View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2465_low_10 (Length: 353)
Name: NF2465_low_10
Description: NF2465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2465_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 68 - 344
Target Start/End: Complemental strand, 37779595 - 37779318
Alignment:
| Q |
68 |
gtgaatttggtgcacg-tattaaggccatggatttcaggttttgttcttgttgatttgattcccttatccttcaagtaaagagcttcctctaaggtcatt |
166 |
Q |
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| T |
37779595 |
gtgaatttggtgcacgatattaaggccatggacttcaggttttgttcttgttgatttgattcccttatccttcaagtaaagagcttcctctaaggtcatt |
37779496 |
T |
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| Q |
167 |
aatagaaatcacaaacagattgatgaaatatgtatattattgaatggaaataatgagcatagaagctctacaatgaagggatcacatttcaagagtcaga |
266 |
Q |
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| T |
37779495 |
aatagaaatcacaaacagattgatgaaatatgtatattattgaatggaaataatgagcatagaagctctacaatgaagggatcacatttcaagagtcaga |
37779396 |
T |
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| Q |
267 |
aactcctaaccagagagatgttctctcctaacctcctcaatagtaatagaatgaatgaattttggatcttgtctgtgg |
344 |
Q |
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| T |
37779395 |
aactcctaaccagagagatgttctctcctaacctactcaatagtaatagaatgaatgaattttggatcttgtctgtgg |
37779318 |
T |
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Back To:
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Target: chr4 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 38386866 - 38386795
Alignment:
| Q |
5 |
gaatgtat-tttaagtttttcagaaagaggtttgtagctatttgaacattatgtgttggtgtttgtgaattt |
75 |
Q |
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| T |
38386866 |
gaatgtatctttaagtttttcagaaagaggtttgtagttattttgacattatgtgttggtgtttgtgaattt |
38386795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 179 - 240
Target Start/End: Original strand, 3382150 - 3382211
Alignment:
| Q |
179 |
aaacagattgatgaaatatgtatattattgaatggaaataatgagcatagaagctctacaat |
240 |
Q |
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| T |
3382150 |
aaacagaatgatgaaatatgtgtattattcaatgtaaatgatgagcatagaagctctacaat |
3382211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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