View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2466-Insertion-15 (Length: 137)
Name: NF2466-Insertion-15
Description: NF2466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2466-Insertion-15 |
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Alignment Details
Target: chr4 (Bit Score: 101; Significance: 2e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 2e-50
Query Start/End: Original strand, 7 - 131
Target Start/End: Complemental strand, 6902203 - 6902079
Alignment:
| Q |
7 |
aaacttatcattgcccaatgcgcctttttagcagtcatttaagtttgaagacaactcctagtccaacaattcctaaacctgcttataggattctaatctt |
106 |
Q |
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| T |
6902203 |
aaacttatcattgctcaatccgcctttttaacagtcatttaagtttgaagacaactcctagtacaccaattcctaaacctgcgtataggattctaatctt |
6902104 |
T |
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| Q |
107 |
ctctattgtttcatgatccaacaaa |
131 |
Q |
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| T |
6902103 |
ctctattgtttcatgatccaacaaa |
6902079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 94; Significance: 3e-46; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 3e-46
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 206138 - 206260
Alignment:
| Q |
7 |
aaacttatcattgcccaatgcgcctttttagcagtcatttaagtttgaagacaactcctagtccaacaattcctaaacctgcttataggattctaatctt |
106 |
Q |
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||||||||||| || ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
206138 |
aaacttatcatcgctcaatgcgcctttttaatagtcat--aagtttgaagacaactcctagtccaacaattcctaaacctgcttataggattctaatctt |
206235 |
T |
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| Q |
107 |
ctctattgtttcatgatccaacaaa |
131 |
Q |
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| T |
206236 |
ctctattgtttcatgatacaacaaa |
206260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 3e-46
Query Start/End: Original strand, 38 - 131
Target Start/End: Original strand, 209595 - 209688
Alignment:
| Q |
38 |
cagtcatttaagtttgaagacaactcctagtccaacaattcctaaacctgcttataggattctaatcttctctattgtttcatgatccaacaaa |
131 |
Q |
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| T |
209595 |
cagtcatttaagtttgaagacaactcctagtccaacaattcctaaacctgcttataggattctaatcttctctattgtttcatgatccaacaaa |
209688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 108
Target Start/End: Complemental strand, 34120813 - 34120737
Alignment:
| Q |
31 |
tttttagcagtcatttaagtttgaagacaactcctagtccaacaattcctaaacctgcttataggattctaatcttct |
108 |
Q |
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|||||| ||||||| |||||||||| |||| |||||||||||||||| || || || || |||| |||||||||||| |
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| T |
34120813 |
tttttaacagtcatctaagtttgaaaacaa-tcctagtccaacaatttctcaagcttctggtagggttctaatcttct |
34120737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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