View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2465_high_4 (Length: 432)
Name: NF2465_high_4
Description: NF2465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2465_high_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 165; Significance: 4e-88; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 15 - 240
Target Start/End: Complemental strand, 28524663 - 28524438
Alignment:
| Q |
15 |
gggaagttaatgtgctagagaacgnnnnnnngagaggaagagcttgatagaaaaagaaaacgtggagtaatgatgcaaatcatatgatattagatggtaa |
114 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
28524663 |
gggaagttaatgagctagagaacaaaaaaaagagaggaagagcttgatagaaaaagaaaacgtggagtaataatgcaaatcatatgatattagatggtaa |
28524564 |
T |
|
| Q |
115 |
caatacaaaggcaacacaacaacattttttaacggtgggtcctggcaattaggcccacatgaccaacgattgtgttgagttggaattgtcggagattgga |
214 |
Q |
| |
|
|||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
28524563 |
caatacaaaggcaacacaacaatatgttttaacagtgggtcctggcaattaggcccacatgaccaatgattgtgttgagttggaattgtcggggattgga |
28524464 |
T |
|
| Q |
215 |
tcacccgagtgtagttccatcactaa |
240 |
Q |
| |
|
||||||||||| ||||||||||||| |
|
|
| T |
28524463 |
tcacccgagtgctgttccatcactaa |
28524438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 233 - 397
Target Start/End: Complemental strand, 28522212 - 28522046
Alignment:
| Q |
233 |
atcactaagggacctaatccgagttcacaaatcagatattannnnnnnnnnnn--aaactctttgccatgccaataagattaaggagattcgtagcatag |
330 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
28522212 |
atcactaagggacctaatccgagttcacaaatcagatattatatttttctttttgaaaccctttgccatgccaataagattgaggagattcgtaggatag |
28522113 |
T |
|
| Q |
331 |
taggttatgcgtcttgttttaccgttgatggagaaagaagaagtggaagtctagctatgctttggaa |
397 |
Q |
| |
|
| ||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
28522112 |
tgggttatgtgtcttgttttaccgttgatagagaaggaagaagtggaagtctagctatgctttggaa |
28522046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University