View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2465_low_2 (Length: 575)
Name: NF2465_low_2
Description: NF2465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2465_low_2 |
 | |
|
| [»] chr7 (5 HSPs) |
| |
|
| [»] chr2 (2 HSPs) |
| |
|
| [»] chr4 (5 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 355; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 69 - 575
Target Start/End: Complemental strand, 25599790 - 25599283
Alignment:
| Q |
69 |
aattaatccgtgtttctttttcttgtgtatcatttctctcactcacacacaattattgcttctagtgattgaaaaactcaaatcgaaaacatggagcaat |
168 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
25599790 |
aattaatctgtgtttctttttcttgtgtatcatttctctcactcacacacaattattgcttctagtgattgaaaaactcaaataaaaaacatggagcaat |
25599691 |
T |
|
| Q |
169 |
gatactcgtaattctttcttggaaaaattgtttttctcttcctcattcctatgaatattattattcttgtctgtatctccttccctcttatttaactcat |
268 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||| |||||| ||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
25599690 |
gatactcgtaattctttcctgggaaaattgtttttctcttccccattcctatgaattttattactcttgtccgtatctccttccctctcatttaactcat |
25599591 |
T |
|
| Q |
269 |
atgtattgcagcacaagaaggaggtttatggcaagcttattataactgttacaatttgatgagtttccttc-aacnnnnnnnnttacaattggatgagtt |
367 |
Q |
| |
|
|| ||||||| |||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
25599590 |
atacattgcagtacaagaaggaagtttatgtcaagcttattataacagttacaatttgatgagtttccttcaaaaaaaaaaaattacaattggatgagtt |
25599491 |
T |
|
| Q |
368 |
tgcttttaaatgattggatatcaacaacatgaatgtatggttttggtagaagggaaaactccattacaattttattctgattatggaatnnnnnnngaaa |
467 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
25599490 |
tgcttttaaatgattggatatcaacaaaatgaatgtatggttttggtagaatggaaaactccattacaattttattctgattacggaataaaaaaagaaa |
25599391 |
T |
|
| Q |
468 |
tctcaacaaagtcactgcaagtttgggaatggctttgaattggtacaattagcatgtaggagaagagatcatagagggaatttcatttaacaactaatat |
567 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||| |
|
|
| T |
25599390 |
tctcaacaaagtcactgaaagtttggaaatggctttgaattggtacaattagcatgtaggagaagatatcatagaaggaattgcatttaacaactaatat |
25599291 |
T |
|
| Q |
568 |
ttccaatt |
575 |
Q |
| |
|
|||||||| |
|
|
| T |
25599290 |
ttccaatt |
25599283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 69 - 575
Target Start/End: Complemental strand, 45162733 - 45162242
Alignment:
| Q |
69 |
aattaatccgtgtttctttttcttgtgtatcatttctctcactcacacacaattattgcttctagtgattgaaaaactcaaatcgaaaacatggagcaat |
168 |
Q |
| |
|
||||||| |||||||||||||| ||||||||| |||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
45162733 |
aattaatttgtgtttctttttctagtgtatcat------cactcagacacaattattgcttttagtgattgaaaaactcaaaccgaaaacatggagcaat |
45162640 |
T |
|
| Q |
169 |
gatactcgtaattctttcttggaaaaattgtttttctctt-cctcattcctatgaatattattattcttgtctgtatctcc-ttccctcttatttaa--- |
263 |
Q |
| |
|
||||||||||||||| || || |||||||||||| ||||| |||| |||||||||||||||||||||||| | ||||||| |||||||||| |||| |
|
|
| T |
45162639 |
gatactcgtaattctctcctgaaaaaattgttttactcttccctcgatcctatgaatattattattcttgtttctatctcctttccctcttacttaactc |
45162540 |
T |
|
| Q |
264 |
ctcatatgtattgcagcacaagaaggaggtttatggcaagcttattataactgttacaatttgatgagtttccttcaacnnnnnnnnttacaattggatg |
363 |
Q |
| |
|
||| |||||||||||||||| |||||| |||||| ||| ||||||||||| |||||||| |||||| ||||||||| || ||||||||| |
|
|
| T |
45162539 |
ctcctatgtattgcagcacatgaaggaaatttatgtcaatcttattataacaattacaattggatgagcttccttcaaaacaaaattata-aattggatg |
45162441 |
T |
|
| Q |
364 |
agtttgcttttaaatgattggatatcaacaacatgaa-tgtatggttttggtagaagggaaaactccattacaattttattctgattatggaatnnnnnn |
462 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||| |||||||||||||||||| ||||||||||||||||||||||||||||||| || || |
|
|
| T |
45162440 |
agtttgcttttaaatgattggatatcaaaaaagtgaattgtatggttttggtagaatggaaaactccattacaattttattctgattacggcataaaaaa |
45162341 |
T |
|
| Q |
463 |
ngaaatctcaacaaagtcactgcaagtttgggaatggctttgaattggtacaattagcatgtaggagaagagatcatagagggaatttcatttaacaact |
562 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
45162340 |
ataaatctcagcaaagtcac--------------tggctttgaattggtacaattagtatgtaggagaagagatcatagagggaattgcatttaacaact |
45162255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 115 - 575
Target Start/End: Complemental strand, 43929175 - 43928725
Alignment:
| Q |
115 |
acacaattattgcttctagtgattgaaaaactcaaatcgaaaacatggagcaatgatactcgtaattctttcttggaaaaattgtttttctctt-cctca |
213 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||| || | ||||||||||||||||||| || | |
|
|
| T |
43929175 |
acacaattattgattttagtgattgaaaaactcaaaccgaaaacatggagcaatgatactcgtaattctctcctagaaaaattgtttttctcttcccccg |
43929076 |
T |
|
| Q |
214 |
ttcctatgaatattattattcttgtctgtatctcc-ttccctcttatttaa---ctcatatgtattgcagcacaagaaggaggtttatggcaagcttatt |
309 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||| ||||||||||||||| ||| ||||||||| |||||| |||||| |||||| ||| ||||| |
|
|
| T |
43929075 |
ttcctatgaatattattattcttgtttctatctcctttccctcttatttaactcctcctatgtattggagcacatgaaggaaatttatgtcaatgttatt |
43928976 |
T |
|
| Q |
310 |
ataactgttacaatttgatgagtttccttcaacnnnnnnnnttacaattggatgagtttgcttttaaatgattggatatcaacaacatgaa-tgtatggt |
408 |
Q |
| |
|
||||| |||||||| || || ||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||| |||||||| |
|
|
| T |
43928975 |
ataacaattacaattgaataagcttccttcaa--aacaaaattacaattggatgagtttgcttttaaatgattggatatcaaaaaagtgaattgtatggt |
43928878 |
T |
|
| Q |
409 |
tttggtagaagggaaaactccattacaattttattctgattatggaatnnnnnnngaaatctcaacaaagtcactgcaagtttgggaatggctttgaatt |
508 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| || || ||||||||| ||||||||| |||||||||||| |
|
|
| T |
43928877 |
tttggtagaatggaaaactccattacaattttattctgattacggcataaaaaaagaaatctcagcaaagtcac--------------tggctttgaatt |
43928792 |
T |
|
| Q |
509 |
ggtacaattagcatgtaggagaagagatcatagagggaatttcatttaacaactaatatttccaatt |
575 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
43928791 |
ggtacaattagtatgtaggagaagagatcatagagtgaattgcatttaacaactaatatttccaatt |
43928725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 222 - 575
Target Start/End: Original strand, 29188151 - 29188494
Alignment:
| Q |
222 |
aatattattattcttgtctgtatctcctt-ccctcttatttaactcat---atgtattgcagcacaagaaggaggtttatggcaagcttattataactgt |
317 |
Q |
| |
|
||||||||||||||||| | ||||||||| |||||||||||||||| | ||||||| ||||||| |||||| |||||| ||| ||||||||||| | |
|
|
| T |
29188151 |
aatattattattcttgtttctatctcctttccctcttatttaactcctcctatgtattacagcacatgaaggaaatttatgtcaatcttattataacaat |
29188250 |
T |
|
| Q |
318 |
tacaatttgatgagtttccttcaacnnnnnnnnttacaa-ttggatgagtttgcttttaaatgattggatatcaacaacatgaat-gtatggttttggta |
415 |
Q |
| |
|
||||||| |||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||| |
|
|
| T |
29188251 |
tacaattggatgagcttccttcaa--aacaaaattacaaattggatgagtttgcttttaaatgattggatatcaaaaaagtgaattgtatggttttggta |
29188348 |
T |
|
| Q |
416 |
gaagggaaaactccattacaattttattctgattatggaatnnnnnnngaaatctcaacaaagtcactgcaagtttgggaatggctttgaattggtacaa |
515 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| || || ||||||||| ||||||| | ||||||||||||||||||| |
|
|
| T |
29188349 |
gaatggaaaactccattacaattttattctgattacggcataaaaaaagaaatctcagcaaagtc--------------attggctttgaattggtacaa |
29188434 |
T |
|
| Q |
516 |
ttagcatgtaggagaagagatcatagagggaatttcatttaacaactaatatttccaatt |
575 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
29188435 |
ttagtatgtaggagaagagatcatagaggaaattgcatttaacaactaatatttccaatt |
29188494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 69 - 228
Target Start/End: Original strand, 29186509 - 29186663
Alignment:
| Q |
69 |
aattaatccgtgtttctttttcttgtgtatcatttctctcactcacacacaattattgcttctagtgattgaaaaactcaaatcgaaaacatggagcaat |
168 |
Q |
| |
|
||||||| |||||||||||||| ||||||||| ||| || ||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
29186509 |
aattaatttgtgtttctttttctagtgtatcat------cacccagacacaattattgcttttagtgattgaaaaactcaaaccgaaaacatggagcaat |
29186602 |
T |
|
| Q |
169 |
gatactcgtaattctttcttggaaaaattgtttttctctt-cctcattcctatgaatatta |
228 |
Q |
| |
|
||||||||||||||| || ||| ||||||||||||||||| || ||||||||| ||||||| |
|
|
| T |
29186603 |
gatactcgtaattctctcctgggaaaattgtttttctcttcccccattcctataaatatta |
29186663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 69 - 575
Target Start/End: Original strand, 33628725 - 33629227
Alignment:
| Q |
69 |
aattaatccgtgtttctttttcttgtgtatcatttctctcactcacacacaattattgcttctagtgattgaaaaactcaaa-tcgaaaacatggagcaa |
167 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
33628725 |
aattaatccgtgtttctttttcttgtgtatcatttctctcactcacacacaattattg-ttctagtgattgaaaaactcaaaatcgaaaacatggagcaa |
33628823 |
T |
|
| Q |
168 |
tgatactcgtaattctttcttggaaaaattgtttttctcttcctcattcctatgaatattattattcttgtctgtatctccttccctcttatttaactca |
267 |
Q |
| |
|
||||||||||||||| ||| ||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
33628824 |
tgatactcgtaattcattcctgggaaaattgtttttctcttccccatacctatgaatattattattcttgtctgtatctccttccgtcttatttaactca |
33628923 |
T |
|
| Q |
268 |
tatgtattgcagcacaagaaggaggtttatggcaagcttattataactgttacaatttgatgagtttccttcaacnnnnnnnnttacaattggatgagtt |
367 |
Q |
| |
|
||||||||||| |||| |||||| |||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
33628924 |
tatgtattgcaacacatgaaggaaatttatgtcaagcttattataacagttacaatttgatgagtttccttcaa--aaataaattacaattggatgagtt |
33629021 |
T |
|
| Q |
368 |
tgcttttaaatgattggatatcaacaacatgaatgtatggttttggtagaagggaaaactccattacaattttattctgattatggaatnnnnnnngaaa |
467 |
Q |
| |
|
|||||||||||| |||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| | || |
|
|
| T |
33629022 |
tgcttttaaatgtttggatataaacaaaatgaatgtatggttttggtagaatagaaaactccattacaattttattctgattacggaataaaaaaagtaa |
33629121 |
T |
|
| Q |
468 |
tctcaacaaagtcactgcaagtttgggaatggctttgaattggtacaattagcatgtaggagaagagatcatagagggaatttcatttaacaactaatat |
567 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33629122 |
tc-caacaaagtcactgcaagtttgggaatggctttgaattggt-caattagcatgtaggacaagagatcatagagggaatttcatttaacaactaatat |
33629219 |
T |
|
| Q |
568 |
ttccaatt |
575 |
Q |
| |
|
|||||||| |
|
|
| T |
33629220 |
ttccaatt |
33629227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 69 - 575
Target Start/End: Complemental strand, 23344585 - 23344095
Alignment:
| Q |
69 |
aattaatccgtgtttctttttcttgtgtatcatttctctcactcacacacaattattgcttctagtgattgaaaaactcaaatcgaaaacatggagcaat |
168 |
Q |
| |
|
||||||| |||||||||||||| ||||||||| ||| || ||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
23344585 |
aattaatttgtgtttctttttctagtgtatcat------cacccagacacaattattgcttttagtgattgaaaaactcaaaccgaaaacatggagcaat |
23344492 |
T |
|
| Q |
169 |
gatactcgtaattctttcttggaaaaattgtttttctctt-cctcattcctatgaatattattattcttgtctgtatctcc-ttccctcttatttaa--- |
263 |
Q |
| |
|
||||||||||||||| || | | ||||||||||||||||| || | ||||||||||||||||||||||||| | ||||||| ||||||||||||||| |
|
|
| T |
23344491 |
gatactcgtaattctctcctaggaaaattgtttttctcttcccccgttcctatgaatattattattcttgtttctatctcctttccctcttatttaactc |
23344392 |
T |
|
| Q |
264 |
ctcatatgtattgcagcacaagaaggaggtttatggcaagcttattataactgttacaatttgatgagtttccttcaacnnnnnnnnttac-aattggat |
362 |
Q |
| |
|
||| |||||||| || |||| ||||| |||||| ||| ||||||||||| |||||||| |||||| ||||| ||| |||| |||||||| |
|
|
| T |
23344391 |
ctcctatgtattacatcacataaaggaaatttatgtcaatcttattataacaattacaattggatgagcttcctccaa--aacaaaattacaaattggat |
23344294 |
T |
|
| Q |
363 |
gagtttgcttttaaatgattggatatcaacaacatgaa-tgtatggttttggtagaagggaaaactccattacaattttattctgattatggaatnnnnn |
461 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||| |||||||||||||||||| ||||||||||||||||||||||||||||||| | || |
|
|
| T |
23344293 |
gagtttgcttttaaatgattggatatcaaaaaagtgaattgtatggttttggtagaatggaaaactccattacaattttattctgatta-cgcataaaaa |
23344195 |
T |
|
| Q |
462 |
nngaaatctcaacaaagtcactgcaagtttgggaatggctttgaattggtacaattagcatgtaggagaagagatcatagagggaatttcatttaacaac |
561 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
23344194 |
aagaaatctcagcaaagtcac--------------tggctttgaattggtacaattagtatgtaggagaagagatcatagaggaaattgcatttaacaac |
23344109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 69 - 456
Target Start/End: Original strand, 1367049 - 1367434
Alignment:
| Q |
69 |
aattaatccgtgtttctttttcttgtgtatcatttctctcactcacacacaattattgcttctagtgattgaaaaactcaaa-tcgaaaacatggagcaa |
167 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1367049 |
aattaatccgtgtttctttttcttgtgtatcatttctctcactcacacacaattattgcttctaatgattgaaaaactcaaaatcgaaaacatggagcaa |
1367148 |
T |
|
| Q |
168 |
tgatactcgtaattctttcttggaaaaattgtttttctcttcctcattcctatgaatattattattcttgtctgtatctccttccctcttatttaactca |
267 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||| ||||||||| |||||| |
|
|
| T |
1367149 |
tgatactcgtaattctttcctgggaaaattgtttttctcttccccatacctatgaatattattattcttgtccgtatctcctttcctcttattcaactca |
1367248 |
T |
|
| Q |
268 |
tatgtattgcagcacaagaaggaggtttatggcaagcttattataactgttacaatttgatgagtttccttcaacnnnnnnnnttacaattggatgagtt |
367 |
Q |
| |
|
|||||||||||||||| |||||| |||||| ||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
1367249 |
tatgtattgcagcacatgaaggaaatttatgtcaagcttattataacagttacaatttgatgagtttccttaaa--agtaaaattacaattggatgagtt |
1367346 |
T |
|
| Q |
368 |
tgcttttaaatgattggatatcaacaacatgaatgtatggttttggtagaagggaaaactccattacaattttattctgattatggaat |
456 |
Q |
| |
|
|| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1367347 |
tg-ttttaaatgattggatatcaacaaaatgaatgtatggttttggtagaatggaaaactccattacaattttattctgattacggaat |
1367434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 79 - 445
Target Start/End: Complemental strand, 19311764 - 19311394
Alignment:
| Q |
79 |
tgtttctttttcttgtgtatcatttctctcactcacacacaattattgcttctagtgattgaaaaactcaaatcgaaaacatggagcaatgatactcgta |
178 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
19311764 |
tgtttctttttctagtgtatcatttctctcactcagacacaattattgcttttagtgattgaaaaactcaaaccgaaaacatggagcaatgatacttgta |
19311665 |
T |
|
| Q |
179 |
attctttcttggaaaaattgtttttctctt-cctcattcctatgaatattattattcttgtctgtatctcc-ttccctcttatttaa---ctcatatgta |
273 |
Q |
| |
|
||||| || ||| ||||||||||||||||| |||| ||||||||||||||||||||||||| | ||||||| ||||||||||||||| ||| ||| || |
|
|
| T |
19311664 |
attctctcctgggaaaattgtttttctcttccctcgttcctatgaatattattattcttgtttctatctcctttccctcttatttaactcctcctatata |
19311565 |
T |
|
| Q |
274 |
ttgcagcacaagaaggaggtttatggcaagcttattataactgttacaatttgatgagtttccttcaacnnnnnnnnttacaattggatgagtttgcttt |
373 |
Q |
| |
|
|||||||||| |||||| ||||| ||| ||||||||||| |||||||| |||||| ||||||||| |||||||||||||||||| |||| |
|
|
| T |
19311564 |
ttgcagcacatgaaggaaacttatgtcaatcttattataacaattacaattggatgagcttccttcaa--aacaaaattacaattggatgagtttacttt |
19311467 |
T |
|
| Q |
374 |
taaatgattggatatcaacaacatgaa-tgtatggttttggtagaagggaaaactccattacaattttattct |
445 |
Q |
| |
|
|||||||||| ||||||| || |||| |||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
19311466 |
taaatgattgaatatcaaaaaagtgaattgtatggttttggtagaatggaaaactccattacaattttattct |
19311394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 497 - 575
Target Start/End: Complemental strand, 19311344 - 19311272
Alignment:
| Q |
497 |
tggctttgaattggtacaattagcatgtaggagaagagatcatagagggaatttcatttaacaactaatatttccaatt |
575 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
19311344 |
tggctttgaattggtacaattagtatgtaggag------tcatagagggaattgcatttaacaactaatatttccaatt |
19311272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 218; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 69 - 341
Target Start/End: Original strand, 10179325 - 10179598
Alignment:
| Q |
69 |
aattaatccgtgtttctttttcttgtgtatcatttctctcactcacacacaattattgcttctagtgattgaaaaactcaaa-tcgaaaacatggagcaa |
167 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||| |
|
|
| T |
10179325 |
aattaatccgtgtttctttttcttgtgtatcatttctctcactcacacacaattattgcttctattgattgaagaactcaaaatcgaaaacatggagcaa |
10179424 |
T |
|
| Q |
168 |
tgatactcgtaattctttcttggaaaaattgtttttctcttcctcattcctatgaatattattattcttgtctgtatctccttccctcttatttaactca |
267 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
10179425 |
tgatactcgtaattctttcctgggaaaattgtttttctcttccccatacctatgaatattattattcttgtccgtatctccttccctcttatttaactca |
10179524 |
T |
|
| Q |
268 |
tatgtattgcagcacaagaaggaggtttatggcaagcttattataactgttacaatttgatgagtttccttcaa |
341 |
Q |
| |
|
|||||||||||||||| |||||| |||||| ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
10179525 |
tatgtattgcagcacatgaaggaaatttatgtcaagcttattataacagttacaatttgatgagtttccttcaa |
10179598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 69 - 575
Target Start/End: Complemental strand, 24009134 - 24008642
Alignment:
| Q |
69 |
aattaatccgtgtttctttttcttgtgtatcatttctctcactcacacacaattattgcttctagtgattgaaaaactcaaatcgaaaacatggagcaat |
168 |
Q |
| |
|
||||||| |||||||||||||| ||||||||| ||| || ||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
24009134 |
aattaatttgtgtttctttttctagtgtatcat------cacccagacacaattattgcttttagtgattgaaaaactcaaaccgaaaacatggagcaat |
24009041 |
T |
|
| Q |
169 |
gatactcgtaattctttcttggaaaaattgtttttctctt--cctcattcctatgaatattattattcttgtctgtatctcc-ttccctcttatttaa-- |
263 |
Q |
| |
|
||||||||||||||| || ||| ||||||||||||||||| || | ||||||||||||||||||||||||| | ||||||| ||||||||||||||| |
|
|
| T |
24009040 |
gatactcgtaattctctcctgggaaaattgtttttctcttccccccgttcctatgaatattattattcttgtttctatctcctttccctcttatttaact |
24008941 |
T |
|
| Q |
264 |
-ctcatatgtattgcagcacaagaaggaggtttatggcaagcttattataactgttacaatttgatgagtttccttcaacnnnnnnnnttac-aattgga |
361 |
Q |
| |
|
||| |||||| | ||||||| |||||| |||||| ||| ||||||||||| |||||||| |||||| ||||||||| |||| ||||||| |
|
|
| T |
24008940 |
cctcctatgtactacagcacatgaaggaaatttatgtcaatcttattataacaattacaattggatgagcttccttcaa--aacaaaattacaaattgga |
24008843 |
T |
|
| Q |
362 |
tgagtttgcttttaaatgattggatatcaacaacatgaa-tgtatggttttggtagaagggaaaactccattacaattttattctgattatggaatnnnn |
460 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||| |||||||||||||||||| ||||||||||||||||||||||||||||||| || || |
|
|
| T |
24008842 |
tgagtttgcttttaaatgattggatatcaaaaaagtgaattgtatggttttggtagaatggaaaactccattacaattttattctgattacggcataaaa |
24008743 |
T |
|
| Q |
461 |
nnngaaatctcaacaaagtcactgcaagtttgggaatggctttgaattggtacaattagcatgtaggagaagagatcatagagggaatttcatttaacaa |
560 |
Q |
| |
|
||||||||| ||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
24008742 |
aaagaaatctcagcaaagtc--------------attggctttgaattggtacaattagtatgtaggagaagagatcatagagggaattgcatttaacaa |
24008657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 69 - 313
Target Start/End: Original strand, 32088901 - 32089150
Alignment:
| Q |
69 |
aattaatccgtgtttctttttcttgtgtatcatttctctcactcacacacaattattgcttctagtgattgaaaaactcaaatcgaaaacatggagcaat |
168 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||| | | |
|
|
| T |
32088901 |
aattaacccgtgtttctttttcttgtgtatcatttctctcattcacacacaattattgcttttagtgattgaaaaactcaaactgaaaacatggagtatt |
32089000 |
T |
|
| Q |
169 |
gatactcgtaattctttcttggaaaaattgtttttctctt-cctcattcctatgaatattattattcttgtctgtatctcc-ttccctcttatttaa--- |
263 |
Q |
| |
|
||||||||| ||||| | ||| ||||||||||||||||| || || |||||||||||||||||||||||| || |||||| ||||||||||||||| |
|
|
| T |
32089001 |
gatactcgttattctcttctgggaaaattgtttttctcttcccccactcctatgaatattattattcttgtttgaatctcctttccctcttatttaactc |
32089100 |
T |
|
| Q |
264 |
ctcatatgtattgcagcacaagaaggaggtttatggcaagcttattataa |
313 |
Q |
| |
|
||| ||| |||||||||| | |||||| |||||| ||||||||| |||| |
|
|
| T |
32089101 |
ctcgtatctattgcagcatatgaaggaaatttatgccaagcttatgataa |
32089150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 69 - 313
Target Start/End: Original strand, 52871380 - 52871633
Alignment:
| Q |
69 |
aattaatccgtgtttctttt-tcttgtgtatcatttctctcactcacacaca---attattgcttctagtgattgaaaaactcaaatcgaaaacatggag |
164 |
Q |
| |
|
|||||| |||||||| |||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||| | |
|
|
| T |
52871380 |
aattaacccgtgttttttttttcttgtgtatcatttctctcactcacacacaattattattgcttttagtgattgaaaaactcaaactgaaaacatggtg |
52871479 |
T |
|
| Q |
165 |
caatgatactcgtaattct-ttcttggaaaaattgtttttctctt-cctcattcctatgaatattattattcttgtctgtatctcc-ttccctcttattt |
261 |
Q |
| |
|
| ||||||| || ||||| |||| || ||||||||||||||||| || || |||||||||||||||||||||||| || |||||| ||||||||||||| |
|
|
| T |
52871480 |
tattgatactagttattctcttctagg-aaaattgtttttctcttcccccactcctatgaatattattattcttgtttgaatctcctttccctcttattt |
52871578 |
T |
|
| Q |
262 |
aa---ctcatatgtattgcagcacaagaaggaggtttatggcaagcttattataa |
313 |
Q |
| |
|
|| ||| ||| |||||||||| | |||||| |||||| ||||||||| |||| |
|
|
| T |
52871579 |
aactcctcgtatctattgcagcatatgaaggaaatttatgccaagcttatgataa |
52871633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 522 - 575
Target Start/End: Original strand, 52107552 - 52107605
Alignment:
| Q |
522 |
tgtaggagaagagatcatagagggaatttcatttaacaactaatatttccaatt |
575 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
52107552 |
tgtaggagaagagatcatatagggaattgcatttaacaactaatatttccaatt |
52107605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 375 - 426
Target Start/End: Original strand, 32089301 - 32089353
Alignment:
| Q |
375 |
aaatgattggatatcaacaacatgaa-tgtatggttttggtagaagggaaaac |
426 |
Q |
| |
|
|||||||||||||||||||| ||||| | ||| |||||||||||| ||||||| |
|
|
| T |
32089301 |
aaatgattggatatcaacaaaatgaattttatagttttggtagaatggaaaac |
32089353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 522 - 569
Target Start/End: Complemental strand, 42007832 - 42007785
Alignment:
| Q |
522 |
tgtaggagaagagatcatagagggaatttcatttaacaactaatattt |
569 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
42007832 |
tgtaggagacgagatcatagagggaattgcatttaccaactaatattt |
42007785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 521 - 557
Target Start/End: Original strand, 26395131 - 26395167
Alignment:
| Q |
521 |
atgtaggagaagagatcatagagggaatttcatttaa |
557 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
26395131 |
atgtaggagaagagatcatagagagaattgcatttaa |
26395167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 160
Target Start/End: Complemental strand, 24229594 - 24229531
Alignment:
| Q |
95 |
gtatcatttctctcactcacacacaattattgcttctagtgattgaaaaactcaaatcgaaaacat |
160 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||| ||| ||| ||||| |||||| |||||||| |
|
|
| T |
24229594 |
gtatcatttctctcactcacacaccattattg-ttc-agtcattcaaaaaatcaaattgaaaacat |
24229531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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