View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2466-Insertion-11 (Length: 404)
Name: NF2466-Insertion-11
Description: NF2466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2466-Insertion-11 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 8 - 404
Target Start/End: Complemental strand, 2516460 - 2516064
Alignment:
| Q |
8 |
catataaccatcataactcacttgcattggttagtggttaggtggtcttaacttggaatcttggagtgtactcctctcgaaatctctagttcgattctct |
107 |
Q |
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| T |
2516460 |
catataaccatcataactcacttgcattggttagtggttaggtggtcttaacttggaaccttggagtgtactcctcttgaaatctctagtttgattctct |
2516361 |
T |
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| Q |
108 |
caggtgtcaattttggtggattaatttgatttcttcaaaaaacatcattacttgtactaatatggtgtaatcaaattccaccgcctctaatcgaaatctc |
207 |
Q |
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| T |
2516360 |
gaggtgtcaattttggtggattagtttgatttcttcaaaaaatatcattacttgtactaatatggtgtaatcaaattccaccgcctctaatcgaaatctc |
2516261 |
T |
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| Q |
208 |
attcgattctctctgatgtcaatttcggaagattgtttctcatgatatgaggaatgcattctggtggtaatctgtaggattgtccttcaaattgatagat |
307 |
Q |
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| T |
2516260 |
attcgattttctctgatgtcaattttggaagattgtttctcatgatatgaggaatgcattctggtggtaatctgtaggattgtccttcaaattgatagat |
2516161 |
T |
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| Q |
308 |
ttgtcacttaatcagtccaaacttaactagttacaagattcgtaggtaattcttggcgaagaattggaccaacatttcaaggcatgcttagatcttg |
404 |
Q |
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| T |
2516160 |
ttgtcacttaatcagtccaaacttaactagttacaagattcgtaggtaattcttggcgaggaattggaccaacatttcaaggcatgcttagatcttg |
2516064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 89 - 149
Target Start/End: Original strand, 45559252 - 45559312
Alignment:
| Q |
89 |
atctctagttcgattctctcaggtgtcaattttggtggattaatttgatttcttcaaaaaa |
149 |
Q |
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| T |
45559252 |
atctcaagttcgattctccccggtgccaattttggtgggttaatttgacttcttcaaaaaa |
45559312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 126
Target Start/End: Original strand, 42814890 - 42814958
Alignment:
| Q |
58 |
acttggaatcttggagtgtactcctctcgaaatctctagttcgattctctcaggtgtcaattttggtgg |
126 |
Q |
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| T |
42814890 |
acttgggatcttggagtttgctcctcttgaagtctcaggttcgattccctctggtgtcaatttcggtgg |
42814958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 70 - 134
Target Start/End: Original strand, 13015468 - 13015533
Alignment:
| Q |
70 |
ggagtgtactcctc-tcgaaatctctagttcgattctctcaggtgtcaattttggtggattaattt |
134 |
Q |
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| T |
13015468 |
ggagtgtgctcctcctcgaagtctcatgttcgattctctcaggtgtcaatttaggtgggttaattt |
13015533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 149
Target Start/End: Original strand, 18525428 - 18525481
Alignment:
| Q |
96 |
gttcgattctctcaggtgtcaattttggtggattaatttgatttcttcaaaaaa |
149 |
Q |
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| T |
18525428 |
gttcgattctctccggtgtcaatttagatggactaatttaacttcttcaaaaaa |
18525481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 135
Target Start/End: Complemental strand, 17706482 - 17706405
Alignment:
| Q |
58 |
acttggaatcttggagtgtactcctctcgaaatctctagttcgattctctcaggtgtcaattttggtggattaatttg |
135 |
Q |
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| T |
17706482 |
acttgggatcttggagtttgctcctccagaagtctcaagttcgattccttctggtgtcaatttcggtggactaatttg |
17706405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 149
Target Start/End: Original strand, 6650663 - 6650716
Alignment:
| Q |
96 |
gttcgattctctcaggtgtcaattttggtggattaatttgatttcttcaaaaaa |
149 |
Q |
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| T |
6650663 |
gttcgattctctctggtgtcaatttaggtggattagtttagcttcttcaaaaaa |
6650716 |
T |
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