View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2465_high_6 (Length: 364)
Name: NF2465_high_6
Description: NF2465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2465_high_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 65 - 335
Target Start/End: Original strand, 22943409 - 22943684
Alignment:
| Q |
65 |
ttatttatttttctagtttagtgaagatgatcaattctatgtgaactatatatatagacacatcgtggagtattgaatcatgttcttcctcaannnnnnn |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22943409 |
ttatttatttttctagtttagtgaagatgatcaattctatgtgaactatatata--gacacatcgtggagtattgaatcatgttcttcctcaattttttt |
22943506 |
T |
|
| Q |
165 |
attttatataataactaac-tggtcagaatata---aattttgttttttgatgtggtcaatgtaaaatattgttttttatgttacaacaatgtaaaatat |
260 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22943507 |
attttatataataactaaagtggtcagaatatataaaatgttgttttttgatgtggtcaatgtaaaatattgttttttatgttacaacaatgtaaaatat |
22943606 |
T |
|
| Q |
261 |
tgttaaaaaggaaaatatttagttattttccaccaatgtgttaataatattatattaag---atgtgattgaacttct |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
22943607 |
tgttaaaaaggaaaatatttagttattttccaccaatgtgttaataatattatattaagaatatgtgattgaacttct |
22943684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 22943385 - 22943423
Alignment:
| Q |
13 |
aatataaggtagaacaagttttaattatttatttttcta |
51 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22943385 |
aatataaggtagaacaagttttaattatttatttttcta |
22943423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 73 - 141
Target Start/End: Original strand, 22973868 - 22973935
Alignment:
| Q |
73 |
ttttctagtttagtgaagatgatcaattctatgtgaactatatatatagacacatcgtggagtattgaa |
141 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||| ||| |||||||||||||||| |||||| |||||| |
|
|
| T |
22973868 |
ttttcttgtttagtgaagaacatcaattctatgtaaac-atatatatagacacatagtggagcattgaa |
22973935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University