View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2466-Insertion-12 (Length: 364)
Name: NF2466-Insertion-12
Description: NF2466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2466-Insertion-12 |
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| [»] chr8 (8 HSPs) |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 8 - 364
Target Start/End: Complemental strand, 38120897 - 38120538
Alignment:
| Q |
8 |
ctgctgatgtcactactgcagcaggtgtgtctcccatgcctcaggtcaagccaatggttgagattgaagatcaccatggcctgtgagtgcgatgcttcga |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38120897 |
ctgctgatgtcactactgcagcaggtgtgtctcccatgcctcaggtcaagccaatggttgagattgaagatcaccatggcctgtgagtgcgatgcttcga |
38120798 |
T |
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| Q |
108 |
tgatgatga---agattgtggttcagttctttctctgctgaagtgaatctctatgaaatttgtagttaataagtttacgctgttgtccatctaatgtagc |
204 |
Q |
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||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
38120797 |
tgatgatgatgaagattgcggtttagttctttctctgctgaagtgaatctctatgaaatttgtagttaataagtttacactgttgtccatctaatgtagc |
38120698 |
T |
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| Q |
205 |
taattcacacggttgcttagttctttttagtttgtgctgcacttctttgtctcatgaagtgaaactttgaatttgtagttaattcacactattatccaac |
304 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38120697 |
taattcacacggttccttagttctttttagtttgtgctgcacttctttgtctcatgaagtgaaactttgaatttgtagttaattcacactattatccaac |
38120598 |
T |
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| Q |
305 |
tacactatgttgcttaaatagttcttcaataaaacaatttgtggatttagtctttacaga |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38120597 |
tacactatgttgcttaaatagttcttcaataaaacaatttgtggatttagtctttacaga |
38120538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 8 - 182
Target Start/End: Original strand, 38609226 - 38609400
Alignment:
| Q |
8 |
ctgctgatgtcactactgcagcaggtgtgtctcccatgcctcaggtcaagccaatggttgagattgaagatcaccatggcctgtgagtgcgatgcttcga |
107 |
Q |
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| T |
38609226 |
ctgctggtgtcactactacagcaggtgtgtctcccatgcctcaggtcaagccaatggttgagattgaagatcaccatggcctgtgagtgcgatgcttcga |
38609325 |
T |
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| Q |
108 |
tgatgatgaagattgtggttcagttctttctctgctgaagtgaatctctatgaaatttgtagttaataagtttac |
182 |
Q |
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||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38609326 |
tgatgatgaagattgcggtttagttctttctctgctgaagtgaatctctatgaaatttgtagttaataagtttac |
38609400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 8 - 182
Target Start/End: Original strand, 38794009 - 38794183
Alignment:
| Q |
8 |
ctgctgatgtcactactgcagcaggtgtgtctcccatgcctcaggtcaagccaatggttgagattgaagatcaccatggcctgtgagtgcgatgcttcga |
107 |
Q |
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|||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38794009 |
ctgctggtgtcactactacagcaggtgtgtctcccatgcctcaggtcaagccaatggttgagattgaagatcaccatggcctgtgagtgcgatgcttcga |
38794108 |
T |
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| Q |
108 |
tgatgatgaagattgtggttcagttctttctctgctgaagtgaatctctatgaaatttgtagttaataagtttac |
182 |
Q |
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||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38794109 |
tgatgatgaagattgcggtttagttctttctctgctgaagtgaatctctatgaaatttgtagttaataagtttac |
38794183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 28 - 138
Target Start/End: Original strand, 34592844 - 34592957
Alignment:
| Q |
28 |
gcaggtgtgtctcccatgcctcaggtcaagccaatggttgagattgaagatcaccatggcctgtgagtgcgatgcttc---gatgatgatgaagattgtg |
124 |
Q |
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||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| | |
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| T |
34592844 |
gcaggtgtgtctcccgtgcctcgggtcaggccaatggttgagattgaagatcaccatggcctgtgagtgtgatgcttcaatgatgatgatgaagattgcg |
34592943 |
T |
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| Q |
125 |
gttcagttctttct |
138 |
Q |
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||| | |||||||| |
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| T |
34592944 |
gtttacttctttct |
34592957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 291
Target Start/End: Original strand, 34593022 - 34593078
Alignment:
| Q |
235 |
tttgtgctgcacttctttgtctcatgaagtgaaactttgaatttgtagttaattcac |
291 |
Q |
| |
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|||||||||||||||||| ||| |||||| |||||||||||||||||||||||||| |
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| T |
34593022 |
tttgtgctgcacttctttatctgttgaagtcaaactttgaatttgtagttaattcac |
34593078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 292
Target Start/End: Original strand, 38609476 - 38609533
Alignment:
| Q |
235 |
tttgtgctgcacttctttgtctcatgaagtgaaactttgaatttgtagttaattcaca |
292 |
Q |
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|||||||||| ||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
38609476 |
tttgtgctgcgcttctttctccattgaagtgaaactttgaatttgtagttaattcaca |
38609533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 292
Target Start/End: Original strand, 38794259 - 38794316
Alignment:
| Q |
235 |
tttgtgctgcacttctttgtctcatgaagtgaaactttgaatttgtagttaattcaca |
292 |
Q |
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|||||||||| ||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
38794259 |
tttgtgctgcgcttctttctccgttgaagtgaaactttgaatttgtagttaattcaca |
38794316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 172
Target Start/End: Original strand, 38287457 - 38287498
Alignment:
| Q |
131 |
ttctttctctgctgaagtgaatctctatgaaatttgtagtta |
172 |
Q |
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|||||| |||||||||||||| |||||||||| ||||||||| |
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| T |
38287457 |
ttctttttctgctgaagtgaaactctatgaaacttgtagtta |
38287498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 8 - 364
Target Start/End: Complemental strand, 28730471 - 28730120
Alignment:
| Q |
8 |
ctgctgatgtcactactgcagcaggtgtgtctcccatgcctcaggtcaagccaatggttgagattgaagatcaccatggcctgtgagtgcgatgcttcga |
107 |
Q |
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|||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||| || || |
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| T |
28730471 |
ctgctgatgtcactgctgcaacaggtgtgtctcccatgcctcaggtcaggccaatgtttgagattgaagatcaccatggcctgtgagtgtgatggtttga |
28730372 |
T |
|
| Q |
108 |
tgatgatgaagattgtggttcagttctttctctgctgaagtgaatctctatgaaatttgtagttaataagtttacgctgttgtccatctaatgtagctaa |
207 |
Q |
| |
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| |||| |||||||| | || | |||||||||||||||||| || || ||||||||||||||||||||||||||| | ||||| |||||||||||||||| |
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| T |
28730371 |
tcatgacgaagattgcgatttacttctttctctgctgaagtaaaactatatgaaatttgtagttaataagtttacaccgttgttcatctaatgtagctaa |
28730272 |
T |
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| Q |
208 |
ttcacacggttgcttagttctttttagtttgtgctgcacttctttgtctcatgaagtgaaactttgaatttgtagttaattcacactattatcc--aact |
305 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | | |
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| T |
28730271 |
ttcacaccgttgcttagttctttttagtttgtgctgcacttctttgtctcatgaagtgaaactctgaatttgtagttaattcacactattatccatatat |
28730172 |
T |
|
| Q |
306 |
acactatgttgcttaaatagttcttcaataaaacaatttgtggatttagtctttacaga |
364 |
Q |
| |
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|| ||||||||||||| |||||| | ||||| ||||||||||||||||||||| |
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| T |
28730171 |
actctatgttgcttaactagttcgttaataa-------tgtggatttagtctttacaga |
28730120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 70 - 141
Target Start/End: Original strand, 33078483 - 33078557
Alignment:
| Q |
70 |
attgaagatcaccatggcctgtgagtgcgatgcttc---gatgatgatgaagattgtggttcagttctttctctg |
141 |
Q |
| |
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||||||||||||||||| |||||| ||||||||||| ||||||||||||||| | |||| | ||||||||||| |
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| T |
33078483 |
attgaagatcaccatgggctgtgactgcgatgcttcaatgatgatgatgaagatcgcggtttacttctttctctg |
33078557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 190
Target Start/End: Original strand, 33078556 - 33078588
Alignment:
| Q |
158 |
tgaaatttgtagttaataagtttacgctgttgt |
190 |
Q |
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||||||||||||||||||||||||| ||||||| |
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| T |
33078556 |
tgaaatttgtagttaataagtttacactgttgt |
33078588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 253
Target Start/End: Complemental strand, 3928143 - 3928106
Alignment:
| Q |
216 |
gttgcttagttctttttagtttgtgctgcacttctttg |
253 |
Q |
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||||||||| |||||||||||||||| ||||||||||| |
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| T |
3928143 |
gttgcttagatctttttagtttgtgcagcacttctttg |
3928106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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