View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2462_low_8 (Length: 332)
Name: NF2462_low_8
Description: NF2462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2462_low_8 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 22 - 332
Target Start/End: Original strand, 33754361 - 33754670
Alignment:
| Q |
22 |
cacgatttgatgtaatcaacaaaacaacgcaataacgtagtcatgctttagtgactgttcaatcaagattaagcggtcttaatttgagttcgatatttta |
121 |
Q |
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| T |
33754361 |
cacgatttgatgtaatcaacaaaacaacgcaataacatagtcatgctttagtgactgttcaatcaagattaagcggtcttgatttgagctcgatatttta |
33754460 |
T |
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| Q |
122 |
aaattaaacactaaaaattaagtttannnnnnnnnaaattgttcaattaatattgaacggctaacaatgtcttgacagcatgtacgtggcaaaaagaaag |
221 |
Q |
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| T |
33754461 |
aaattaaacactaaaaattaagtctatttttttt-aaattgttcaattaatattgaacggctaacaatgtcttgacagcatgaacgtggcaaaaagaaac |
33754559 |
T |
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| Q |
222 |
tacggtggatcctatttcctaaaaatatttttgttgtgtttactatgttagttggaatcacaactgcctattggatgatgtgtataaaattccaaatttc |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
33754560 |
tacggtggatcctatttcctaaaaatatttttgttgtgtttactatgttagttggaatcacaactgcctatttgatgatgtgtataaaattccaaatttc |
33754659 |
T |
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| Q |
322 |
gataactgtcg |
332 |
Q |
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| T |
33754660 |
aataactgtcg |
33754670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 122
Target Start/End: Complemental strand, 39613367 - 39613266
Alignment:
| Q |
21 |
ccacgatttgatgtaatcaacaaaacaacgcaataacgtagtcatgctttagtgactgttcaatcaagattaagcggtcttaatttgagttcgatatttt |
120 |
Q |
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|||||||||| |||| ||| ||||||||| |||| |||||||||| ||| ||||| ||| ||| ||||| | | |||| ||||||||||| |||||| |
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| T |
39613367 |
ccacgatttgttgtagtcagcaaaacaactcaattacgtagtcatattttggtgaccgttgaattaagatcgaacactcttgatttgagttcggtatttt |
39613268 |
T |
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| Q |
121 |
aa |
122 |
Q |
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|| |
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| T |
39613267 |
aa |
39613266 |
T |
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