View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2465_low_30 (Length: 209)
Name: NF2465_low_30
Description: NF2465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2465_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 2987151 - 2987271
Alignment:
| Q |
1 |
aaaaatgaaccaagagaagaggatttcagttagattcacgacaacagaggatttcatagacgaaggatgaatggtgttgtcgctgccatccattcaagga |
100 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
2987151 |
aaaaatgaaccaagaggagaggatttcagttagattcacgacgacagaggatttcgtagacgaaggatgaaaggtgttgtcgctgccatcctttcaagga |
2987250 |
T |
|
| Q |
101 |
atgtaagaggcttatcactct |
121 |
Q |
| |
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||||||||||||||||||||| |
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| T |
2987251 |
atgtaagaggcttatcactct |
2987271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 45117226 - 45117106
Alignment:
| Q |
1 |
aaaaatgaaccaagagaagaggatttcagttagattcacgacaacagaggatttcatagacgaaggatgaatggtgttgtcgctgccatccattcaagga |
100 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
45117226 |
aaaaatgaaccaagaggagaggatttcagttagattcacgacgacagaggatttcatagacgaaggatgaaaggtgttgtcgctgccatcctttcaagga |
45117127 |
T |
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| Q |
101 |
atgtaagaggcttatcactct |
121 |
Q |
| |
|
|||||||||||| |||||||| |
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| T |
45117126 |
atgtaagaggctcatcactct |
45117106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 7e-48; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 26721683 - 26721803
Alignment:
| Q |
1 |
aaaaatgaaccaagagaagaggatttcagttagattcacgacaacagaggatttcatagacgaaggatgaatggtgttgtcgctgccatccattcaagga |
100 |
Q |
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|
||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
26721683 |
aaaaatgaaccaaaaggagaggatttcagttagattcacgacgacagaggatttcatagacgaaggatgaatggtgttgtcgctgctatcctttcaagga |
26721782 |
T |
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| Q |
101 |
atgtaagaggcttatcactct |
121 |
Q |
| |
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|||| |||||||||||||||| |
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|
| T |
26721783 |
atgttagaggcttatcactct |
26721803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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