View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2465_low_18 (Length: 304)

Name: NF2465_low_18
Description: NF2465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2465_low_18
NF2465_low_18
[»] chr8 (8 HSPs)
chr8 (113-245)||(1668699-1668831)
chr8 (113-245)||(16659493-16659625)
chr8 (113-245)||(38520619-38520751)
chr8 (113-245)||(22015507-22015639)
chr8 (18-73)||(1668871-1668926)
chr8 (18-73)||(16659665-16659720)
chr8 (18-73)||(38520524-38520579)
chr8 (18-73)||(22015679-22015734)
[»] chr4 (6 HSPs)
chr4 (113-245)||(23217613-23217745)
chr4 (113-245)||(45153392-45153524)
chr4 (113-245)||(45144612-45144744)
chr4 (18-73)||(23217518-23217573)
chr4 (18-73)||(45153564-45153619)
chr4 (18-73)||(45144784-45144839)
[»] chr3 (4 HSPs)
chr3 (113-245)||(2338209-2338341)
chr3 (113-245)||(21239761-21239893)
chr3 (18-73)||(2338114-2338169)
chr3 (18-73)||(21239933-21239988)
[»] chr5 (2 HSPs)
chr5 (113-245)||(3174837-3174969)
chr5 (18-73)||(3175009-3175064)
[»] chr2 (4 HSPs)
chr2 (113-245)||(3934686-3934818)
chr2 (113-245)||(38975059-38975191)
chr2 (18-73)||(3934592-3934646)
chr2 (18-51)||(38974970-38975003)
[»] chr1 (2 HSPs)
chr1 (113-245)||(47192359-47192491)
chr1 (28-66)||(47192536-47192574)
[»] scaffold0393 (2 HSPs)
scaffold0393 (113-214)||(10948-11050)
scaffold0393 (18-73)||(10853-10908)


Alignment Details
Target: chr8 (Bit Score: 129; Significance: 9e-67; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 113 - 245
Target Start/End: Complemental strand, 1668831 - 1668699
Alignment:
Q  113 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaaggtttc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1668831 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaaggtttc 1668732  T
Q  213 attttatcataaataactcttcttctctgctcc 245  Q
    |||||||||||||||||||||||||||| ||||    
T  1668731 attttatcataaataactcttcttctcttctcc 1668699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 113 - 245
Target Start/End: Complemental strand, 16659625 - 16659493
Alignment:
Q  113 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaaggtttc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16659625 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaaggtttc 16659526  T
Q  213 attttatcataaataactcttcttctctgctcc 245  Q
    |||||||||||||||||||||||||||| ||||    
T  16659525 attttatcataaataactcttcttctcttctcc 16659493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 113 - 245
Target Start/End: Original strand, 38520619 - 38520751
Alignment:
Q  113 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaaggtttc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38520619 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaaggtttc 38520718  T
Q  213 attttatcataaataactcttcttctctgctcc 245  Q
    |||||||||||||||||||||||||||| ||||    
T  38520719 attttatcataaataactcttcttctcttctcc 38520751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 113 - 245
Target Start/End: Complemental strand, 22015639 - 22015507
Alignment:
Q  113 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaaggtttc 212  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  22015639 tggcagtaaggcacagacagctccgaatactaaactatgatctctcctatggctcttgctctagctagttgtgaaactcaaagttcttttctaaggtttc 22015540  T
Q  213 attttatcataaataactcttcttctctgctcc 245  Q
    |||||||||| ||||||||||||||||| ||||    
T  22015539 attttatcatgaataactcttcttctcttctcc 22015507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 1668926 - 1668871
Alignment:
Q  18 caccacagacagaaaaacagctgcaagcagcgctgatctgctacaccagtagcacc 73  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1668926 caccaaagacagaaaaacagctgcaagcagcgctgatctgctacaccagtagcacc 1668871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 16659720 - 16659665
Alignment:
Q  18 caccacagacagaaaaacagctgcaagcagcgctgatctgctacaccagtagcacc 73  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16659720 caccaaagacagaaaaacagctgcaagcagcgctgatctgctacaccagtagcacc 16659665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 38520524 - 38520579
Alignment:
Q  18 caccacagacagaaaaacagctgcaagcagcgctgatctgctacaccagtagcacc 73  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38520524 caccaaagacagaaaaacagctgcaagcagcgctgatctgctacaccagtagcacc 38520579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 22015734 - 22015679
Alignment:
Q  18 caccacagacagaaaaacagctgcaagcagcgctgatctgctacaccagtagcacc 73  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  22015734 caccaaagacagaaaaacagctgcaagcagcgctgatctgctacaccagcagcacc 22015679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 129; Significance: 9e-67; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 113 - 245
Target Start/End: Original strand, 23217613 - 23217745
Alignment:
Q  113 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaaggtttc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23217613 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaaggtttc 23217712  T
Q  213 attttatcataaataactcttcttctctgctcc 245  Q
    |||||||||||||||||||||||||||| ||||    
T  23217713 attttatcataaataactcttcttctcttctcc 23217745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 113 - 245
Target Start/End: Complemental strand, 45153524 - 45153392
Alignment:
Q  113 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaaggtttc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45153524 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaaggtttc 45153425  T
Q  213 attttatcataaataactcttcttctctgctcc 245  Q
    |||||||||||||||||||||||||||| ||||    
T  45153424 attttatcataaataactcttcttctcttctcc 45153392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 113 - 245
Target Start/End: Complemental strand, 45144744 - 45144612
Alignment:
Q  113 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaaggtttc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45144744 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaaggtttc 45144645  T
Q  213 attttatcataaataactcttcttctctgctcc 245  Q
    |||||||||| ||||||||||||||||| ||||    
T  45144644 attttatcatgaataactcttcttctcttctcc 45144612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 23217518 - 23217573
Alignment:
Q  18 caccacagacagaaaaacagctgcaagcagcgctgatctgctacaccagtagcacc 73  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23217518 caccaaagacagaaaaacagctgcaagcagcgctgatctgctacaccagtagcacc 23217573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 45153619 - 45153564
Alignment:
Q  18 caccacagacagaaaaacagctgcaagcagcgctgatctgctacaccagtagcacc 73  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45153619 caccaaagacagaaaaacagctgcaagcagcgctgatctgctacaccagtagcacc 45153564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 45144839 - 45144784
Alignment:
Q  18 caccacagacagaaaaacagctgcaagcagcgctgatctgctacaccagtagcacc 73  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  45144839 caccaaagacagaaaaacagctgcaagcagcgctgatctgctacaccagcagcacc 45144784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 129; Significance: 9e-67; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 113 - 245
Target Start/End: Original strand, 2338209 - 2338341
Alignment:
Q  113 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaaggtttc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2338209 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaaggtttc 2338308  T
Q  213 attttatcataaataactcttcttctctgctcc 245  Q
    |||||||||||||||||||||||||||| ||||    
T  2338309 attttatcataaataactcttcttctcttctcc 2338341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 113 - 245
Target Start/End: Complemental strand, 21239893 - 21239761
Alignment:
Q  113 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaaggtttc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  21239893 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttcaaaggtttc 21239794  T
Q  213 attttatcataaataactcttcttctctgctcc 245  Q
    |||||||||||||||||||||||||||| ||||    
T  21239793 attttatcataaataactcttcttctcttctcc 21239761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 2338114 - 2338169
Alignment:
Q  18 caccacagacagaaaaacagctgcaagcagcgctgatctgctacaccagtagcacc 73  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2338114 caccaaagacagaaaaacagctgcaagcagcgctgatctgctacaccagtagcacc 2338169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 21239988 - 21239933
Alignment:
Q  18 caccacagacagaaaaacagctgcaagcagcgctgatctgctacaccagtagcacc 73  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  21239988 caccaaagacagaaaaacagctgcaagcagcgctgatctgctacaccagcagcacc 21239933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 113 - 245
Target Start/End: Complemental strand, 3174969 - 3174837
Alignment:
Q  113 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaaggtttc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3174969 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaaggtttc 3174870  T
Q  213 attttatcataaataactcttcttctctgctcc 245  Q
    |||||||||| ||||||||||||||||| ||||    
T  3174869 attttatcatgaataactcttcttctcttctcc 3174837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 3175064 - 3175009
Alignment:
Q  18 caccacagacagaaaaacagctgcaagcagcgctgatctgctacaccagtagcacc 73  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3175064 caccaaagacagaaaaacagctgcaagcagcgctgatctgctacaccagcagcacc 3175009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 113 - 245
Target Start/End: Original strand, 3934686 - 3934818
Alignment:
Q  113 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaaggtttc 212  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3934686 tggcagtaaggcacagacagctctgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaaggtttc 3934785  T
Q  213 attttatcataaataactcttcttctctgctcc 245  Q
    |||||||||||||||||||||||||||| ||||    
T  3934786 attttatcataaataactcttcttctcttctcc 3934818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 113 - 245
Target Start/End: Original strand, 38975059 - 38975191
Alignment:
Q  113 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaaggtttc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  38975059 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctcaagctagttgtcaaactcaaagttcttttctaaggtttc 38975158  T
Q  213 attttatcataaataactcttcttctctgctcc 245  Q
    |||||||||| ||||||||||||||||| ||||    
T  38975159 attttatcatgaataactcttcttctcttctcc 38975191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 3934592 - 3934646
Alignment:
Q  18 caccacagacagaaaaacagctgcaagcagcgctgatctgctacaccagtagcacc 73  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  3934592 caccaaagacagaaaa-cagctgcaagcagcgctgatctgctacaccagcagcacc 3934646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 38974970 - 38975003
Alignment:
Q  18 caccacagacagaaaaacagctgcaagcagcgct 51  Q
    ||||| ||||||||||||||||||||||||||||    
T  38974970 caccaaagacagaaaaacagctgcaagcagcgct 38975003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 113 - 245
Target Start/End: Complemental strand, 47192491 - 47192359
Alignment:
Q  113 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaaggtttc 212  Q
    |||||| ||||| | ||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||     
T  47192491 tggcagcaaggcccggacaggtccaaatactaaaccatgatctctcctatggctcttgctctatctagttgtcaaactcaaagttcttttctaaggtttt 47192392  T
Q  213 attttatcataaataactcttcttctctgctcc 245  Q
    | || ||||||||||||| ||||||||| ||||    
T  47192391 acttgatcataaataactattcttctcttctcc 47192359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 66
Target Start/End: Complemental strand, 47192574 - 47192536
Alignment:
Q  28 agaaaaacagctgcaagcagcgctgatctgctacaccag 66  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  47192574 agaaaaacagctgcaagcagcgctgatctactacaccag 47192536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 113 - 214
Target Start/End: Original strand, 10948 - 11050
Alignment:
Q  113 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttc-ttttctaaggttt 211  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  10948 tggcagtaaggcacagacagctctaaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttctttttctaaggttt 11047  T
Q  212 cat 214  Q
    |||    
T  11048 cat 11050  T

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Target: scaffold0393; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 10853 - 10908
Alignment:
Q  18 caccacagacagaaaaacagctgcaagcagcgctgatctgctacaccagtagcacc 73  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  10853 caccaaagacagaaaaacagctgcaagcagcgctgatctgctacaccagcagcacc 10908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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