View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2465_high_3 (Length: 469)
Name: NF2465_high_3
Description: NF2465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2465_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 8e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 28787696 - 28787507
Alignment:
| Q |
16 |
agcaacagaatcatcaaatatgacttttatcaagcatatcttgtgagatttatcaactcaaagcaaatgacacattcttgtaaatcaaaacaacttccaa |
115 |
Q |
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| T |
28787696 |
agcaacagaatcatcaaatatgacttttatcaagcat--cttgtgagatttatcaactcaaagcaaatgacaaattcttgtaaatcaaaacaacttcaaa |
28787599 |
T |
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| Q |
116 |
tcacatatttatcaactcaaagcaaatgaccaataaaagttatagaatatgaaaatttacaaacttagaattattttgttatttatggaata |
207 |
Q |
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| T |
28787598 |
tcacatatttatcaactcaaagcaaatgaccaataaaagttatagaatatgaaaatttacaaacttagaattattttgttatttatggaata |
28787507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 301 - 440
Target Start/End: Complemental strand, 28787342 - 28787205
Alignment:
| Q |
301 |
gtcgtgtcgtacaaccaacaaagatggaaaaggcatggtaaaacaagctacaaatnnnnnnntatagtgcaatgaattggttttattattaaaaaatttg |
400 |
Q |
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| T |
28787342 |
gtcgtgtcgtacaaccaacaaagatggaaaaggcatggtaaaacaagctacaaataaaaatatatagtgcaatgaattggttttattattaaaaattttg |
28787243 |
T |
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| Q |
401 |
agttacaattttcttatctaaatattaacaacaatattat |
440 |
Q |
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| T |
28787242 |
agttacaa--ttcttatctaaatattaacaacaatattat |
28787205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 201
Target Start/End: Original strand, 10420402 - 10420450
Alignment:
| Q |
153 |
agttatagaatatgaaaatttacaaacttagaattattttgttatttat |
201 |
Q |
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| T |
10420402 |
agttatagaatatcaaaattttcaaacttaaaattatttttttatttat |
10420450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 201
Target Start/End: Original strand, 44184573 - 44184621
Alignment:
| Q |
153 |
agttatagaatatgaaaatttacaaacttagaattattttgttatttat |
201 |
Q |
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| T |
44184573 |
agttatagaatatcaaaattttcaaacttaaaattatttttttatttat |
44184621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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