View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2465_high_1 (Length: 770)
Name: NF2465_high_1
Description: NF2465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2465_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 682; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 682; E-Value: 0
Query Start/End: Original strand, 67 - 760
Target Start/End: Original strand, 8456942 - 8457635
Alignment:
| Q |
67 |
gtgggcaaatttagaaagcaaagttccggacatagctaaagctggaatcacttcagcatggttgccaccgccaactcattccttctcgcctgaaggtaaa |
166 |
Q |
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| T |
8456942 |
gtgggcaaatttagaaagcaaagttccggacatagctaaagctggaatcacttcagcatggttgccaccgccaactcattccttctcgcctgaaggttaa |
8457041 |
T |
|
| Q |
167 |
atcaactgcctttgaagtattaggcatacgattctagggtcttaaagtgcaataatttattgtctttcctctgttttgcaggttacactcctcagaacct |
266 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8457042 |
atcaactgcctttgaagtattaggcatacgattctagggtcttgaagtgcaataatttattgtctttcctctgttttgcaggttacactcctcagaacct |
8457141 |
T |
|
| Q |
267 |
ttactctcttaatagtaaatatggttctgagcatcaattaaaagctttacttcaaaagttgaagcaacagaaagtcagagcaatggctgatatagttatc |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8457142 |
ttactctcttaatagtaaatatggttctgagcatcaattaaaagctttacttcaaaagttgaagcaacagaaagtcagagcaatggctgatatagttatc |
8457241 |
T |
|
| Q |
367 |
aatcatcgtgttggtaccacccaaggacatggagggatgtataatcgttttgatggaattccattaccgtgggatgaacgtgctgtaacatcatctactg |
466 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8457242 |
aatcatcgtgttggtaccacccaaggacatggagggatgtataatcgttttgatggaattccattaccgtgggatgaacgtgctgtaacatcatctactg |
8457341 |
T |
|
| Q |
467 |
gtggactggtaacatatatgatacattcaaatatattttcattttattcgaatttgaatcccatgttcctcctgttgtatctttgtgttgtttatttcag |
566 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8457342 |
gtggactggtaacatatatgatacatccaaatatattttcattttattcgaatttgaatcccatgttcctcctgttgtatctttgtgttgtttatttcag |
8457441 |
T |
|
| Q |
567 |
ggtaatcgaaacactggggccattttccacgggtttcccaatatcgaccatactcaagattttgtgagaaaggatatcataggatggcttcagtggcttc |
666 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8457442 |
ggtaatcgaaacactggggccattttccacgggtttcccaatatcgaccatactcaagattttgtgagaaaggatatcataggatggcttcagtggcttc |
8457541 |
T |
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| Q |
667 |
gccataatgtaggctttcaggattttcgttttgattatgcaaaagggtaagatgtgctacactacacctttagaatattgagggttttcctttg |
760 |
Q |
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| T |
8457542 |
gccataatgtaggctttcaggattttcgttttgattatgcaaaagggtaagatgtgctacactacacctttagaatattgagggttttcctttg |
8457635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 155; Significance: 7e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 530 - 728
Target Start/End: Complemental strand, 6827925 - 6827728
Alignment:
| Q |
530 |
tgttcctcctgttgtatctttgtgttgtttatttcagggtaatcgaaacactggggccattttccacgggtttcccaatatcgaccatactcaagatttt |
629 |
Q |
| |
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|||||||| || |||||||||| |||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
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| T |
6827925 |
tgttcctcttgctgtatctttgcgttgttcatttctggttaatcgaaacactggggccattttccacgggtttcccaatatcgaccacactcaagattgt |
6827826 |
T |
|
| Q |
630 |
gtgagaaaggatatcataggatggcttcagtggcttcgccataatgtaggctttcaggattttcgttttgattatgcaaaagggtaagatgtgctacac |
728 |
Q |
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| T |
6827825 |
gtgagaaaggatatcataggatggcttcagtggcttcgccataatgtgggctttcaggattttcgttttgattatgc-aaagggtaagatgtgctacac |
6827728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 155; Significance: 7e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 530 - 728
Target Start/End: Complemental strand, 27964568 - 27964371
Alignment:
| Q |
530 |
tgttcctcctgttgtatctttgtgttgtttatttcagggtaatcgaaacactggggccattttccacgggtttcccaatatcgaccatactcaagatttt |
629 |
Q |
| |
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|||||||| || | |||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
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| T |
27964568 |
tgttcctcttgctatatctttgcgttgttcatttcaggttaatcgaaacactggggccattttccacgggtttcccaatatcgaccacactcaagattgt |
27964469 |
T |
|
| Q |
630 |
gtgagaaaggatatcataggatggcttcagtggcttcgccataatgtaggctttcaggattttcgttttgattatgcaaaagggtaagatgtgctacac |
728 |
Q |
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| T |
27964468 |
gtgagaaaggatatcataggatggcttcagtggcttcgccataatgtgggctttcaggattttcgttttgattatgc-aaagggtaagatgtgctacac |
27964371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 136; Significance: 2e-70; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 569 - 728
Target Start/End: Original strand, 9822258 - 9822416
Alignment:
| Q |
569 |
taatcgaaacactggggccattttccacgggtttcccaatatcgaccatactcaagattttgtgagaaaggatatcataggatggcttcagtggcttcgc |
668 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
9822258 |
taatcgaaacactggggccattttccacgggtttccccatatcgaccacactcaagattttgtgagaaaggatatcataggatggcttcagtggctttgc |
9822357 |
T |
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| Q |
669 |
cataatgtaggctttcaggattttcgttttgattatgcaaaagggtaagatgtgctacac |
728 |
Q |
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|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
9822358 |
cataatgtgggctttcaggattttcgttttgattatgc-aaagggtaagatgtgctacac |
9822416 |
T |
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