View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2465_low_12 (Length: 352)
Name: NF2465_low_12
Description: NF2465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2465_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 9 - 323
Target Start/End: Original strand, 44731076 - 44731390
Alignment:
| Q |
9 |
gattattctcaaatggataggattttgaaggaagatagaagttatatgttgggtatgattgataagattaaagcatctggatgtaatgtgttgttgactc |
108 |
Q |
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| T |
44731076 |
gattattctcaaatggataggattttgaaggaagatagaagttatatgttgggtatgattgataagattaaagcatctggatgtaatgtgttgttgactc |
44731175 |
T |
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| Q |
109 |
aggaggagagtattttgagtgatgctgctactgatttgtctttgcattatcttgctaaaactaacattttggtgattaaggatgttgaatgcgatgagat |
208 |
Q |
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| T |
44731176 |
aggaggagagtattttgagtgatgctgctactgatttgtctttgcattatcttgctaaagctaacattttggtgattaaggatgttgaatgcaatgagat |
44731275 |
T |
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| Q |
209 |
taagattattaccaagacacttaattgtttgcctattggctaatattgagcatttttgtaaagagatgttgggttatgctgatcttgtggaggaggttgc |
308 |
Q |
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| T |
44731276 |
tgagattattaccaagacacttaattgtttgcctattggctaatattgagcatttttgtaaagagaagttgggttatgctgatcttgtggaggaggttgc |
44731375 |
T |
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| Q |
309 |
tcttggggatgatgg |
323 |
Q |
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| T |
44731376 |
tcttggggatgatgg |
44731390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 9 - 319
Target Start/End: Original strand, 50701622 - 50701928
Alignment:
| Q |
9 |
gattattctcaaatggataggattttgaaggaagatagaagttatatgttgggtatgattgataagattaaagcatctggatgtaatgtgttgttgactc |
108 |
Q |
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| T |
50701622 |
gattactctcagatggataggattttgaaggaagagaggagttatattttagggatgattaagaagatcaaggcaaccggttgtaatgtgttgttgattc |
50701721 |
T |
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| Q |
109 |
aggaggagagtattttgagtgatgctgctactgatttgtctttgcattatcttgctaaaactaacattttggtgattaaggatgttgaatgcgatgagat |
208 |
Q |
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| T |
50701722 |
---aaaagagtattttgagagatgctgttactgatttgtctttgcattatcttgctaaagctaagattttagtgattaaagatgttgagcgtgacgagat |
50701818 |
T |
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| Q |
209 |
taagattattaccaagacacttaattgtttgcctattggctaatattgagcatttttgtaaagagatgttgggttatgctgatcttgtggaggaggttgc |
308 |
Q |
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| || | ||||||||||| |||||||||||||||||| ||||||||||| |||||| || |||| ||||||||||||||||||||| || ||| || | |
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| T |
50701819 |
tgagttcattaccaagactcttaattgtttgcctatt-gctaatattgaacattttcgtgctgagaagttgggttatgctgatcttgtagaagagctttc |
50701917 |
T |
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| Q |
309 |
tcttggggatg |
319 |
Q |
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| T |
50701918 |
tcttggggatg |
50701928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 115 - 193
Target Start/End: Original strand, 20826776 - 20826854
Alignment:
| Q |
115 |
agagtattttgagtgatgctgctactgatttgtctttgcattatcttgctaaaactaacattttggtgattaaggatgt |
193 |
Q |
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||||||||||||| |||| || | |||||||||||||||||||||||| |||| |||| ||||||||||||| ||||| |
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| T |
20826776 |
agagtattttgagagatgttgttgctgatttgtctttgcattatcttgttaaagctaagtttttggtgattaaagatgt |
20826854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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