatctct 45275964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 336
Target Start/End: Original strand, 13439396 - 13439454
Alignment:
Q  278 tgtgaaactttaattcaaatttgacacattaacatctctccagtaagtgtcagactctt 336  Q
    ||||||||||||||||| |||||||||||| | || |||| | ||||| ||||||||||    
T  13439396 tgtgaaactttaattcacatttgacacattgatatttctctactaagtatcagactctt 13439454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 336
Target Start/End: Original strand, 19994500 - 19994538
Alignment:
Q  298 ttgacacattaacatctctccagtaagtgtcagactctt 336  Q
    ||||||||||| |||||||||| ||||||||||||||||    
T  19994500 ttgacacattagcatctctccattaagtgtcagactctt 19994538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 329
Target Start/End: Original strand, 36729293 - 36729367
Alignment:
Q  255 tcaacatctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatctctccagtaagtgtca 329  Q
    ||||||||||||||| |||| ||||||||| ||| | ||| | |||||| |||||||| ||||||  ||||||||    
T  36729293 tcaacatctactcttgcatacaatgtgaaatttttactcacacttgacaaattaacatatctccataaagtgtca 36729367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 246
Target Start/End: Original strand, 41753962 - 41754080
Alignment:
Q  128 acaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatatactcttgcatcaaaagtagaagtttaa 227  Q
    |||||||||||  || |||||||| |||| ||| | |||||| | ||||||||  |||||||| ||||||| ||||||| |||  || ||| ||||||||    
T  41753962 acaccacatctaaattcaaaaccttaagacattggatatattagtcatctcacttatatgttgctcaatatctactcttacatataatgtataagtttaa 41754061  T
Q  228 ctcacacacgacgcattaa 246  Q
     | ||||| ||| ||||||    
T  41754062 atgacacatgacacattaa 41754080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 340
Target Start/End: Original strand, 3395514 - 3395555
Alignment:
Q  299 tgacacattaacatctctccagtaagtgtcagactctttgtg 340  Q
    ||||||||||||||||||||| ||||| | ||||||||||||    
T  3395514 tgacacattaacatctctccattaagtatgagactctttgtg 3395555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 340
Target Start/End: Original strand, 5788889 - 5788974
Alignment:
Q  255 tcaacatctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatctctccagtaagtgtcagactctttgtg 340  Q
    |||||||||||| || |||  ||||||  | ||||| ||| ||||||||||||||||||||| || ||||| | ||||||| ||||    
T  5788889 tcaacatctactattgcattcaatgtgttattttaactcacatttgacacattaacatctcttcattaagtatgagactctctgtg 5788974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 340
Target Start/End: Original strand, 39839110 - 39839190
Alignment:
Q  260 atctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatctctccagtaagtgtcagactctttgtg 340  Q
    ||||||| || |||| ||| | ||| ||||| ||| | |||||||||||||||||||||  ||||||||||  ||||||||    
T  39839110 atctactattgcatacaatataaaattttaactcacacttgacacattaacatctctccgttaagtgtcaggatctttgtg 39839190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1933 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold1933
Description:

Target: scaffold1933; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 145 - 230
Target Start/End: Original strand, 552 - 637
Alignment:
Q  145 aaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatatactcttgcatcaaaagtagaagtttaactc 230  Q
    ||||||| |||||||||||||||| || |||||||| ||||||||||| |||||  ||||||||||| || ||| |||||||||||    
T  552 aaaaccttaagatattaggtatatgggtcatctcactaatatgttgtttaatatccactcttgcatccaacgtaaaagtttaactc 637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 122 - 255
Target Start/End: Original strand, 11554338 - 11554471
Alignment:
Q  122 agatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatatactcttgcatcaaaagtagaa 221  Q
    |||| |||||||||| |  | ||||||||| |||| |||||||| || || |||||||| ||||||||||| || |  ||||| |||||| || ||||||    
T  11554338 agattgacaccacattttgacccaaaaccttaagacattaggtacatgggtcatctcactaatatgttgtttaacaactactcctgcatccaatgtagaa 11554437  T
Q  222 gtttaactcacacacgacgcattaatatctctct 255  Q
    | |||||||||||| ||| |||||| ||||||||    
T  11554438 ggttaactcacacatgacacattaacatctctct 11554471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 102 - 211
Target Start/End: Complemental strand, 24175895 - 24175786
Alignment:
Q  102 taagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatata 201  Q
    ||||||||||||||||| |||||| |||||||||| || | |||||| || ||||||||| | ||||||   ||||||   |||||||| ||||||||||    
T  24175895 taagagaaaccccacaactaagattgacaccacatatgtacccaaaatcttaagatattatgcatattgattatctcatttatatgttgctcaatatata 24175796  T
Q  202 ctcttgcatc 211  Q
    ||||||||||    
T  24175795 ctcttgcatc 24175786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 122 - 255
Target Start/End: Complemental strand, 4852940 - 4852807
Alignment:
Q  122 agatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatatactcttgcatcaaaagtagaa 221  Q
    |||| |||||||||| |  |||||||| || |||| ||| |||| || || |||||||| ||||||||||| || |  ||||| |||||| || ||||||    
T  4852940 agattgacaccacattttgatccaaaatcttaagacattcggtacatgggtcatctcactaatatgttgtttaacaactactcctgcatccaatgtagaa 4852841  T
Q  222 gtttaactcacacacgacgcattaatatctctct 255  Q
    | |||||||||||| ||| |||||| ||||||||    
T  4852840 ggttaactcacacatgacacattaacatctctct 4852807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 246
Target Start/End: Original strand, 34515077 - 34515221
Alignment:
Q  103 aagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaa-gatattaggtatattggccatctcacaaatatgttgttcaatatata 201  Q
    ||||||||||||| || | |||| |||| ||||||| ||  ||||||||||| || |||| ||||||||| |||||||||   |||||  ||||||||||    
T  34515077 aagagaaaccccaaaaatgagattgacatcacatcttcactcaaaacctgaaagacattatgtatattggtcatctcacattcatgtttctcaatatata 34515176  T
Q  202 ctcttgcatcaaaagtagaagtttaactcacacacgacgcattaa 246  Q
    || |||| |  || |||||||||||||| ||||| ||| ||||||    
T  34515177 cttttgctttcaatgtagaagtttaactgacacatgacacattaa 34515221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 340
Target Start/End: Original strand, 7428507 - 7428587
Alignment:
Q  260 atctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatctctccagtaagtgtcagactctttgtg 340  Q
    ||||||| || |||| ||| | ||| ||||| ||| | |||||||||||||||||||||| ||||||||||  ||||||||    
T  7428507 atctactattgcatacaatataaaattttaactcacacttgacacattaacatctctccattaagtgtcaggatctttgtg 7428587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 121 - 256
Target Start/End: Complemental strand, 24398048 - 24397914
Alignment:
Q  121 aagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatatactcttgcatcaaaagtaga 220  Q
    ||||| |||| ||| ||| || |||||| || | || ||||| |||||| | |||||||   |||||||| ||||||||||||  | | || || |||||    
T  24398048 aagattgacatcacctcttcacccaaaatcttacgacattagatatattagtcatctcatttatatgttgctcaatatatactaattcgtctaatgtaga 24397949  T
Q  221 agtttaactcacacacgacgcattaatatctctctc 256  Q
    |||| |||||||||| ||| ||||||||||||||||    
T  24397948 agtt-aactcacacatgacacattaatatctctctc 24397914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 312
Target Start/End: Original strand, 24360161 - 24360218
Alignment:
Q  255 tcaacatctactcttacataaaatgtgaaactttaattcaaatttgacacattaacat 312  Q
    ||||||||||||||| |||  | |||| |||||||| ||||| |||||||||||||||    
T  24360161 tcaacatctactcttgcatccattgtggaactttaagtcaaaattgacacattaacat 24360218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 18090618 - 18090682
Alignment:
Q  74 tacaatggattgaatgatcacattcgaataagagaaaccccacaagtaagatggacaccacatct 138  Q
    |||||||  |||||| |||||||| || ||||||||||||||||||| ||||  |||||| ||||    
T  18090618 tacaatgagttgaatcatcacatttgattaagagaaaccccacaagtgagatacacaccaaatct 18090682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 318
Target Start/End: Complemental strand, 20874263 - 20874199
Alignment:
Q  254 ctcaacatctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatctctcc 318  Q
    |||||||||||   ||||||  ||||| || |||||| ||| |||||||||||||||||||||||    
T  20874263 ctcaacatctatatttacatctaatgtaaatctttaactcacatttgacacattaacatctctcc 20874199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 90 - 246
Target Start/End: Complemental strand, 39047786 - 39047632
Alignment:
Q  90 atcacattcgaataagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgtt 189  Q
    |||||||| || ||| ||||||  ||||||| ||||  ||||||| ||| |||||||||||| |  |||||||||||||||||||||||||| |||| ||    
T  39047786 atcacatttgactaaaagaaacatcacaagtgagatcaacaccacttcttcatccaaaacctcagcatattaggtatattggccatctcacatatatttt 39047687  T
Q  190 gttcaatatatactcttgcatcaaaagtagaagtttaactcacacacgacgcattaa 246  Q
      |||   |||||||||||||  || ||| || ||||||||||||| ||| ||||||    
T  39047686 tctca--gtatactcttgcatttaatgtaaaaatttaactcacacatgacacattaa 39047632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 246
Target Start/End: Original strand, 31089445 - 31089615
Alignment:
Q  77 aatggattgaatgatcacattcgaataagagaaaccccacaagtaagatggacaccacatctgcatccaaaac-ctgaagatattaggtatattggccat 175  Q
    ||||| ||| || ||||||||  | ||||||||||| ||||||| |||| |||||||||||  || | ||||  ||  ||| |||||||||||||  |||    
T  31089445 aatgggttggatcatcacattttactaagagaaacctcacaagtgagattgacaccacatcctcaccaaaaaaacttcagacattaggtatattgatcat 31089544  T
Q  176 ctcacaaatatgttgttcaatatatactcttgcatcaaaagtagaagtttaactcacacacgacgcattaa 246  Q
    ||| |  |||||||| |||| |||||||||| |||| || |||||| ||||||| ||| | ||| ||||||    
T  31089545 ctcgcttatatgttgctcaaaatatactctttcatccaatgtagaaatttaacttacatatgacacattaa 31089615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 255
Target Start/End: Complemental strand, 16853042 - 16852890
Alignment:
Q  103 aagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatatac 202  Q
    |||||||| || ||| || |||| |||||||||||| |    ||||||| || | |||| ||||||| | |||||||||   |||||  |||||||||||    
T  16853042 aagagaaatccgacatgtgagattgacaccacatcttcccttaaaaccttaatacattatgtatattagtcatctcacattcatgtttctcaatatatac 16852943  T
Q  203 tcttgcatcaaaagtagaagtttaactcacacacgacgcattaatatctctct 255  Q
    | |||| || || |||||||||||||| ||||| ||| |||||| || |||||    
T  16852942 ttttgcttccaatgtagaagtttaacttacacatgacacattaacatatctct 16852890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 340
Target Start/End: Original strand, 20306755 - 20306835
Alignment:
Q  260 atctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatctctccagtaagtgtcagactctttgtg 340  Q
    ||||||| || |||| ||| | ||| ||||| ||| | |||||||||||||||||||||| ||||||||||  ||||||||    
T  20306755 atctactattgcatacaatataaaattttaactcacacttgacacattaacatctctccattaagtgtcaggatctttgtg 20306835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 340
Target Start/End: Complemental strand, 40946583 - 40946503
Alignment:
Q  260 atctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatctctccagtaagtgtcagactctttgtg 340  Q
    ||||||| || |||| ||| | ||| ||||| ||| | |||||||||||||||||||||| ||||||||||  ||||||||    
T  40946583 atctactattgcatacaatataaaattttaactcacacttgacacattaacatctctccattaagtgtcaggatctttgtg 40946503  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 192 - 235
Target Start/End: Complemental strand, 27342261 - 27342218
Alignment:
Q  192 tcaatatatactcttgcatcaaaagtagaagtttaactcacaca 235  Q
    |||||||||||| ||||||| || ||||||||||||||||||||    
T  27342261 tcaatatatactattgcatccaatgtagaagtttaactcacaca 27342218  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 340
Target Start/End: Complemental strand, 1992448 - 1992406
Alignment:
Q  298 ttgacacattaacatctctccagtaagtgtcagactctttgtg 340  Q
    |||||||||||||||||||||| ||||||||||  ||||||||    
T  1992448 ttgacacattaacatctctccattaagtgtcaggatctttgtg 1992406  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 340
Target Start/End: Original strand, 30001802 - 30001844
Alignment:
Q  298 ttgacacattaacatctctccagtaagtgtcagactctttgtg 340  Q
    |||||||||||||||||||||| ||||||||||  ||||||||    
T  30001802 ttgacacattaacatctctccattaagtgtcaggatctttgtg 30001844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 247
Target Start/End: Original strand, 43386370 - 43386531
Alignment:
Q  86 aatgatcacattcgaataagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaata 185  Q
    |||||||||||| ||  ||||||||||||||| || | ||  |||||||||||  |  | |||||| ||||| ||  ||||||| | | ||||||| |||    
T  43386370 aatgatcacatttgaccaagagaaaccccacacgtgaaattcacaccacatctaaactcgaaaccttaagattttgtgtatattagtcttctcacatata 43386469  T
Q  186 tgttgttcaatatatactcttgcatcaaaagtagaagtttaactcacacacgacgcattaat 247  Q
    ||||| ||||||| ||||||| |||  || | ||||||| || ||| ||| ||| |||||||    
T  43386470 tgttgctcaatatctactctttcatataatggagaagttgaaatcaaacatgacacattaat 43386531  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 335
Target Start/End: Original strand, 8313455 - 8313487
Alignment:
Q  303 acattaacatctctccagtaagtgtcagactct 335  Q
    ||||||||||||||||| |||||||||||||||    
T  8313455 acattaacatctctccattaagtgtcagactct 8313487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 317
Target Start/End: Original strand, 43387115 - 43387179
Alignment:
Q  253 tctcaacatctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatctctc 317  Q
    |||||||||||||| || |||  |||||| || ||||| ||| | ||||||||||||||||||||    
T  43387115 tctcaacatctactattgcattcaatgtgtaattttaactcacacttgacacattaacatctctc 43387179  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 340
Target Start/End: Complemental strand, 49879911 - 49879847
Alignment:
Q  276 aatgtgaaactttaattcaaatttgacacattaacatctctccagtaagtgtcagactctttgtg 340  Q
    |||||| |||||||| ||||| | ||||||||||||| ||| |  ||||||| ||||||||||||    
T  49879911 aatgtggaactttaagtcaaaatggacacattaacatatcttccttaagtgtaagactctttgtg 49879847  T

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Target: scaffold0191 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 103 - 235
Target Start/End: Complemental strand, 6070 - 5937
Alignment:
Q  103 aagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagat-attaggtatattggccatctcacaaatatgttgttcaatatata 201  Q
    ||||||||||||| || | |||| |||||||||||| ||  ||||| |||||  | |||| |||||||||||||||||||   |||||  ||||||||||    
T  6070 aagagaaaccccaaaaattagattgacaccacatcttcactcaaaatctgaaattcattatgtatattggccatctcacattcatgtttctcaatatata 5971  T
Q  202 ctcttgcatcaaaagtagaagtttaactcacaca 235  Q
    || |||| |  || ||||||||||||||||||||    
T  5970 cttttgctttcaatgtagaagtttaactcacaca 5937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 102 - 214
Target Start/End: Complemental strand, 12337 - 12225
Alignment:
Q  102 taagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatata 201  Q
    ||||||||||||||| | | |||| | |||||||||| ||| ||||| || |||| || ||||||||||| ||||||||  |||||||| ||||||| ||    
T  12337 taagagaaaccccacgaatgagattgccaccacatcttcattcaaaatcttaagacatcaggtatattggacatctcacttatatgttgctcaatatcta 12238  T
Q  202 ctcttgcatcaaa 214  Q
    || |||| |||||    
T  12237 cttttgcgtcaaa 12225  T

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Target: scaffold0191; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 258 - 335
Target Start/End: Complemental strand, 5220 - 5143
Alignment:
Q  258 acatctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatctctccagtaagtgtcagactct 335  Q
    |||||||||||| |||| ||||||||| ||||| | | | || | ||||||||||||||||| |||||||||||||||    
T  5220 acatctactcttgcatacaatgtgaaattttaacttacacttaaaacattaacatctctccattaagtgtcagactct 5143  T

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Target: scaffold0061 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 74 - 179
Target Start/End: Original strand, 45555 - 45660
Alignment:
Q  74 tacaatggattgaatgatcacattcgaataagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggcc 173  Q
    |||||||  |||||| |||||||| || ||||||||||||||||||| ||||  |||||| |||| || |||||| || |||| |||||||||||| | |    
T  45555 tacaatgagttgaatcatcacatttgattaagagaaaccccacaagtgagataaacaccaaatcttcacccaaaatcttaagacattaggtatatttgtc 45654  T
Q  174 atctca 179  Q
    ||||||    
T  45655 atctca 45660  T

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Target: scaffold0017 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 74 - 179
Target Start/End: Complemental strand, 153232 - 153127
Alignment:
Q  74 tacaatggattgaatgatcacattcgaataagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggcc 173  Q
    |||||||  |||||| |||||||| || ||||||||||||||||||| ||||  |||||| |||| || |||||| || |||| |||||||||||| | |    
T  153232 tacaatgagttgaatcatcacatttgattaagagaaaccccacaagtgagataaacaccaaatcttcacccaaaatcttaagacattaggtatatttgtc 153133  T
Q  174 atctca 179  Q
    ||||||    
T  153132 atctca 153127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 257 - 313
Target Start/End: Complemental strand, 126637 - 126581
Alignment:
Q  257 aacatctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatc 313  Q
    ||||| |||||||||||||||| ||||||||||| ||| | ||||||||||||||||    
T  126637 aacatatactcttacataaaatttgaaactttaactcacacttgacacattaacatc 126581  T

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Target: scaffold0012 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 258 - 318
Target Start/End: Original strand, 96635 - 96695
Alignment:
Q  258 acatctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatctctcc 318  Q
    |||| |||||||||||||||| ||||||||||| ||| | |||||||||||||||| ||||    
T  96635 acatatactcttacataaaatttgaaactttaactcacacttgacacattaacatcactcc 96695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 256
Target Start/End: Original strand, 95949 - 96004
Alignment:
Q  201 actcttgcatcaaaagtagaagtttaactcacacacgacgcattaatatctctctc 256  Q
    |||||||||||||| |||||||||||||||||||| ||  |||||| |||||||||    
T  95949 actcttgcatcaaatgtagaagtttaactcacacatgaaacattaacatctctctc 96004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 257 - 313
Target Start/End: Original strand, 2260826 - 2260882
Alignment:
Q  257 aacatctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatc 313  Q
    ||||| |||||||||||||||| ||||||||||| ||| | ||||||||||||||||    
T  2260826 aacatatactcttacataaaatttgaaactttaactcacacttgacacattaacatc 2260882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 235
Target Start/End: Complemental strand, 24541900 - 24541800
Alignment:
Q  135 atctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatatactcttgcatcaaaagtagaagtttaactcacac 234  Q
    |||| |||||||||||| || | | ||||||||||||  |||||||  |||| ||  ||| |||| ||||||||||| ||  || |||||||||||||||    
T  24541900 atcttcatccaaaaccttaacacagtaggtatattggttatctcacgtatatttttctcagtatacactcttgcatccaacataaaagtttaactcacac 24541801  T
Q  235 a 235  Q
    |    
T  24541800 a 24541800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 232
Target Start/End: Complemental strand, 5221 - 5142
Alignment:
Q  153 aagatattaggtatattggccatctcacaaatatgttgttcaatatatactcttgcatcaaaagtagaagtttaactcac 232  Q
    |||| |||||||||||||| ||  ||||  |||||||||||||| |||| ||||||||| || ||||| |||||||||||    
T  5221 aagacattaggtatattggtcacttcacttatatgttgttcaatgtatattcttgcatccaatgtagatgtttaactcac 5142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 256
Target Start/End: Complemental strand, 30971 - 30837
Alignment:
Q  121 aagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatatactcttgcatcaaaagtaga 220  Q
    ||||| |||| ||| ||| || |||||| || | || ||||| |||||| | |||||||   |||||||| |||||||||||| | ||| | || |||||    
T  30971 aagattgacatcacctcttcacccaaaatcttatgacattagatatattagtcatctcatttatatgttgctcaatatatactatcgcacctaatgtaga 30872  T
Q  221 agtttaactcacacacgacgcattaatatctctctc 256  Q
    |||| |||||||||| ||| ||||||||||||||||    
T  30871 agtt-aactcacacatgacacattaatatctctctc 30837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1312 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold1312
Description:

Target: scaffold1312; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 158 - 235
Target Start/End: Complemental strand, 87 - 10
Alignment:
Q  158 attaggtatattggccatctcacaaatatgttgttcaatatatactcttgcatcaaaagtagaagtttaactcacaca 235  Q
    |||||||||||||  | |||| |  |||||||| |||||||||||| ||||||  || ||||||||||||||||||||    
T  87 attaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgtagaagtttaactcacaca 10  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 198
Target Start/End: Original strand, 10567 - 10663
Alignment:
Q  102 taagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatat 198  Q
    |||||||||||| |||||| |||| ||||| |||||| ||||||||| || | || ||| ||||| || | ||||||||  |||||||| |||||||    
T  10567 taagagaaaccctacaagtgagattgacactacatcttcatccaaaaacttaggacatttggtatgttcgtcatctcacttatatgttgctcaatat 10663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 163 - 234
Target Start/End: Original strand, 32460 - 32531
Alignment:
Q  163 gtatattggccatctcacaaatatgttgttcaatatatactcttgcatcaaaagtagaagtttaactcacac 234  Q
    ||||||| | ||||||||  |||||||| ||||||||||||||| |||  || |||||||||||| ||||||    
T  32460 gtatatttgtcatctcacttatatgttgctcaatatatactcttacatataatgtagaagtttaaatcacac 32531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 340
Target Start/End: Original strand, 33262 - 33347
Alignment:
Q  255 tcaacatctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatctctccagtaagtgtcagactctttgtg 340  Q
    |||||||||||| || |||  ||||||  | ||||| ||| ||||||||||||||||||||| || ||||| | ||||||| ||||    
T  33262 tcaacatctactattgcattcaatgtgttattttaactcacatttgacacattaacatctcttcattaagtatgagactctctgtg 33347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1345 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1345
Description:

Target: scaffold1345; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 340
Target Start/End: Complemental strand, 1914 - 1832
Alignment:
Q  258 acatctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatctctccagtaagtgtcagactctttgtg 340  Q
    ||||||||| || |||| ||| | ||| ||||| ||| | |||||||||||||||||||| | ||||||||||  ||||||||    
T  1914 acatctactattgcatacaatataaaattttaactcacacttgacacattaacatctctcaattaagtgtcaggatctttgtg 1832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1737 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1737
Description:

Target: scaffold1737; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 318
Target Start/End: Complemental strand, 594 - 530
Alignment:
Q  254 ctcaacatctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatctctcc 318  Q
    |||||||||||   ||||||  ||||| || |||||| ||| |||||||||||||||||||||||    
T  594 ctcaacatctatatttacatctaatgtaaatctttaactcacatttgacacattaacatctctcc 530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0377 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0377
Description:

Target: scaffold0377; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 253
Target Start/End: Original strand, 12546 - 12637
Alignment:
Q  164 tatattggccatctcacaaatatgttgttcaatatatactcttgcatcaaaagta--gaagtttaactcacacacgacgcattaatatctct 253  Q
    |||||||  ||||||||  | |||||| ||||||| |||||||||||| || |||  ||| ||||||||||||| ||| |||||| ||||||    
T  12546 tatattgatcatctcacttacatgttgctcaatatttactcttgcatctaatgtatagaaatttaactcacacatgacacattaacatctct 12637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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