View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2465_low_20 (Length: 301)

Name: NF2465_low_20
Description: NF2465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2465_low_20
NF2465_low_20
[»] chr2 (4 HSPs)
chr2 (70-227)||(41340069-41340226)
chr2 (70-227)||(28266954-28267114)
chr2 (104-227)||(12774234-12774360)
chr2 (80-227)||(35670594-35670743)
[»] chr1 (3 HSPs)
chr1 (80-235)||(25921705-25921860)
chr1 (70-168)||(43407209-43407306)
chr1 (70-227)||(18472730-18472889)
[»] chr8 (2 HSPs)
chr8 (104-227)||(3189279-3189401)
chr8 (128-220)||(22635876-22635967)
[»] chr6 (1 HSPs)
chr6 (70-227)||(13773225-13773384)
[»] chr7 (2 HSPs)
chr7 (70-168)||(10288633-10288730)
chr7 (70-227)||(48653639-48653798)
[»] chr3 (1 HSPs)
chr3 (70-168)||(7336536-7336633)
[»] chr5 (3 HSPs)
chr5 (70-227)||(42861620-42861779)
chr5 (104-227)||(25101766-25101888)
chr5 (104-227)||(25160859-25160981)
[»] chr4 (2 HSPs)
chr4 (79-223)||(13652749-13652894)
chr4 (79-223)||(13660874-13661019)


Alignment Details
Target: chr2 (Bit Score: 114; Significance: 8e-58; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 70 - 227
Target Start/End: Complemental strand, 41340226 - 41340069
Alignment:
Q  70 tatcgaacaaaaataataagaagagaaataagttttttatgaaagatttcttttgtcgtgtgcatgatgtggtataattttttgtgtagttgcctaagtt 169  Q
    ||||||||| ||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||| ||||| |||| |||||||    
T  41340226 tatcgaacagaaataataataagagaaataagctttttatgaaagattttttttgtcgtgtgcatgatgtggtattattttctgtgtggttgtctaagtt 41340127  T
Q  170 gcggggattgcatatatttttattctcataacatatgcatttttggtgtgccttagtg 227  Q
    | ||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  41340126 gtggggattgcatatatttttattctcataatatgtgcatttttggtgtgccttagtg 41340069  T

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Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 70 - 227
Target Start/End: Complemental strand, 28267114 - 28266954
Alignment:
Q  70 tatcgaacaaaaataataagaagagaaataagttttttatgaaagatttcttttgtcgtgtgcatgatgtggtataatt---ttttgtgtagttgcctaa 166  Q
    |||||||| |||||||||||||| ||||| ||   |||||||||||||||||||||| ||| |||||||| || | |||   || ||||| |||||||||    
T  28267114 tatcgaactaaaataataagaagggaaatgagccctttatgaaagatttcttttgtcatgtacatgatgttgtgttattactttctgtgtggttgcctaa 28267015  T
Q  167 gttgcggggattgcatatatttttattctcataacatatgcatttttggtgtgccttagtg 227  Q
    || |||| |||||||| |||||||||| |||| ||||| ||||||||||||||||||||||    
T  28267014 gtggcggagattgcatctatttttattatcatgacataagcatttttggtgtgccttagtg 28266954  T

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Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 104 - 227
Target Start/End: Complemental strand, 12774360 - 12774234
Alignment:
Q  104 ttttatgaaagatttcttttgtcgtgtgcatgatgtggtataatt---ttttgtgtagttgcctaagttgcggggattgcatatatttttattctcataa 200  Q
    ||||||||||||||||||||||| ||| |||||||| |||| |||   || ||||| ||||||||||| ||||||||||||| | |||||||| |||| |    
T  12774360 ttttatgaaagatttcttttgtcatgtacatgatgttgtattattactttctgtgtggttgcctaagtggcggggattgcatctgtttttattatcatga 12774261  T
Q  201 catatgcatttttggtgtgccttagtg 227  Q
    |||| |||||| |||||||||||||||    
T  12774260 cataagcatttgtggtgtgccttagtg 12774234  T

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Target: chr2; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 80 - 227
Target Start/End: Complemental strand, 35670743 - 35670594
Alignment:
Q  80 aaataataagaagagaaataagttttttatgaaagatttcttttgtcgtgtgcatgatgtggtataatt---ttttgtgtagttgcctaagttgcgggga 176  Q
    |||||||||| ||| |||| ||  ||||||||||||||||||||||| |||  | ||||| || | |||   || ||||| ||||||||||| ||||| |    
T  35670743 aaataataagcagataaatgagccttttatgaaagatttcttttgtcatgtataagatgtcgtgttattactttctgtgtggttgcctaagtggcggg-a 35670645  T
Q  177 ttgcatatatttttattctcataacatatgcatttttggtgtgccttagtg 227  Q
    |||||| |||||||||| |||| ||||| | ||||||||||||||||||||    
T  35670644 ttgcatctatttttattatcatgacataagaatttttggtgtgccttagtg 35670594  T

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Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 80 - 235
Target Start/End: Original strand, 25921705 - 25921860
Alignment:
Q  80 aaataataagaagagaaataagttttttatgaaagatttcttttgtcgtgtgcatgatgtggtataattttttgtgtagttgcctaagttgcggggattg 179  Q
    ||||||||||||||  ||||||  |||||||| |||||||||||||| ||||||||||||||||| | ||| |||||  |||||||||| ||||||||||    
T  25921705 aaataataagaagaacaataagacttttatgagagatttcttttgtcatgtgcatgatgtggtattactttctgtgtgattgcctaagtggcggggattg 25921804  T
Q  180 catatatttttattctcataacatatgcatttttggtgtgccttagtgttgggtta 235  Q
    | | |||||||||| |||| |||||||||||||||||||||||||||| |||||||    
T  25921805 cctctatttttattatcatgacatatgcatttttggtgtgccttagtggtgggtta 25921860  T

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Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 70 - 168
Target Start/End: Complemental strand, 43407306 - 43407209
Alignment:
Q  70 tatcgaacaaaaataataagaagagaaataagttttttatgaaagatttcttttgtcgtgtgcatgatgtggtataattttttgtgtagttgcctaagt 168  Q
    ||||||||| |||||||| |||||||||||||||||  |||||||||||||||||||||||| |||||||||||| ||||| |||||  ||||||||||    
T  43407306 tatcgaacataaataataggaagagaaataagttttc-atgaaagatttcttttgtcgtgtgtatgatgtggtattattttctgtgtgattgcctaagt 43407209  T

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Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 70 - 227
Target Start/End: Complemental strand, 18472889 - 18472730
Alignment:
Q  70 tatcgaacaaaaataataagaagagaaataagttttttatgaaagatttcttttgtcgtgtgcatgatgtggtataatt---ttttgtgtagttgcctaa 166  Q
    ||||||||  ||||||||||||||||||| ||  ||||||||||||||||||||||| |||  | ||||| || | |||   || ||| | |||||||||    
T  18472889 tatcgaactgaaataataagaagagaaatgagccttttatgaaagatttcttttgtcatgtataagatgttgtgttattactttctgtctggttgcctaa 18472790  T
Q  167 gttgcggggattgcatatatttttattctcataacatatgcatttttggtgtgccttagtg 227  Q
    || ||||| ||||||| |||||||||| |||| ||||| |||||||| |||||||||||||    
T  18472789 gtggcggg-attgcatctatttttattatcatgacataagcattttttgtgtgccttagtg 18472730  T

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Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 104 - 227
Target Start/End: Complemental strand, 3189401 - 3189279
Alignment:
Q  104 ttttatgaaagatttcttttgtcgtgtgcatgatgtggtataattttttgtgtagttgcctaagttgcggggattgcatatatttttattctcataacat 203  Q
    |||||||| || |||||||||||  ||||||||||| |||| | ||| ||||| ||||||||||| ||||||||||||| || ||| |||||||| ||||    
T  3189401 ttttatgagagttttcttttgtcacgtgcatgatgtagtattactttctgtgtggttgcctaagtggcggggattgcatcta-tttgattctcatgacat 3189303  T
Q  204 atgcatttttggtgtgccttagtg 227  Q
    ||||||||||||||||||||||||    
T  3189302 atgcatttttggtgtgccttagtg 3189279  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 128 - 220
Target Start/End: Complemental strand, 22635967 - 22635876
Alignment:
Q  128 tgtgcatgatgtggtataattttttgtgtagttgcctaagttgcggggattgcatatatttttattctcataacatatgcatttttggtgtgc 220  Q
    ||||||||||||||||| | ||| ||||| ||||||||||| ||||||||||||| || ||| |||||||| |||||||||||||||| ||||    
T  22635967 tgtgcatgatgtggtattactttctgtgtggttgcctaagtggcggggattgcatcta-tttgattctcatgacatatgcatttttggagtgc 22635876  T

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Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 70 - 227
Target Start/End: Complemental strand, 13773384 - 13773225
Alignment:
Q  70 tatcgaacaaaaataataagaagagaaataagttttttatgaaagatttcttttgtcgtgtgcatgatgtgg---tataattttttgtgtagttgcctaa 166  Q
    ||||||||  ||||||||||||||||||| ||  ||||||||||||||||||||||| |||  | ||||| |   ||| | ||| ||||| |||||||||    
T  13773384 tatcgaactgaaataataagaagagaaatgagccttttatgaaagatttcttttgtcatgtataggatgttgagttattactttctgtgtggttgcctaa 13773285  T
Q  167 gttgcggggattgcatatatttttattctcataacatatgcatttttggtgtgccttagtg 227  Q
    || ||||| ||||||| |||||||||| |||| ||||| ||||||||||||||||||||||    
T  13773284 gtggcggg-attgcatctatttttattatcatgacataagcatttttggtgtgccttagtg 13773225  T

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Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 70 - 168
Target Start/End: Complemental strand, 10288730 - 10288633
Alignment:
Q  70 tatcgaacaaaaataataagaagagaaataagttttttatgaaagatttcttttgtcgtgtgcatgatgtggtataattttttgtgtagttgcctaagt 168  Q
    ||||||||| |||||||| |||||||||||||||||  |||||||||||||||||||||||| |||||||||||| ||||| |||||  ||||||||||    
T  10288730 tatcgaacataaataataggaagagaaataagttttc-atgaaagatttcttttgtcgtgtgtatgatgtggtattattttctgtgtgattgcctaagt 10288633  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 70 - 227
Target Start/End: Complemental strand, 48653798 - 48653639
Alignment:
Q  70 tatcgaacaaaaataataagaagagaaataagttttttatgaaagatttcttttgtcgtgtgcatgatgtggtataatt---ttttgtgtagttgcctaa 166  Q
    ||||||||  ||||||||||||||||||| ||  |||||||||||||||||||| || |||  | ||||| || | |||   || ||||| |||||||||    
T  48653798 tatcgaactgaaataataagaagagaaatgagccttttatgaaagatttcttttatcatgtataagatgttgtgttattactttctgtgtggttgcctaa 48653699  T
Q  167 gttgcggggattgcatatatttttattctcataacatatgcatttttggtgtgccttagtg 227  Q
    || ||||| ||||||| |||||||||| |||| ||||| ||||||||||||||||||||||    
T  48653698 gtggcggg-attgcatctatttttattatcatgacataagcatttttggtgtgccttagtg 48653639  T

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Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 70 - 168
Target Start/End: Complemental strand, 7336633 - 7336536
Alignment:
Q  70 tatcgaacaaaaataataagaagagaaataagttttttatgaaagatttcttttgtcgtgtgcatgatgtggtataattttttgtgtagttgcctaagt 168  Q
    ||||||||| |||||||| |||||||||||||||||  |||||||||||||||||||||||| |||||||||||| ||||| |||||  ||||||||||    
T  7336633 tatcgaacataaataataggaagagaaataagttttc-atgaaagatttcttttgtcgtgtgtatgatgtggtattattttctgtgtgattgcctaagt 7336536  T

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Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 70 - 227
Target Start/End: Original strand, 42861620 - 42861779
Alignment:
Q  70 tatcgaacaaaaataataagaagagaaataagttttttatgaaagatttcttttgtcgtgtgcatgatgtggtataatttttt---gtgtagttgcctaa 166  Q
    ||||||||  ||||||||||||||||||| ||  ||||||||||||||||||||||| |||  | ||||| || | |||  ||   |||| |||| ||||    
T  42861620 tatcgaactgaaataataagaagagaaatgagccttttatgaaagatttcttttgtcatgtataagatgttgtgttattactttcagtgtggttgtctaa 42861719  T
Q  167 gttgcggggattgcatatatttttattctcataacatatgcatttttggtgtgccttagtg 227  Q
    || ||||| ||||||| |||||||||| |||| ||||| ||||||||||||||||||||||    
T  42861720 gtggcggg-attgcatctatttttattatcatgacataagcatttttggtgtgccttagtg 42861779  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 104 - 227
Target Start/End: Complemental strand, 25101888 - 25101766
Alignment:
Q  104 ttttatgaaagatttcttttgtcgtgtgcatgatgtggtataattttttgtgtagttgcctaagttgcggggattgcatatatttttattctcataacat 203  Q
    |||||||| || |||| |||||| ||||||||||||||||| ||||| ||||| ||||| ||||| ||||||||||||| || ||| ||| |||| | ||    
T  25101888 ttttatgagagttttcatttgtcatgtgcatgatgtggtattattttctgtgtggttgcttaagtggcggggattgcatcta-tttgattatcatgatat 25101790  T
Q  204 atgcatttttggtgtgccttagtg 227  Q
    ||||||||||| ||| ||||||||    
T  25101789 atgcatttttgatgtaccttagtg 25101766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 104 - 227
Target Start/End: Complemental strand, 25160981 - 25160859
Alignment:
Q  104 ttttatgaaagatttcttttgtcgtgtgcatgatgtggtataattttttgtgtagttgcctaagttgcggggattgcatatatttttattctcataacat 203  Q
    |||||||| || |||| |||||| ||||||||||||||||| ||||| ||||| ||||| ||||| ||||||||||||| || ||| ||| |||| | ||    
T  25160981 ttttatgagagttttcatttgtcatgtgcatgatgtggtattattttctgtgtggttgcttaagtggcggggattgcatcta-tttgattatcatgatat 25160883  T
Q  204 atgcatttttggtgtgccttagtg 227  Q
    ||||||||||| ||| ||||||||    
T  25160882 atgcatttttgatgtaccttagtg 25160859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 79 - 223
Target Start/End: Original strand, 13652749 - 13652894
Alignment:
Q  79 aaaataataagaagagaaa-taagttttttatgaaagatttcttttgtcgtgtgcatgat---gtggtataattttttgtgtagttgcctaagttgcggg 174  Q
    ||||||||||||||||||| ||||  ||| ||| ||||  ||||||||| ||||||||||   ||| ||| |||||||||||  |||||| ||| |||||    
T  13652749 aaaataataagaagagaaaataagacttt-atggaagacctcttttgtcatgtgcatgataatgtgctattattttttgtgtgattgccttagtggcggg 13652847  T
Q  175 gattgcatatatttttattctcataacatatgcatttttggtgtgcctt 223  Q
    |||||||| ||  |||||| || | |||||||  | |||||||||||||    
T  13652848 gattgcatctacctttattatcgtgacatatg--tatttggtgtgcctt 13652894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 79 - 223
Target Start/End: Original strand, 13660874 - 13661019
Alignment:
Q  79 aaaataataagaagagaaa-taagttttttatgaaagatttcttttgtcgtgtgcatgat---gtggtataattttttgtgtagttgcctaagttgcggg 174  Q
    ||||||||||||||||||| ||||  ||| ||| ||||  ||||||||| ||||||||||   ||| ||| |||||||||||  |||||| ||| |||||    
T  13660874 aaaataataagaagagaaaataagacttt-atggaagacctcttttgtcatgtgcatgataatgtgctattattttttgtgtgattgccttagtggcggg 13660972  T
Q  175 gattgcatatatttttattctcataacatatgcatttttggtgtgcctt 223  Q
    |||||||| ||  |||||| || | |||||||  | |||||||||||||    
T  13660973 gattgcatctacctttattatcgtgacatatg--tatttggtgtgcctt 13661019  T

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