View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2465_low_28 (Length: 241)

Name: NF2465_low_28
Description: NF2465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2465_low_28
NF2465_low_28
[»] chr6 (1 HSPs)
chr6 (20-241)||(21979202-21979423)
[»] chr5 (3 HSPs)
chr5 (101-143)||(9120127-9120169)
chr5 (82-141)||(42561969-42562028)
chr5 (103-143)||(179422-179462)
[»] chr4 (20 HSPs)
chr4 (85-143)||(7908666-7908724)
chr4 (82-143)||(48864399-48864460)
chr4 (81-143)||(7766006-7766068)
chr4 (81-143)||(7786828-7786890)
chr4 (85-143)||(7790444-7790502)
chr4 (85-143)||(7813841-7813899)
chr4 (85-143)||(7878747-7878805)
chr4 (85-143)||(48853045-48853103)
chr4 (102-143)||(7773481-7773522)
chr4 (102-143)||(45365876-45365917)
chr4 (102-143)||(48147369-48147410)
chr4 (30-94)||(50250322-50250386)
chr4 (85-143)||(7801001-7801059)
chr4 (85-142)||(7771760-7771817)
chr4 (82-143)||(45371710-45371771)
chr4 (102-143)||(45384548-45384589)
chr4 (102-143)||(48156085-48156126)
chr4 (114-143)||(48903319-48903348)
chr4 (102-143)||(49038534-49038575)
chr4 (114-143)||(49043836-49043865)
[»] chr3 (3 HSPs)
chr3 (102-143)||(11005584-11005625)
chr3 (102-143)||(11024159-11024200)
chr3 (103-143)||(11015148-11015188)
[»] chr8 (1 HSPs)
chr8 (115-143)||(15349247-15349275)


Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 20 - 241
Target Start/End: Original strand, 21979202 - 21979423
Alignment:
Q  20 acatagtttgttccaatgatatcataattttttgtagagtatacagggaaaatgtcactacgaggaagaacaagtttattattccaagaggaacgcactt 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  21979202 acatagtttgttccaatgatatcataattttttgtagagtatacagggaaaatgtcacaacgaggaagaacaagtttcttattccaagaggaacgcactt 21979301  T
Q  120 tgtattctttcatcacccatatttttgatgtgttatttctataatcgacatagaatagactatgaaaatctccaaatacccacaaatgacgatgtgaaaa 219  Q
    ||||||||||||||||||||||||||||||| | ||||| |||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||    
T  21979302 tgtattctttcatcacccatatttttgatgtatgatttccataatcgacatccaatagactaagaaaatctccaaatacccacaaatgacgatgtgaaaa 21979401  T
Q  220 ctgatagtgaaaatcatgatct 241  Q
    ||||||||||||||||||||||    
T  21979402 ctgatagtgaaaatcatgatct 21979423  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 101 - 143
Target Start/End: Complemental strand, 9120169 - 9120127
Alignment:
Q  101 ttccaagaggaacgcactttgtattctttcatcacccatattt 143  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  9120169 ttccaagaggaatgcactttgtattctttcatcacccatattt 9120127  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 141
Target Start/End: Original strand, 42561969 - 42562028
Alignment:
Q  82 aggaagaacaagtttattattccaagaggaacgcactttgtattctttcatcacccatat 141  Q
    ||||||||||||  | ||| ||||||| ||| ||||||||||||||||||||||||||||    
T  42561969 aggaagaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatat 42562028  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 179462 - 179422
Alignment:
Q  103 ccaagaggaacgcactttgtattctttcatcacccatattt 143  Q
    |||||| ||| ||||||||||||||||||||||||||||||    
T  179462 ccaagatgaatgcactttgtattctttcatcacccatattt 179422  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 85 - 143
Target Start/End: Complemental strand, 7908724 - 7908666
Alignment:
Q  85 aagaacaagtttattattccaagaggaacgcactttgtattctttcatcacccatattt 143  Q
    |||||||||  | ||||||||||| ||| ||||||||||||||||||||||||||||||    
T  7908724 aagaacaagagttttattccaagatgaatgcactttgtattctttcatcacccatattt 7908666  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 143
Target Start/End: Complemental strand, 48864460 - 48864399
Alignment:
Q  82 aggaagaacaagtttattattccaagaggaacgcactttgtattctttcatcacccatattt 143  Q
    ||||||||||||  | ||| ||||||| ||| ||||||||||||||||||||||||||||||    
T  48864460 aggaagaacaagaatcttagtccaagacgaatgcactttgtattctttcatcacccatattt 48864399  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 81 - 143
Target Start/End: Complemental strand, 7766068 - 7766006
Alignment:
Q  81 gaggaagaacaagtttattattccaagaggaacgcactttgtattctttcatcacccatattt 143  Q
    |||||||||||||| | ||| |||| || |||  |||||||||||||||||||||||||||||    
T  7766068 gaggaagaacaagtgtcttagtccatgacgaatacactttgtattctttcatcacccatattt 7766006  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 81 - 143
Target Start/End: Complemental strand, 7786890 - 7786828
Alignment:
Q  81 gaggaagaacaagtttattattccaagaggaacgcactttgtattctttcatcacccatattt 143  Q
    |||||||||||||  | |||||||||||  || |||| |||||||||||||||||||||||||    
T  7786890 gaggaagaacaagagtcttattccaagataaatgcacgttgtattctttcatcacccatattt 7786828  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 85 - 143
Target Start/End: Complemental strand, 7790502 - 7790444
Alignment:
Q  85 aagaacaagtttattattccaagaggaacgcactttgtattctttcatcacccatattt 143  Q
    |||||||||  | ||| ||||||| ||| ||||||||||||||||||||||||||||||    
T  7790502 aagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatattt 7790444  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 85 - 143
Target Start/End: Complemental strand, 7813899 - 7813841
Alignment:
Q  85 aagaacaagtttattattccaagaggaacgcactttgtattctttcatcacccatattt 143  Q
    |||||||||  | ||||||||||| ||| |||||||||||||||||| |||||||||||    
T  7813899 aagaacaagagttttattccaagacgaatgcactttgtattctttcaacacccatattt 7813841  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 85 - 143
Target Start/End: Complemental strand, 7878805 - 7878747
Alignment:
Q  85 aagaacaagtttattattccaagaggaacgcactttgtattctttcatcacccatattt 143  Q
    |||||||||  | ||| ||||||| ||| ||||||||||||||||||||||||||||||    
T  7878805 aagaacaagagttttaatccaagatgaatgcactttgtattctttcatcacccatattt 7878747  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 85 - 143
Target Start/End: Complemental strand, 48853103 - 48853045
Alignment:
Q  85 aagaacaagtttattattccaagaggaacgcactttgtattctttcatcacccatattt 143  Q
    |||||||||  | ||| ||||||| ||||||||||||||||||||||| ||||||||||    
T  48853103 aagaacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatattt 48853045  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 143
Target Start/End: Original strand, 7773481 - 7773522
Alignment:
Q  102 tccaagaggaacgcactttgtattctttcatcacccatattt 143  Q
    ||||||| ||| ||||||||||||||||||||||||||||||    
T  7773481 tccaagacgaatgcactttgtattctttcatcacccatattt 7773522  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 143
Target Start/End: Original strand, 45365876 - 45365917
Alignment:
Q  102 tccaagaggaacgcactttgtattctttcatcacccatattt 143  Q
    ||||||| ||||||||||| ||||||||||||||||||||||    
T  45365876 tccaagacgaacgcactttatattctttcatcacccatattt 45365917  T

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Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 143
Target Start/End: Original strand, 48147369 - 48147410
Alignment:
Q  102 tccaagaggaacgcactttgtattctttcatcacccatattt 143  Q
    ||||||| ||| ||||||||||||||||||||||||||||||    
T  48147369 tccaagacgaatgcactttgtattctttcatcacccatattt 48147410  T

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Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 50250322 - 50250386
Alignment:
Q  30 ttccaatgatatcataattttttgtagagtatacagggaaaatgtcactacgaggaagaacaagt 94  Q
    ||||||||||||||| ||||||||||| ||||| |||| ||| || || | ||||||||||||||    
T  50250322 ttccaatgatatcattattttttgtagtgtatatagggtaaaagtaaccaggaggaagaacaagt 50250386  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 143
Target Start/End: Complemental strand, 7801059 - 7801001
Alignment:
Q  85 aagaacaagtttattattccaagaggaacgcactttgtattctttcatcacccatattt 143  Q
    |||||||||  | ||||||||||| ||| |||||||||| ||||||| |||||||||||    
T  7801059 aagaacaagagttttattccaagacgaatgcactttgtaatctttcaacacccatattt 7801001  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 7771817 - 7771760
Alignment:
Q  85 aagaacaagtttattattccaagaggaacgcactttgtattctttcatcacccatatt 142  Q
    |||||||||  | ||| |||| || ||| |||||||||||||||||||||||||||||    
T  7771817 aagaacaagagttttagtccatgacgaatgcactttgtattctttcatcacccatatt 7771760  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 143
Target Start/End: Original strand, 45371710 - 45371771
Alignment:
Q  82 aggaagaacaagtttattattccaagaggaacgcactttgtattctttcatcacccatattt 143  Q
    |||||||||||   | ||| ||||||| ||| ||||||||||||||||||| ||||||||||    
T  45371710 aggaagaacaaaagtcttagtccaagacgaatgcactttgtattctttcataacccatattt 45371771  T

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Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 143
Target Start/End: Original strand, 45384548 - 45384589
Alignment:
Q  102 tccaagaggaacgcactttgtattctttcatcacccatattt 143  Q
    ||||||| ||| ||||||| ||||||||||||||||||||||    
T  45384548 tccaagacgaatgcactttatattctttcatcacccatattt 45384589  T

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Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 143
Target Start/End: Original strand, 48156085 - 48156126
Alignment:
Q  102 tccaagaggaacgcactttgtattctttcatcacccatattt 143  Q
    ||||||| ||| ||||||||||||| ||||||||||||||||    
T  48156085 tccaagaagaatgcactttgtattcgttcatcacccatattt 48156126  T

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Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 143
Target Start/End: Complemental strand, 48903348 - 48903319
Alignment:
Q  114 gcactttgtattctttcatcacccatattt 143  Q
    ||||||||||||||||||||||||||||||    
T  48903348 gcactttgtattctttcatcacccatattt 48903319  T

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Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 143
Target Start/End: Original strand, 49038534 - 49038575
Alignment:
Q  102 tccaagaggaacgcactttgtattctttcatcacccatattt 143  Q
    ||||||| ||| | ||||||||||||||||||||||||||||    
T  49038534 tccaagacgaatgaactttgtattctttcatcacccatattt 49038575  T

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Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 143
Target Start/End: Original strand, 49043836 - 49043865
Alignment:
Q  114 gcactttgtattctttcatcacccatattt 143  Q
    ||||||||||||||||||||||||||||||    
T  49043836 gcactttgtattctttcatcacccatattt 49043865  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 143
Target Start/End: Original strand, 11005584 - 11005625
Alignment:
Q  102 tccaagaggaacgcactttgtattctttcatcacccatattt 143  Q
    ||||||| ||| ||||||||||||||||||| ||||||||||    
T  11005584 tccaagacgaatgcactttgtattctttcataacccatattt 11005625  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 143
Target Start/End: Original strand, 11024159 - 11024200
Alignment:
Q  102 tccaagaggaacgcactttgtattctttcatcacccatattt 143  Q
    ||||||| ||| ||||||||||||||||||| ||||||||||    
T  11024159 tccaagacgaatgcactttgtattctttcataacccatattt 11024200  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 143
Target Start/End: Original strand, 11015148 - 11015188
Alignment:
Q  103 ccaagaggaacgcactttgtattctttcatcacccatattt 143  Q
    |||||| ||| ||||||||||||||||||| ||||||||||    
T  11015148 ccaagacgaatgcactttgtattctttcataacccatattt 11015188  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 143
Target Start/End: Complemental strand, 15349275 - 15349247
Alignment:
Q  115 cactttgtattctttcatcacccatattt 143  Q
    |||||||||||||||||||||||||||||    
T  15349275 cactttgtattctttcatcacccatattt 15349247  T

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