View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2465_low_3 (Length: 521)
Name: NF2465_low_3
Description: NF2465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2465_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 30 - 409
Target Start/End: Original strand, 49931892 - 49932271
Alignment:
| Q |
30 |
ttactaccagacatgagtgtgaccagaaaaaagtaaacagaacatcacatgtttacatacttagtcccacatcggaaagagtagaaagtaaaatgaggga |
129 |
Q |
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| T |
49931892 |
ttactaccagacatgagtgtgaccagaaaaaagtaaacagaacatcacatgtttacatacttagtcccacatcggaaagagtagaaagtaaaatgaggga |
49931991 |
T |
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| Q |
130 |
agatagttataaattaaggaaagatgatagaagaatgtttaacctgtcctgtca-ggggtgaaaggcaactcgccaatgaccgttaagagacggtgggtt |
228 |
Q |
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| T |
49931992 |
agatagttataaataaaggaaagatgatagaggaatgctcaacctgtcctgtcagggggtgaaaggcaactcgccaatgaccgttaagagacggtgggtt |
49932091 |
T |
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| Q |
229 |
gcgccaacacctattgttttgaacacacctgctgcacgagtaactgtttgttccttactttggtttcggatgacatttcgtcaatttttggaagccgaaa |
328 |
Q |
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| T |
49932092 |
gcgccaacacctattatttcgaacacacctgccgcgcgagtaacagttcattccttactttggtttcggacggcatctcgtcaatttttggaagccgaaa |
49932191 |
T |
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| Q |
329 |
ggctctcgcttattcaatcaattcttgaaaagattcactcaatcttcatatttaaggatctatattactctatttttattt |
409 |
Q |
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| T |
49932192 |
ggctctcg-ttattcaatcaattcttgaaaagattcgctcaatctttaaatttaaggatctatattactctatttttattt |
49932271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 49922248 - 49922297
Alignment:
| Q |
168 |
ttaacctgtcctgtcagggg-tgaaaggcaactcgccaatgaccgttaag |
216 |
Q |
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| T |
49922248 |
ttaacctgtcctgtcagggggtgaaaggcaactggtcaatgatcgttaag |
49922297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 468 - 509
Target Start/End: Complemental strand, 27345878 - 27345837
Alignment:
| Q |
468 |
attagtcatttccacactcaatccgatctcatgtttcctctc |
509 |
Q |
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| T |
27345878 |
attagtcattgccacactcaatctgatctcatgtctcctctc |
27345837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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