View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2466-Insertion-2 (Length: 769)
Name: NF2466-Insertion-2
Description: NF2466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2466-Insertion-2 |
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Alignment Details
Target: chr8 (Bit Score: 312; Significance: 1e-175; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 25 - 407
Target Start/End: Complemental strand, 5093981 - 5093581
Alignment:
| Q |
25 |
aagaaggagaaatctacaaaacgaagacgttttgatcgctgtttttcttcagttgaggtggtgtctatggaggaaggaaagaagttgaaagaaatggatt |
124 |
Q |
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| T |
5093981 |
aagaaggaaaaatctacaaaacgaagacgttttgatcgttgtttttcttcggttgaggtggtgtctatggaggaaggaaagaagctgaaagaaatggatt |
5093882 |
T |
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| Q |
125 |
caaataagttgaaaagtgagatcaagaaatgggctaaggctgttgttgcatatgctcgtcaagttagtgctcgttttggaagttagcttccatagcaagt |
224 |
Q |
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| T |
5093881 |
caaataagttgaaaagtgagatcaagaaatgggctaaggctgttgttgcatatgctcgtcaagttagtgctcgttttggaagttagcttccatagcaagt |
5093782 |
T |
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| Q |
225 |
cacaaatgtaaattgaggtatcatagttaagtt----------------taatttttatacactgccattttgtaaaaagttatataatggccaaggata |
308 |
Q |
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| T |
5093781 |
cacaaatgtaaattgaggtatcatagttaagtttaataactatatagtttaattttaatacactgccattttgtaaaaagttatataatggccaaggata |
5093682 |
T |
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| Q |
309 |
tatgcgattttagaaaaagttacatttatacctttacctt-atagttgttaaaatttgtgtca-ttaacaggacttttgtattgaaaaattgttggtggg |
406 |
Q |
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| T |
5093681 |
tatgcgattttagaaaaagttacatttatacctttaccttaatagttgttaaaatttgtgtcatttaacaggacttttgtattgaaaaattgttggtggg |
5093582 |
T |
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| Q |
407 |
a |
407 |
Q |
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| T |
5093581 |
a |
5093581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 396 - 769
Target Start/End: Complemental strand, 5093538 - 5093155
Alignment:
| Q |
396 |
ttgttggtgggagaatatgtgcaaacacgttagagaacaagagaagtgtagtgtttgttgtacatgaaactgcatctctggaaaacaagaattatgcctc |
495 |
Q |
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| T |
5093538 |
ttgttggtgggagaatatgtgcaaacacgttagagaacaagagaagtgt-----ttgttgtacatgaaattgcatctctggaaaacaagaattatgcctc |
5093444 |
T |
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| Q |
496 |
atcattcagaaggtagattaacatattccaatctattgaagagatagatattgtaattataatcaggaatcaaaaaagtaatcttttgtcttccca---- |
591 |
Q |
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| T |
5093443 |
atcattcagaaggtagattaacatattccaatctattgaagagatagatattgtaattataatcaggaataaaaaaagtaatcttttgtcttcccattgt |
5093344 |
T |
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| Q |
592 |
--------------ttgtgtggaatgtatattaattctgcagcacaagttgtattttctttttgttagttgtaagtaaatactcattggttctgatgata |
677 |
Q |
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| T |
5093343 |
attgttaaactatattgtgtggaatgtatattaattctgcagcacaagttgtattttctttttgttagttgtaagtaaatactcattggttctgatgaaa |
5093244 |
T |
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| Q |
678 |
attttggtggcgtggcctatttagccattgaaaaatataaat-aatactaacattagtgt-aatacagcataacataaatacacagtttctttc |
769 |
Q |
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| T |
5093243 |
aatttg-----gtggcctatttagccattgaaaaatataaataaatactaacattagtgtcaatacagcataacataaatacacagtttctttc |
5093155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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