View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2466-Insertion-10 (Length: 485)

Name: NF2466-Insertion-10
Description: NF2466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2466-Insertion-10
NF2466-Insertion-10
[»] chr1 (4 HSPs)
chr1 (8-485)||(8008346-8008812)
chr1 (10-60)||(32347987-32348036)
chr1 (10-77)||(35483958-35484026)
chr1 (10-60)||(35531474-35531523)
[»] chr2 (10 HSPs)
chr2 (8-65)||(28301682-28301738)
chr2 (10-60)||(14541340-14541389)
chr2 (10-61)||(15677476-15677526)
chr2 (10-60)||(479158-479207)
chr2 (10-60)||(10812208-10812257)
chr2 (10-60)||(11560232-11560281)
chr2 (10-77)||(36405027-36405095)
chr2 (8-65)||(13753959-13754015)
chr2 (8-60)||(14295940-14295991)
chr2 (16-60)||(25558374-25558417)
[»] chr7 (4 HSPs)
chr7 (16-60)||(35112438-35112481)
chr7 (10-60)||(33257890-33257939)
chr7 (16-60)||(12838269-12838312)
chr7 (10-60)||(17896708-17896757)
[»] chr8 (5 HSPs)
chr8 (10-60)||(167659-167708)
chr8 (10-60)||(13327788-13327837)
chr8 (16-60)||(11993902-11993945)
chr8 (18-60)||(38128730-38128771)
chr8 (8-60)||(16701073-16701124)
[»] chr3 (3 HSPs)
chr3 (10-60)||(48151994-48152043)
chr3 (10-60)||(48214076-48214125)
chr3 (8-60)||(46973432-46973483)
[»] chr4 (6 HSPs)
chr4 (10-77)||(8735383-8735450)
chr4 (10-61)||(53599969-53600019)
chr4 (10-60)||(3436250-3436299)
chr4 (10-60)||(56576286-56576335)
chr4 (10-59)||(26620534-26620582)
chr4 (17-65)||(38542466-38542513)
[»] chr6 (3 HSPs)
chr6 (17-60)||(30236987-30237029)
chr6 (10-60)||(3849074-3849123)
chr6 (10-60)||(31854674-31854723)
[»] chr5 (3 HSPs)
chr5 (10-61)||(12784621-12784671)
chr5 (10-65)||(28024438-28024492)
chr5 (16-60)||(4098322-4098365)
[»] scaffold1254 (1 HSPs)
scaffold1254 (8-65)||(1037-1093)
[»] scaffold0419 (1 HSPs)
scaffold0419 (8-65)||(6536-6592)


Alignment Details
Target: chr1 (Bit Score: 397; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 8 - 485
Target Start/End: Original strand, 8008346 - 8008812
Alignment:
Q  8 gtattgatctttgaaagtgacaagttaaattgaaacaaaatttttctccaaaaaagacttaaaaatgaacctaactttacagagatagaatttgacctaa 107  Q
    |||||||||||| ||||||||| |||||||||| ||||| ||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||| |||    
T  8008346 gtattgatctttaaaagtgaca-gttaaattgagacaaattttttctccaaaagagacttaaaaaggaacctaactttacagagataaaatttgacttaa 8008444  T
Q  108 ctttaagtgatggaatataacctatctgtcttcgtgcatgacactccactaattaatatatcatgtcttcttcacttagttattcttggtgtgaatacta 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8008445 ctttaagtgatggaatataacctatctgtcttcgtgcatgacactccactaattaatatatcatgtcttcttcacttagttattcttggtgtgaatacta 8008544  T
Q  208 tgttgttgctggtgactgcatggatttgaagggaacacatatcccattatatatgyttgctgaaggaaatatttgagaatcataacaccaaagccttaaa 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  8008545 tgttgttgctggtgactgcatggatttgaagggaacacatatcccattatatatgtttgctgaaggaaatatttgagaatcataacaccaaagccttaaa 8008644  T
Q  308 attggcaagtgtagttggaagggaggctgagagaaatgaccaccaaacttattgcataaatgtgttgatccggtgtttctagagcccctatggaacctta 407  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8008645 attggaaagtgtagttggaagtgaggctgagagaaatgaccaccaaacttattgcataaatgtgttgatccggtgtttctagagcccctatggaacctta 8008744  T
Q  408 gtacacttaatgggttgtcttgggttgctacgacgctagcatttctatatcactatttggctaattaagactactata 485  Q
    ||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8008745 gtacacttaa----------tgggttgctacgacgctagcatttctatatcactatttggctaattaagactactata 8008812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 32348036 - 32347987
Alignment:
Q  10 attgatctttgaaagtgacaagttaaattgaaacaaaatttttctccaaaa 60  Q
    ||||| ||||||||||| || ||||||||||||||||||||||||||||||    
T  32348036 attgaactttgaaagtggca-gttaaattgaaacaaaatttttctccaaaa 32347987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 35483958 - 35484026
Alignment:
Q  10 attgatctttgaaagtgacaagttaaattgaaacaaaatttttctccaaaaa--agacttaaaaatgaac 77  Q
    ||||| |||||||||||||| ||||||| | ||||||| |||||||||||||  | ||||||||||||||    
T  35483958 attgaactttgaaagtgaca-gttaaataggaacaaaaattttctccaaaaatgacacttaaaaatgaac 35484026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 60
Target Start/End: Original strand, 35531474 - 35531523
Alignment:
Q  10 attgatctttgaaagtgacaagttaaattgaaacaaaatttttctccaaaa 60  Q
    ||||| |||||||||||||| ||||||| | ||||||||||||||||||||    
T  35531474 attgaactttgaaagtgaca-gttaaataggaacaaaatttttctccaaaa 35531523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 28301682 - 28301738
Alignment:
Q  8 gtattgatctttgaaagtgacaagttaaattgaaacaaaatttttctccaaaaaagac 65  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||| ||||| ||||    
T  28301682 gtattgatctttgaaagtgacat-ttaaattgaaacaaaatttttcttcaaaagagac 28301738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 14541389 - 14541340
Alignment:
Q  10 attgatctttgaaagtgacaagttaaattgaaacaaaatttttctccaaaa 60  Q
    ||||| |||||||||||||| ||||||||||||||| ||||||||||||||    
T  14541389 attgaactttgaaagtgaca-gttaaattgaaacaatatttttctccaaaa 14541340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 61
Target Start/End: Original strand, 15677476 - 15677526
Alignment:
Q  10 attgatctttgaaagtgacaagttaaattgaaacaaaatttttctccaaaaa 61  Q
    ||||| |||||||||||||| ||||||| | |||||||||||||||||||||    
T  15677476 attgaactttgaaagtgaca-gttaaataggaacaaaatttttctccaaaaa 15677526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 60
Target Start/End: Original strand, 479158 - 479207
Alignment:
Q  10 attgatctttgaaagtgacaagttaaattgaaacaaaatttttctccaaaa 60  Q
    ||||| |||||||||||||| ||||||| | ||||||||||||||||||||    
T  479158 attgaactttgaaagtgaca-gttaaataggaacaaaatttttctccaaaa 479207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 10812257 - 10812208
Alignment:
Q  10 attgatctttgaaagtgacaagttaaattgaaacaaaatttttctccaaaa 60  Q
    ||||| |||||||||||||| ||||||| | ||||||||||||||||||||    
T  10812257 attgaactttgaaagtgaca-gttaaataggaacaaaatttttctccaaaa 10812208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 60
Target Start/End: Original strand, 11560232 - 11560281
Alignment:
Q  10 attgatctttgaaagtgacaagttaaattgaaacaaaatttttctccaaaa 60  Q
    ||||| |||||||||||||| ||||||| ||||||||| ||||||||||||    
T  11560232 attgaactttgaaagtgaca-gttaaatagaaacaaaaattttctccaaaa 11560281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 36405027 - 36405095
Alignment:
Q  10 attgatctttgaaagtgacaagttaaattgaaacaaaatttttctccaaaaaag--acttaaaaatgaac 77  Q
    ||||| ||||||||||||| |||||||| ||||||||| |||||| ||||| ||  ||||||||||||||    
T  36405027 attgaactttgaaagtgac-agttaaatagaaacaaaaattttcttcaaaagagacacttaaaaatgaac 36405095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 13754015 - 13753959
Alignment:
Q  8 gtattgatctttgaaagtgacaagttaaattgaaacaaaatttttctccaaaaaagac 65  Q
    ||||||| ||||||||||||| |||||||||| ||||||| | |||||||||| ||||    
T  13754015 gtattgaactttgaaagtgac-agttaaattggaacaaaaatgttctccaaaagagac 13753959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 14295940 - 14295991
Alignment:
Q  8 gtattgatctttgaaagtgacaagttaaattgaaacaaaatttttctccaaaa 60  Q
    ||||||| |||||||||||||| ||||||| | ||||||| ||||||||||||    
T  14295940 gtattgaactttgaaagtgaca-gttaaataggaacaaaaattttctccaaaa 14295991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 25558374 - 25558417
Alignment:
Q  16 ctttgaaagtgacaagttaaattgaaacaaaatttttctccaaaa 60  Q
    |||||||||||||| ||||||| ||||||||| ||||||||||||    
T  25558374 ctttgaaagtgaca-gttaaatagaaacaaaaattttctccaaaa 25558417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 35112481 - 35112438
Alignment:
Q  16 ctttgaaagtgacaagttaaattgaaacaaaatttttctccaaaa 60  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  35112481 ctttgaaagtgaca-gttaaattgaaacaaaatttttctccaaaa 35112438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 33257939 - 33257890
Alignment:
Q  10 attgatctttgaaagtgacaagttaaattgaaacaaaatttttctccaaaa 60  Q
    ||||| |||||||||||| | ||||||||||||||||||||||||||||||    
T  33257939 attgaactttgaaagtgata-gttaaattgaaacaaaatttttctccaaaa 33257890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 12838269 - 12838312
Alignment:
Q  16 ctttgaaagtgacaagttaaattgaaacaaaatttttctccaaaa 60  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||    
T  12838269 ctttgaaagtgaca-gttaaatagaaacaaaatttttctccaaaa 12838312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 60
Target Start/End: Original strand, 17896708 - 17896757
Alignment:
Q  10 attgatctttgaaagtgacaagttaaattgaaacaaaatttttctccaaaa 60  Q
    ||||| |||||||||||||| ||||||| | ||||||||||||||||||||    
T  17896708 attgaactttgaaagtgaca-gttaaataggaacaaaatttttctccaaaa 17896757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 60
Target Start/End: Original strand, 167659 - 167708
Alignment:
Q  10 attgatctttgaaagtgacaagttaaattgaaacaaaatttttctccaaaa 60  Q
    ||||| |||||||||||||| |||||||| |||||||||||||||||||||    
T  167659 attgaactttgaaagtgaca-gttaaattaaaacaaaatttttctccaaaa 167708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 13327837 - 13327788
Alignment:
Q  10 attgatctttgaaagtgacaagttaaattgaaacaaaatttttctccaaaa 60  Q
    ||||| |||||||||||||| ||||||| ||||||||||||||||||||||    
T  13327837 attgaactttgaaagtgaca-gttaaatagaaacaaaatttttctccaaaa 13327788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 11993945 - 11993902
Alignment:
Q  16 ctttgaaagtgacaagttaaattgaaacaaaatttttctccaaaa 60  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||    
T  11993945 ctttgaaagtgaca-gttaaatagaaacaaaatttttctccaaaa 11993902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 38128730 - 38128771
Alignment:
Q  18 ttgaaagtgacaagttaaattgaaacaaaatttttctccaaaa 60  Q
    |||||||||||| ||||||| ||||||||||||||||||||||    
T  38128730 ttgaaagtgaca-gttaaatagaaacaaaatttttctccaaaa 38128771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 16701073 - 16701124
Alignment:
Q  8 gtattgatctttgaaagtgacaagttaaattgaaacaaaatttttctccaaaa 60  Q
    ||||||| |||| ||||||||| ||||||| | ||||||||||||||||||||    
T  16701073 gtattgaactttaaaagtgaca-gttaaataggaacaaaatttttctccaaaa 16701124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 48152043 - 48151994
Alignment:
Q  10 attgatctttgaaagtgacaagttaaattgaaacaaaatttttctccaaaa 60  Q
    ||||| |||||||||||||| |||||||||||||||| |||||||||||||    
T  48152043 attgaactttgaaagtgaca-gttaaattgaaacaaattttttctccaaaa 48151994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 48214125 - 48214076
Alignment:
Q  10 attgatctttgaaagtgacaagttaaattgaaacaaaatttttctccaaaa 60  Q
    ||||| |||||||||||||| |||||||||||||||| |||||||||||||    
T  48214125 attgaactttgaaagtgaca-gttaaattgaaacaaattttttctccaaaa 48214076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 46973483 - 46973432
Alignment:
Q  8 gtattgatctttgaaagtgacaagttaaattgaaacaaaatttttctccaaaa 60  Q
    ||||||| |||||||||||||| |||||||   ||||||||||||||||||||    
T  46973483 gtattgaactttgaaagtgaca-gttaaataagaacaaaatttttctccaaaa 46973432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 8735450 - 8735383
Alignment:
Q  10 attgatctttgaaagtgacaagttaaattgaaacaaaatttttctccaaaa-aagacttaaaaatgaac 77  Q
    ||||| ||||||||||||||| |||||| ||||||||||||||||| ||||  | ||||||||||||||    
T  8735450 attgaactttgaaagtgacaa-ttaaatagaaacaaaatttttctctaaaatgacacttaaaaatgaac 8735383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 61
Target Start/End: Original strand, 53599969 - 53600019
Alignment:
Q  10 attgatctttgaaagtgacaagttaaattgaaacaaaatttttctccaaaaa 61  Q
    ||||| |||||||||||||| ||||||| | |||||||||||||||||||||    
T  53599969 attgaactttgaaagtgaca-gttaaataggaacaaaatttttctccaaaaa 53600019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 60
Target Start/End: Original strand, 3436250 - 3436299
Alignment:
Q  10 attgatctttgaaagtgacaagttaaattgaaacaaaatttttctccaaaa 60  Q
    ||||| |||||||||||||| ||||||| | ||||||||||||||||||||    
T  3436250 attgaactttgaaagtgaca-gttaaataggaacaaaatttttctccaaaa 3436299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 60
Target Start/End: Original strand, 56576286 - 56576335
Alignment:
Q  10 attgatctttgaaagtgacaagttaaattgaaacaaaatttttctccaaaa 60  Q
    ||||| |||||||||||||| ||||||| | ||||||||||||||||||||    
T  56576286 attgaactttgaaagtgaca-gttaaataggaacaaaatttttctccaaaa 56576335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 26620534 - 26620582
Alignment:
Q  10 attgatctttgaaagtgacaagttaaattgaaacaaaatttttctccaaa 59  Q
    ||||| |||||||||||||| ||||||| | |||||||||||||||||||    
T  26620534 attgaactttgaaagtgaca-gttaaataggaacaaaatttttctccaaa 26620582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 38542466 - 38542513
Alignment:
Q  17 tttgaaagtgacaagttaaattgaaacaaaatttttctccaaaaaagac 65  Q
    |||||||||||||  |||||| | |||||||||||||||||||||||||    
T  38542466 tttgaaagtgacat-ttaaataggaacaaaatttttctccaaaaaagac 38542513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 30237029 - 30236987
Alignment:
Q  17 tttgaaagtgacaagttaaattgaaacaaaatttttctccaaaa 60  Q
    ||||||||||||| |||||||||||||||| |||||||||||||    
T  30237029 tttgaaagtgaca-gttaaattgaaacaaattttttctccaaaa 30236987  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 3849123 - 3849074
Alignment:
Q  10 attgatctttgaaagtgacaagttaaattgaaacaaaatttttctccaaaa 60  Q
    ||||| |||||||||||||| ||||||| | ||||||||||||||||||||    
T  3849123 attgaactttgaaagtgaca-gttaaataggaacaaaatttttctccaaaa 3849074  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 60
Target Start/End: Original strand, 31854674 - 31854723
Alignment:
Q  10 attgatctttgaaagtgacaagttaaattgaaacaaaatttttctccaaaa 60  Q
    ||||| ||||||||||||||| ||||||  |||||||||||||||||||||    
T  31854674 attgaactttgaaagtgacaa-ttaaataaaaacaaaatttttctccaaaa 31854723  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 61
Target Start/End: Original strand, 12784621 - 12784671
Alignment:
Q  10 attgatctttgaaagtgacaagttaaattgaaacaaaatttttctccaaaaa 61  Q
    ||||| |||||||||||||| ||||||| | |||||||||||||||||||||    
T  12784621 attgaactttgaaagtgaca-gttaaataggaacaaaatttttctccaaaaa 12784671  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 65
Target Start/End: Original strand, 28024438 - 28024492
Alignment:
Q  10 attgatctttgaaagtgacaagttaaattgaaacaaaatttttctccaaaaaagac 65  Q
    ||||| |||||||||||||| ||||||| | |||||||||||||||||||| ||||    
T  28024438 attgaactttgaaagtgaca-gttaaataggaacaaaatttttctccaaaagagac 28024492  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 4098365 - 4098322
Alignment:
Q  16 ctttgaaagtgacaagttaaattgaaacaaaatttttctccaaaa 60  Q
    |||| ||||||||| ||||||||||||||||| ||||||||||||    
T  4098365 ctttaaaagtgaca-gttaaattgaaacaaaaattttctccaaaa 4098322  T

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Target: scaffold1254 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 1093 - 1037
Alignment:
Q  8 gtattgatctttgaaagtgacaagttaaattgaaacaaaatttttctccaaaaaagac 65  Q
    ||||||| |||||||| ||||| ||||||||||||||||||| ||||  |||||||||    
T  1093 gtattgaactttgaaaatgaca-gttaaattgaaacaaaattattctttaaaaaagac 1037  T

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Target: scaffold0419 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 6536 - 6592
Alignment:
Q  8 gtattgatctttgaaagtgacaagttaaattgaaacaaaatttttctccaaaaaagac 65  Q
    ||||||| |||||||| ||||| ||||||||||||||||||| ||||  |||||||||    
T  6536 gtattgaactttgaaaatgaca-gttaaattgaaacaaaattattctttaaaaaagac 6592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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