View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2465_low_16 (Length: 322)
Name: NF2465_low_16
Description: NF2465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2465_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 90 - 295
Target Start/End: Complemental strand, 36488984 - 36488772
Alignment:
| Q |
90 |
atgcaataatgtgaagattcgtcaagaaa-ggtctatatttagtcaaaagtggttattgagtttgtgttgacattatcataaatagggatg----attag |
184 |
Q |
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| T |
36488984 |
atgcaataatatgaagattcgtcaagaaaaggtctatatttagtcaaaagtgcttattgagtttgtgttgacattatcataaatagggatgattaattag |
36488885 |
T |
|
| Q |
185 |
aaactggaaagagattggaacaagatggggtcactt--catccctccaaaggttaaacattttatatggcctcttggtgttaggggaaaacagtttttgt |
282 |
Q |
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|||| |||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
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| T |
36488884 |
aaacgggaaagagattggaacaagatgtggtcacttcccatccctccgaaggttaaacattttatgtggcctcttggtgttaggggataacagtttttgt |
36488785 |
T |
|
| Q |
283 |
tagggtttctgtg |
295 |
Q |
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||||||||||||| |
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| T |
36488784 |
tagggtttctgtg |
36488772 |
T |
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