View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2466-Insertion-3 (Length: 685)

Name: NF2466-Insertion-3
Description: NF2466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2466-Insertion-3
NF2466-Insertion-3
[»] chr4 (23 HSPs)
chr4 (56-279)||(46708914-46709140)
chr4 (356-546)||(11147013-11147208)
chr4 (280-546)||(18936676-18936942)
chr4 (357-547)||(37177702-37177892)
chr4 (546-685)||(46709131-46709270)
chr4 (468-547)||(40533961-40534040)
chr4 (463-547)||(18381491-18381575)
chr4 (8-64)||(46708684-46708740)
chr4 (468-547)||(3102538-3102617)
chr4 (454-545)||(3102713-3102804)
chr4 (454-545)||(40534136-40534227)
chr4 (468-544)||(13690216-13690292)
chr4 (482-548)||(5121008-5121074)
chr4 (468-548)||(18936673-18936752)
chr4 (468-545)||(9231580-9231657)
chr4 (454-526)||(9231753-9231825)
chr4 (280-333)||(5121017-5121071)
chr4 (280-333)||(40533963-40534017)
chr4 (280-333)||(3102540-3102594)
chr4 (280-333)||(3102750-3102804)
chr4 (280-333)||(11147014-11147068)
chr4 (280-333)||(40534173-40534227)
chr4 (285-333)||(13690220-13690269)
[»] chr6 (11 HSPs)
chr6 (285-545)||(21389021-21389280)
chr6 (291-544)||(7789678-7789933)
chr6 (454-544)||(33022341-33022431)
chr6 (455-544)||(28472535-28472624)
chr6 (468-546)||(33022163-33022241)
chr6 (459-544)||(29859728-29859813)
chr6 (468-547)||(21389209-21389287)
chr6 (463-534)||(7789678-7789748)
chr6 (280-333)||(21389021-21389075)
chr6 (285-333)||(7789880-7789929)
chr6 (285-333)||(33022378-33022427)
[»] chr2 (31 HSPs)
chr2 (280-545)||(38085967-38086231)
chr2 (285-545)||(3671826-3672087)
chr2 (280-545)||(31470587-31470841)
chr2 (460-547)||(15332841-15332928)
chr2 (454-547)||(13280008-13280101)
chr2 (454-545)||(42028578-42028669)
chr2 (385-466)||(15330504-15330586)
chr2 (468-545)||(31860079-31860156)
chr2 (468-545)||(42028765-42028842)
chr2 (454-545)||(16115046-16115137)
chr2 (476-547)||(36059282-36059353)
chr2 (468-545)||(16115231-16115308)
chr2 (454-547)||(31860258-31860351)
chr2 (454-546)||(2059657-2059749)
chr2 (484-545)||(13279840-13279901)
chr2 (280-333)||(31470587-31470640)
chr2 (468-544)||(3671822-3671897)
chr2 (468-547)||(7317633-7317712)
chr2 (482-548)||(7317836-7317902)
chr2 (488-545)||(31470785-31470841)
chr2 (476-545)||(38085967-38086035)
chr2 (468-545)||(2059490-2059567)
chr2 (280-333)||(15330449-15330502)
chr2 (280-333)||(42028578-42028632)
chr2 (488-545)||(15330449-15330505)
chr2 (280-333)||(13279840-13279894)
chr2 (280-333)||(13280045-13280099)
chr2 (280-333)||(15332872-15332926)
chr2 (280-333)||(36059297-36059351)
chr2 (280-333)||(42028788-42028842)
chr2 (279-331)||(16115256-16115309)
[»] chr1 (33 HSPs)
chr1 (289-546)||(23346418-23346675)
chr1 (280-545)||(50892963-50893226)
chr1 (280-545)||(41833874-41834139)
chr1 (280-548)||(28217530-28217786)
chr1 (280-545)||(48871247-48871501)
chr1 (280-497)||(4156892-4157109)
chr1 (280-515)||(42180571-42180806)
chr1 (280-515)||(7062037-7062260)
chr1 (372-544)||(39669151-39669321)
chr1 (436-544)||(50904992-50905102)
chr1 (280-406)||(48752532-48752657)
chr1 (468-548)||(28217527-28217606)
chr1 (454-545)||(10227712-10227803)
chr1 (473-544)||(50905104-50905175)
chr1 (468-547)||(7062184-7062262)
chr1 (468-547)||(10227899-10227978)
chr1 (454-545)||(26552165-26552256)
chr1 (468-541)||(19059378-19059451)
chr1 (473-545)||(48752586-48752657)
chr1 (454-537)||(19059551-19059634)
chr1 (468-545)||(48871247-48871323)
chr1 (468-545)||(50893150-50893226)
chr1 (474-545)||(42180571-42180641)
chr1 (468-545)||(4156892-4156968)
chr1 (468-536)||(23346608-23346675)
chr1 (474-545)||(41834069-41834139)
chr1 (280-333)||(48871447-48871501)
chr1 (468-543)||(26551992-26552067)
chr1 (280-333)||(10227922-10227976)
chr1 (280-333)||(23346419-23346473)
chr1 (468-514)||(39669087-39669133)
chr1 (285-333)||(19059379-19059428)
chr1 (280-332)||(28217730-28217783)
[»] chr5 (46 HSPs)
chr5 (280-547)||(5146504-5146769)
chr5 (280-547)||(35454451-35454715)
chr5 (280-545)||(6518203-6518466)
chr5 (357-545)||(33377722-33377912)
chr5 (357-545)||(13823224-13823412)
chr5 (373-545)||(228717-228889)
chr5 (289-445)||(19897234-19897390)
chr5 (365-528)||(40881905-40882066)
chr5 (436-547)||(8489121-8489232)
chr5 (357-530)||(27319555-27319716)
chr5 (453-545)||(19898926-19899018)
chr5 (436-545)||(40881792-40881899)
chr5 (454-543)||(8323881-8323970)
chr5 (454-547)||(26534671-26534764)
chr5 (356-424)||(228891-228959)
chr5 (454-545)||(791592-791683)
chr5 (477-547)||(14069859-14069928)
chr5 (468-545)||(26534506-26534583)
chr5 (468-545)||(35454451-35454527)
chr5 (473-545)||(14388512-14388583)
chr5 (474-542)||(19897228-19897295)
chr5 (454-545)||(130421-130512)
chr5 (468-547)||(6518390-6518468)
chr5 (468-546)||(130253-130331)
chr5 (468-545)||(5146504-5146580)
chr5 (468-545)||(8323707-8323784)
chr5 (280-333)||(14388530-14388583)
chr5 (468-545)||(42630711-42630788)
chr5 (285-333)||(35454660-35454708)
chr5 (477-548)||(13823147-13823217)
chr5 (280-333)||(14069861-14069914)
chr5 (280-347)||(19898948-19899018)
chr5 (484-542)||(228987-229044)
chr5 (280-333)||(791813-791867)
chr5 (280-333)||(6518203-6518257)
chr5 (488-545)||(791810-791867)
chr5 (280-338)||(8489123-8489182)
chr5 (280-333)||(8323707-8323761)
chr5 (280-333)||(13823358-13823412)
chr5 (280-333)||(26534708-26534762)
chr5 (280-333)||(33377858-33377912)
chr5 (285-333)||(8323918-8323967)
chr5 (277-333)||(26534503-26534560)
chr5 (477-542)||(27319482-27319546)
chr5 (289-333)||(228994-229038)
chr5 (280-316)||(13823150-13823186)
[»] chr8 (16 HSPs)
chr8 (280-545)||(2814243-2814508)
chr8 (280-547)||(14193322-14193588)
chr8 (280-546)||(41539769-41540034)
chr8 (357-548)||(397083-397272)
chr8 (454-545)||(37994881-37994972)
chr8 (468-545)||(14193512-14193588)
chr8 (468-545)||(37994708-37994785)
chr8 (476-547)||(41539966-41540036)
chr8 (476-547)||(2814241-2814311)
chr8 (480-545)||(40587989-40588054)
chr8 (468-547)||(44036812-44036891)
chr8 (280-338)||(41539770-41539829)
chr8 (280-333)||(2814454-2814508)
chr8 (484-545)||(397007-397067)
chr8 (280-333)||(397007-397060)
chr8 (366-413)||(40586258-40586305)
[»] chr7 (16 HSPs)
chr7 (280-545)||(40521016-40521280)
chr7 (280-545)||(7298635-7298900)
chr7 (285-515)||(46567962-46568192)
chr7 (280-469)||(16979492-16979681)
chr7 (280-452)||(28948893-28949069)
chr7 (357-456)||(47478433-47478532)
chr7 (454-547)||(19805587-19805680)
chr7 (468-545)||(28948993-28949069)
chr7 (474-547)||(40521014-40521086)
chr7 (484-547)||(7298840-7298902)
chr7 (468-545)||(16979605-16979681)
chr7 (473-542)||(46567960-46568028)
chr7 (280-333)||(7298635-7298689)
chr7 (280-333)||(40521226-40521280)
chr7 (468-545)||(19804797-19804874)
chr7 (289-333)||(47478370-47478414)
[»] chr3 (20 HSPs)
chr3 (285-545)||(36635243-36635502)
chr3 (357-547)||(19580386-19580576)
chr3 (436-545)||(11651000-11651109)
chr3 (454-546)||(33214442-33214534)
chr3 (454-538)||(36274126-36274210)
chr3 (454-545)||(27073081-27073172)
chr3 (468-545)||(33219072-33219149)
chr3 (484-546)||(27072912-27072974)
chr3 (468-546)||(33214626-33214704)
chr3 (468-543)||(10598810-10598885)
chr3 (468-547)||(36274312-36274391)
chr3 (483-545)||(10599000-10599062)
chr3 (280-333)||(36635448-36635502)
chr3 (477-542)||(36635241-36635305)
chr3 (285-333)||(10598813-10598862)
chr3 (280-347)||(19580504-19580574)
chr3 (280-333)||(27072913-27072967)
chr3 (280-333)||(27073118-27073172)
chr3 (280-333)||(33214443-33214497)
chr3 (280-333)||(33219072-33219126)
[»] scaffold0140 (2 HSPs)
scaffold0140 (280-474)||(15847-16044)
scaffold0140 (463-546)||(15846-15929)
[»] scaffold0214 (4 HSPs)
scaffold0214 (468-545)||(11814-11891)
scaffold0214 (454-541)||(11630-11717)
scaffold0214 (285-338)||(11631-11685)
scaffold0214 (280-333)||(11837-11891)
[»] scaffold0135 (2 HSPs)
scaffold0135 (468-545)||(37446-37523)
scaffold0135 (454-526)||(37619-37691)
[»] scaffold0204 (1 HSPs)
scaffold0204 (280-333)||(17563-17616)


Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 56 - 279
Target Start/End: Original strand, 46708914 - 46709140
Alignment:
Q  56 acgaaatgaaagaatatgtatgtgtcaatgcattagaaaagtttaaaacggttcattgtctatttgaccaaaatcatcggttggatagtcaattaaatct 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  46708914 acgaaatgaaagaatatgtatgtgtcaatgcattagaaaagtttaaaacggttcattgtctatttgaccaaaatcatcggttggatagtcaattaagtct 46709013  T
Q  156 aacaacaaaattcacacacattaaaataatgctaagaagtgggacttgtgaattccaaaccacaccctaacataccaaatgttctcccaatcttttatat 255  Q
    ||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  46709014 aacgacaaaattcacacacattaaaatagtgctaagaagtgggacttgtgcattccaaaccacaccctaacataccaaatgttctcccaatcttttatat 46709113  T
Q  256 c---atatcaattgtaattacagacac 279  Q
    |   |||||||| |||||||| |||||    
T  46709114 cataatatcaatcgtaattacggacac 46709140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 356 - 546
Target Start/End: Complemental strand, 11147208 - 11147013
Alignment:
Q  356 ctttcttttaaccataattggtggtggtgaatactaactgcaaataatggttgagagagaggaggagcatttattcttcctttcttaaatcatttccaaa 455  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  11147208 ctttcttttaaccatgattggtggtggtgaatactaacagcaaataatggttgagagagaggaggagcatttatttttcctttcttaaattatttccaaa 11147109  T
Q  456 ttatttaaaaataaaacaatgac-----gtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctct 546  Q
    |||||| ||||||||||||||||     || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  11147108 ttattttaaaataaaacaatgacaagacgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgttcctacacaagaatttctct 11147013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 280 - 546
Target Start/End: Original strand, 18936676 - 18936942
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaactatcatttttacaaacaacaaatttaaa--tgacatgtcannnnnnnnctttcttttaaccataattggt 377  Q
    |||| ||||||||||| |||| ||| ||||||||||| |||||||||||||||| |||  ||| | ||||          ||||||||| ||| ||||||    
T  18936676 gagaaattcttgtgtatgaacgaacataactatcattcttacaaacaacaaattaaaacatgatacgtcatttttttc--ttcttttaatcatgattggt 18936773  T
Q  378 ggtggtgaatactaactgcaaataatggttgagagagaggaggagcatttattcttcctttcttaaatcatttccaaattatttaaaaataaaacaatga 477  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||| |||||||||| ||||||||||||||| |||||||||||||||    
T  18936774 ggtggtgaatactaactgcaaataatggtcgagagagaggaggagcagttatttttcatttcttaaattatttccaaattattttaaaataaaacaatga 18936873  T
Q  478 cgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctct 546  Q
    ||| |||||||||||||| |||||| |||||||||||||||||||||||||||| |||| |||||||||    
T  18936874 cgtgtcatgttttaatttattgtttgtaagaatgatatattaggttcgttcctagacaagaatttctct 18936942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 357 - 547
Target Start/End: Original strand, 37177702 - 37177892
Alignment:
Q  357 tttcttttaaccataattggtggtggtgaatactaactgcaaataatggttgagagagaggaggagcatttattcttcctttcttaaatcatttccaaat 456  Q
    ||||||||||  || |||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||| ||| |||||||||| ||||||||||    
T  37177702 tttcttttaattatgattggtggtggtaaatactaactgcaaataatggttgagagagaggaggagctgttatttttcatttcttaaattatttccaaat 37177801  T
Q  457 tatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctt 547  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||| |||| ||||||||||    
T  37177802 tattttaaaataaaacaatgacgtatcatgttttaatttgttgtttgtaagaatgatatgttatgttcgttcctagacaagaatttctctt 37177892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 546 - 685
Target Start/End: Original strand, 46709131 - 46709270
Alignment:
Q  546 ttacggacaccacagtttaggttttagaatcaaggaataattcatatggtggctagaataatactctccatagaattgtcaactaacaacattcaaagtt 645  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  46709131 ttacggacaccacggtttaggttttagaatcaaggaataattcatatggtggctagaataatactctccatagaattgtcaactagcaacattcaaagtt 46709230  T
Q  646 gagagataagcacgttgcattgaactcaaacatacccatc 685  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  46709231 gagagataagcacgttgcattgaactcaaccatacccatc 46709270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 468 - 547
Target Start/End: Complemental strand, 40534040 - 40533961
Alignment:
Q  468 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctt 547  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||| ||||||||||    
T  40534040 aaaacaacgacgtatcatgttttaatttgttgtttgtaagaatgataggttaggttcgttcctacacaagaatttctctt 40533961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 463 - 547
Target Start/End: Original strand, 18381491 - 18381575
Alignment:
Q  463 aaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctt 547  Q
    ||||||||||||||| || |||||||||||||||||| || ||||||||| || |||||||||||||||||||| ||||||||||    
T  18381491 aaaataaaacaatgatgtgtcatgttttaatttgttgcttgtaagaatgaaatgttaggttcgttcctacacaagaatttctctt 18381575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 46708684 - 46708740
Alignment:
Q  8 ttgttgtcattgtttgagctatgctaaattttacgaagatgttgacaaacgaaatga 64  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46708684 ttgttgtcattgtttgagctatgctaaattttacgaagatgttgacaaacgaaatga 46708740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 468 - 547
Target Start/End: Complemental strand, 3102617 - 3102538
Alignment:
Q  468 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctt 547  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||||||  |||||||||||||||||||| ||||||||||    
T  3102617 aaaacaacgacgtatcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 3102538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 454 - 545
Target Start/End: Original strand, 3102713 - 3102804
Alignment:
Q  454 aattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 545  Q
    |||||||| |||| ||||||| ||||| ||||||||||||||||||||| |||| ||||||  |||||||||||||||||||| ||||||||    
T  3102713 aattattttaaaaaaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 3102804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 454 - 545
Target Start/End: Original strand, 40534136 - 40534227
Alignment:
Q  454 aattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 545  Q
    |||||||| |||| ||||||| ||||| ||||||||||||||||||||| |||| ||||||  |||||||||||||||||||| ||||||||    
T  40534136 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 40534227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 468 - 544
Target Start/End: Complemental strand, 13690292 - 13690216
Alignment:
Q  468 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttct 544  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||||||  |||||||||||||||||||| |||||||    
T  13690292 aaaacaacgacgtatcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttct 13690216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 482 - 548
Target Start/End: Original strand, 5121008 - 5121074
Alignment:
Q  482 tcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctta 548  Q
    ||||||||||||||||||||| |||||||||||| ||||||| |||||||||||| |||||||||||    
T  5121008 tcatgttttaatttgttgtttgtaagaatgatatgttaggtttgttcctacacaagaatttctctta 5121074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 468 - 548
Target Start/End: Complemental strand, 18936752 - 18936673
Alignment:
Q  468 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctta 548  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||  ||| |||||||| ||||||| |||||||||||    
T  18936752 aaaaaaatgacgtatcatgttttaatttgttgtttgtaagaatgata-gttatgttcgttcatacacaagaatttctctta 18936673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 468 - 545
Target Start/End: Complemental strand, 9231657 - 9231580
Alignment:
Q  468 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 545  Q
    ||||||| ||||| ||||||||||||||||||||| |||| ||| ||   ||||||||||||||||||| ||||||||    
T  9231657 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatggtaggctaggttcgttcctacacaagaatttctc 9231580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 454 - 526
Target Start/End: Original strand, 9231753 - 9231825
Alignment:
Q  454 aattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgt 526  Q
    |||||||| |||| ||||||| |||||| |||||||||||||||||||| |||| ||||||  ||||||||||    
T  9231753 aattattttaaaagaaaacaacgacgtagcatgttttaatttgttgtttgtaaggatgataggttaggttcgt 9231825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 280 - 333
Target Start/End: Complemental strand, 5121071 - 5121017
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaac-tatcatttttacaaacaacaaatt 333  Q
    |||| |||||||||||||||| |||||||| ||||||| ||||||||||||||||    
T  5121071 gagaaattcttgtgtaggaacaaacctaacatatcattcttacaaacaacaaatt 5121017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 280 - 333
Target Start/End: Original strand, 40533963 - 40534017
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaa-ctatcatttttacaaacaacaaatt 333  Q
    |||| |||||||||||||||| ||||||| |||||||| ||||||||||||||||    
T  40533963 gagaaattcttgtgtaggaacgaacctaacctatcattcttacaaacaacaaatt 40534017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 280 - 333
Target Start/End: Original strand, 3102540 - 3102594
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaa-ctatcatttttacaaacaacaaatt 333  Q
    |||| |||||||||||||||| ||||||| |||||||  ||||||||||||||||    
T  3102540 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaatt 3102594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 280 - 333
Target Start/End: Complemental strand, 3102804 - 3102750
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaa-ctatcatttttacaaacaacaaatt 333  Q
    |||| |||||||||||||||| ||||||| |||||||  ||||||||||||||||    
T  3102804 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaatt 3102750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 280 - 333
Target Start/End: Original strand, 11147014 - 11147068
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaa-ctatcatttttacaaacaacaaatt 333  Q
    |||| |||||||||||||||| |||||||  ||||||| ||||||||||||||||    
T  11147014 gagaaattcttgtgtaggaacgaacctaatatatcattcttacaaacaacaaatt 11147068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 280 - 333
Target Start/End: Complemental strand, 40534227 - 40534173
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaa-ctatcatttttacaaacaacaaatt 333  Q
    |||| |||||||||||||||| ||||||| |||||||  ||||||||||||||||    
T  40534227 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaatt 40534173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 333
Target Start/End: Original strand, 13690220 - 13690269
Alignment:
Q  285 attcttgtgtaggaactaacctaa-ctatcatttttacaaacaacaaatt 333  Q
    |||||||||||||||| ||||||| |||||||  ||||||||||||||||    
T  13690220 attcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaatt 13690269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 164; Significance: 3e-87; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 285 - 545
Target Start/End: Complemental strand, 21389280 - 21389021
Alignment:
Q  285 attcttgtgtaggaactaacctaactatcatttttacaaacaacaaatttaaa--tgacatgtcannnnnnnnctttcttttaaccataattggtggtgg 382  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||| |||  ||||| ||||         |||||||||||||| |||||||||||    
T  21389280 attcttgtgtaggaacgaacctaactatcattcttacaaacaacaaattaaaacatgacacgtcatttttt---tttcttttaaccatgattggtggtgg 21389184  T
Q  383 tgaatactaactgcaaataatggttgagagagaggaggagcatttattcttcctttcttaaatcatttccaaattatttaaaaataaaacaatgacgtat 482  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||| |||||||| ||||||||||||||||||||    
T  21389183 tgaatactaactgcaaataatggttgagagagaggaggagcatttatttttcatttcttaaattatttcctaattattttaaaataaaacaatgacgtat 21389084  T
Q  483 catgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 545  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||||||| || ||||||||    
T  21389083 catgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacagaagaatttctc 21389021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 291 - 544
Target Start/End: Original strand, 7789678 - 7789933
Alignment:
Q  291 gtgtaggaactaacctaactatcatttttacaaacaacaaatttaaa--tgacatgtcannnnnnnnctttcttttaaccataattggtggtggtgaata 388  Q
    |||||||||| ||||||||||||||| |||||||||||||||| |||  ||||||||||         |||||||||||||| |||||||||||||||||    
T  7789678 gtgtaggaacgaacctaactatcattcttacaaacaacaaattaaaacatgacatgtcattgtttttttttcttttaaccatgattggtggtggtgaata 7789777  T
Q  389 ctaactgcaaataatggttgagagagaggaggagcatttattcttcctttcttaaatcatttccaaattatttaaaaataaaacaatgacgtatcatgtt 488  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||  |||||||||| |||||| ||||||||   || ||||||||||||| |||||||    
T  7789778 ctaactgcaaataatggttgagagagaggaggagcaattattttttatttcttaaattatttcctaattattttttaaaaaaacaatgacgtgtcatgtt 7789877  T
Q  489 ttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttct 544  Q
    |||||||||||||| |||||||||||| |||||||| ||||||||||| |||||||    
T  7789878 ttaatttgttgtttgtaagaatgatatgttaggttcattcctacacaagaatttct 7789933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 454 - 544
Target Start/End: Original strand, 33022341 - 33022431
Alignment:
Q  454 aattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttct 544  Q
    |||||||| |||| ||||||| ||||| ||||||||||||||||||||| |||| ||||||| |||||||||||||||||||| |||||||    
T  33022341 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttct 33022431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 455 - 544
Target Start/End: Original strand, 28472535 - 28472624
Alignment:
Q  455 attatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttct 544  Q
    ||||||| |||| |||| ||| |||| | ||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  28472535 attattttaaaagaaaaaaataacgtgttatgatttaatttgttgtttataaaaatgatatattaggttcgttcctacataaaaatttct 28472624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 468 - 546
Target Start/End: Complemental strand, 33022241 - 33022163
Alignment:
Q  468 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctct 546  Q
    ||||||| ||||| ||||||||||||||||||||| |||| ||||||  |||||||||||||||||||| |||||||||    
T  33022241 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaataatttctct 33022163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 459 - 544
Target Start/End: Original strand, 29859728 - 29859813
Alignment:
Q  459 tttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttct 544  Q
    |||||||  |||| ||| |||| | ||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  29859728 tttaaaagaaaaaaaataacgtgttatgatttaatttgttgtttataaaaatgatatattaggttcgttcctacataaaaatttct 29859813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 468 - 547
Target Start/End: Original strand, 21389209 - 21389287
Alignment:
Q  468 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctt 547  Q
    |||| |||||||| ||||||||||||||||||||| |||||||||||  |||||||||||||||||||| ||||| ||||    
T  21389209 aaaaaaatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttatctt 21389287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 463 - 534
Target Start/End: Complemental strand, 7789748 - 7789678
Alignment:
Q  463 aaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacac 534  Q
    |||| ||||||||||| | ||||||||||||||||||||| |||||||||||  ||||||||||||||||||    
T  7789748 aaaaaaaaacaatgacatgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacac 7789678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 280 - 333
Target Start/End: Original strand, 21389021 - 21389075
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaac-tatcatttttacaaacaacaaatt 333  Q
    |||| |||||| ||||||||| |||||||| ||||||| ||||||||||||||||    
T  21389021 gagaaattcttctgtaggaacgaacctaacatatcattcttacaaacaacaaatt 21389075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 333
Target Start/End: Complemental strand, 7789929 - 7789880
Alignment:
Q  285 attcttgtgtaggaactaacctaac-tatcatttttacaaacaacaaatt 333  Q
    |||||||||||||||  |||||||| ||||||| ||||||||||||||||    
T  7789929 attcttgtgtaggaatgaacctaacatatcattcttacaaacaacaaatt 7789880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 333
Target Start/End: Complemental strand, 33022427 - 33022378
Alignment:
Q  285 attcttgtgtaggaactaacctaac-tatcatttttacaaacaacaaatt 333  Q
    |||||||||||||||| |||||||| ||||||  ||||||||||||||||    
T  33022427 attcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaatt 33022378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 149; Significance: 2e-78; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 280 - 545
Target Start/End: Original strand, 38085967 - 38086231
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaactatcatttttacaaacaacaaatttaaa--tgacatgtcannnnnnnnctttcttttaaccataattggt 377  Q
    |||| |||||||||||||||| || |||||||||||| |||||||||||||||| |||  ||||| |||          |||||||||||||| ||||||    
T  38085967 gagaaattcttgtgtaggaacgaaactaactatcattcttacaaacaacaaattaaaacatgacacgtcgttttat---tttcttttaaccatgattggt 38086063  T
Q  378 ggtggtgaatactaactgcaaataatggttgagagagaggaggagcatttattcttcctttcttaaatcatttccaaattatttaaaaataaaacaatga 477  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||| ||||| ||||||||| |||||||||||||||    
T  38086064 ggtggtgaatactaactgcaaataatggttgagagagaggaggagcagttatttttcatttcttaaattatttcaaaattattttaaaataaaacaatga 38086163  T
Q  478 cgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 545  Q
    |||||||| |||||||||||||||| |||||||||||| ||||||| || ||||||||||||||||||    
T  38086164 cgtatcatattttaatttgttgtttgtaagaatgatatgttaggtttgtccctacacaaaaatttctc 38086231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 285 - 545
Target Start/End: Original strand, 3671826 - 3672087
Alignment:
Q  285 attcttgtgtaggaactaacctaactatcatttttacaaacaacaaatttaaa--tgacatgtcannnnnnnnctttcttttaaccataattggtggtgg 382  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||| |||  |||||  |||        ||| ||||||||||| |||| ||||||    
T  3671826 attcttgtgtaggaacgaacctaactatcattcttacaaacaacaaattaaaacatgacacatcattttttttctt-cttttaaccatgattgatggtgg 3671924  T
Q  383 tgaatactaactgcaaataatggttgagagagaggaggagcatttattcttcctttcttaaatcatttccaaattatttaaaaataaaacaatgacgtat 482  Q
    |||||| ||||  ||||||||||||||||||||||||||||| ||||| ||| |||||||||| ||||||||||||||| |||||||||||||||||| |    
T  3671925 tgaatagtaaccacaaataatggttgagagagaggaggagcagttatttttcatttcttaaattatttccaaattattttaaaataaaacaatgacgtgt 3672024  T
Q  483 catgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 545  Q
     || |||||||||||| ||| ||| ||||||||||||| ||||||||| || || ||||||||    
T  3672025 tatattttaatttgttatttgtaaaaatgatatattagattcgttcctccataagaatttctc 3672087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 280 - 545
Target Start/End: Complemental strand, 31470841 - 31470587
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaactatcatttttacaaacaacaaatttaa--atgacatgtcannnnnnnnctttcttttaaccataattggt 377  Q
    |||| ||| |||||||||||| ||||||||||||||| |||||||||||||||| ||  ||||||  |||         |||||||||||||| ||||||    
T  31470841 gagaaatttttgtgtaggaacgaacctaactatcattcttacaaacaacaaattaaataatgacacatcattttt----tttcttttaaccatgattggt 31470746  T
Q  378 ggtggtgaatactaactgcaaataatggttgagagagaggaggagcatttattcttcctttcttaaatcatttccaaattatttaaaaataaaacaatga 477  Q
    |||||||||||        ||| ||||||||||||||||||| |||| ||||| ||| |||||||||| |||||| |||||||| |||||||||||||||    
T  31470745 ggtggtgaata--------aaacaatggttgagagagaggagaagcaattatttttcatttcttaaattatttcctaattattttaaaataaaacaatga 31470654  T
Q  478 cgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 545  Q
    ||| ||||||||||||||||||||| ||| |||||||  |||||||||||||||||||| ||||||||    
T  31470653 cgtgtcatgttttaatttgttgtttgtaaaaatgata-gttaggttcgttcctacacaagaatttctc 31470587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 460 - 547
Target Start/End: Original strand, 15332841 - 15332928
Alignment:
Q  460 ttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctt 547  Q
    ||||||||||||||||||||| |||||||||||||| |||||| |||||||||||| |||||||||||||||||||| ||||||||||    
T  15332841 ttaaaaataaaacaatgacgtgtcatgttttaatttattgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctctt 15332928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 454 - 547
Target Start/End: Original strand, 13280008 - 13280101
Alignment:
Q  454 aattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctt 547  Q
    |||||||| |||| ||||||| ||||||||||||||||||||||||||| |||| ||||||  |||||||||||||||||||| ||||||||||    
T  13280008 aattattttaaaagaaaacaacgacgtatcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 13280101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 454 - 545
Target Start/End: Complemental strand, 42028669 - 42028578
Alignment:
Q  454 aattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 545  Q
    |||||||| |||| ||||||| ||||| ||||||||||||||||||||| |||||||||||  |||||||||||||||||||| ||||||||    
T  42028669 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaagaatgataggttaggttcgttcctacacaagaatttctc 42028578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 385 - 466
Target Start/End: Original strand, 15330504 - 15330586
Alignment:
Q  385 aatactaactgcaaataatggttgagagagaggaggagca-tttattcttcctttcttaaatcatttccaaattatttaaaaa 466  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||| |||||| |||||||| ||||    
T  15330504 aatactaactgcaaataatggttgagagagaggaggagcagtttatttttcatttcttaaattatttcctaattattttaaaa 15330586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 468 - 545
Target Start/End: Complemental strand, 31860156 - 31860079
Alignment:
Q  468 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 545  Q
    |||| |||||||| |||||||||||||||||||||||||| ||||||  |||||||||||||||||||| ||||||||    
T  31860156 aaaataatgacgtgtcatgttttaatttgttgtttataaggatgataggttaggttcgttcctacacaagaatttctc 31860079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 468 - 545
Target Start/End: Original strand, 42028765 - 42028842
Alignment:
Q  468 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 545  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||||||  |||||||||||||||||||| ||||||||    
T  42028765 aaaacaacgacgtatcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 42028842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 454 - 545
Target Start/End: Complemental strand, 16115137 - 16115046
Alignment:
Q  454 aattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 545  Q
    |||||||| |||| ||||||| ||||| |||| |||||||||||||||| |||| ||||||  |||||||||||| ||||||||||||||||    
T  16115137 aattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcttacacaaaaatttctc 16115046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 476 - 547
Target Start/End: Original strand, 36059282 - 36059353
Alignment:
Q  476 gacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctt 547  Q
    ||||| ||||||||||||||||||||| |||| ||||||| |||||||||||||||||||| ||||||||||    
T  36059282 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctctt 36059353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 468 - 545
Target Start/End: Original strand, 16115231 - 16115308
Alignment:
Q  468 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 545  Q
    |||||||||| || |||| ||||| |||||||||| |||||||||||  |||||||||||||||||||||||||||||    
T  16115231 aaaacaatgaagtgtcatattttagtttgttgtttgtaagaatgataggttaggttcgttcctacacaaaaatttctc 16115308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 454 - 547
Target Start/End: Original strand, 31860258 - 31860351
Alignment:
Q  454 aattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctt 547  Q
    |||||||| |||| ||||||| || || ||||||||||||||||||||| |||| ||| ||  |||||||||||||||||||| ||||||||||    
T  31860258 aattattttaaaagaaaacaacgatgtgtcatgttttaatttgttgtttgtaaggatggtaggttaggttcgttcctacacaagaatttctctt 31860351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 454 - 546
Target Start/End: Original strand, 2059657 - 2059749
Alignment:
Q  454 aattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctct 546  Q
    |||||||| |||| ||||||| ||||| |||| |||||||||||||||| |||| ||||||  ||||||||||||| |||||| |||||||||    
T  2059657 aattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttccaacacaataatttctct 2059749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 484 - 545
Target Start/End: Complemental strand, 13279901 - 13279840
Alignment:
Q  484 atgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 545  Q
    ||||||||||||||||||| |||| |||||| ||||||||||||||||||||| ||||||||    
T  13279901 atgttttaatttgttgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 13279840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 280 - 333
Target Start/End: Original strand, 31470587 - 31470640
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaactatcatttttacaaacaacaaatt 333  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  31470587 gagaaattcttgtgtaggaacgaacctaactatcatttttacaaacaacaaatt 31470640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 468 - 544
Target Start/End: Complemental strand, 3671897 - 3671822
Alignment:
Q  468 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttct 544  Q
    |||| ||||| || ||||||||||||||||||||| |||||||||||  |||||||||||||||||||| |||||||    
T  3671897 aaaaaaatgatgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttct 3671822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 468 - 547
Target Start/End: Complemental strand, 7317712 - 7317633
Alignment:
Q  468 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctt 547  Q
    ||||||| ||||| |||||||||| |||||||||  |||| ||||||  |||||||||||||||||||||| ||||||||    
T  7317712 aaaacaacgacgtgtcatgttttagtttgttgttagtaaggatgataggttaggttcgttcctacacaaaagtttctctt 7317633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 482 - 548
Target Start/End: Original strand, 7317836 - 7317902
Alignment:
Q  482 tcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctta 548  Q
    |||||||||||||| |||||| |||| ||||||  |||||||||||||||||||| |||||||||||    
T  7317836 tcatgttttaatttattgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctta 7317902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 488 - 545
Target Start/End: Original strand, 31470785 - 31470841
Alignment:
Q  488 tttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 545  Q
    ||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||    
T  31470785 tttaatttgttgtttgtaagaatgatag-ttaggttcgttcctacacaaaaatttctc 31470841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 476 - 545
Target Start/End: Complemental strand, 38086035 - 38085967
Alignment:
Q  476 gacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 545  Q
    ||||| ||||||||||||||||||||| |||||||||||  |||| ||||||||||||||| ||||||||    
T  38086035 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttagtttcgttcctacacaagaatttctc 38085967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 468 - 545
Target Start/End: Complemental strand, 2059567 - 2059490
Alignment:
Q  468 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 545  Q
    |||||||||| || |||| ||||| |||||||||| |||| ||||||  |||||||||||||||| ||| ||||||||    
T  2059567 aaaacaatgaagtgtcatattttagtttgttgtttgtaaggatgataggttaggttcgttcctacccaagaatttctc 2059490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 280 - 333
Target Start/End: Original strand, 15330449 - 15330502
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaactatcatttttacaaacaacaaatt 333  Q
    |||| |||||||||||||||| ||||||||||||||| |||||||||| |||||    
T  15330449 gagaaattcttgtgtaggaacgaacctaactatcattcttacaaacaataaatt 15330502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 280 - 333
Target Start/End: Original strand, 42028578 - 42028632
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaa-ctatcatttttacaaacaacaaatt 333  Q
    |||| |||||||||||||||| ||||||| |||||||| ||||||||||||||||    
T  42028578 gagaaattcttgtgtaggaacgaacctaacctatcattcttacaaacaacaaatt 42028632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 488 - 545
Target Start/End: Complemental strand, 15330505 - 15330449
Alignment:
Q  488 tttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 545  Q
    |||||||| |||||| |||||||||||  |||||||||||||||||||| ||||||||    
T  15330505 tttaatttattgtttgtaagaatgatag-ttaggttcgttcctacacaagaatttctc 15330449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 280 - 333
Target Start/End: Original strand, 13279840 - 13279894
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaa-ctatcatttttacaaacaacaaatt 333  Q
    |||| |||||||||||||||| ||||||| |||||||  ||||||||||||||||    
T  13279840 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaacaaatt 13279894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 280 - 333
Target Start/End: Complemental strand, 13280099 - 13280045
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaa-ctatcatttttacaaacaacaaatt 333  Q
    |||| |||||||||||||||| ||||||| |||||||  ||||||||||||||||    
T  13280099 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaatt 13280045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 280 - 333
Target Start/End: Complemental strand, 15332926 - 15332872
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaac-tatcatttttacaaacaacaaatt 333  Q
    |||| |||||||||||||||| |||||||| ||||||| |||||||||| |||||    
T  15332926 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaataaatt 15332872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 280 - 333
Target Start/End: Complemental strand, 36059351 - 36059297
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaac-tatcatttttacaaacaacaaatt 333  Q
    |||| |||||||||||||||| |||||||| ||||||  ||||||||||||||||    
T  36059351 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaatt 36059297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 280 - 333
Target Start/End: Complemental strand, 42028842 - 42028788
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaa-ctatcatttttacaaacaacaaatt 333  Q
    |||| |||||||||||||||| ||||||| |||||||  ||||||||||||||||    
T  42028842 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaatt 42028788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 331
Target Start/End: Complemental strand, 16115309 - 16115256
Alignment:
Q  279 cgagagattcttgtgtaggaactaacctaac-tatcatttttacaaacaacaaa 331  Q
    ||||| ||| |||||||||||| |||||||| ||||||| ||||||||||||||    
T  16115309 cgagaaatttttgtgtaggaacgaacctaacctatcattcttacaaacaacaaa 16115256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 149; Significance: 2e-78; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 289 - 546
Target Start/End: Complemental strand, 23346675 - 23346418
Alignment:
Q  289 ttgtgtaggaactaacctaactatcatttttacaaacaacaaatttaaa--tgacatgtcannnnnnnnctttcttttaaccataattggtggtggtgaa 386  Q
    |||||||||||| ||||||||||||||| |||||||||| ||||| |||  ||||||||||         |||||||||||||| |||||||||||||||    
T  23346675 ttgtgtaggaacgaacctaactatcattcttacaaacaataaattaaaacatgacatgtcattttttt--tttcttttaaccatgattggtggtggtgaa 23346578  T
Q  387 tactaactgcaaataatggttgagagagaggaggagcatttattcttcctttcttaaatcatttccaaattatttaaaaataaaacaatgacgtatcatg 486  Q
    ||||||||||||||||||||||||||||||||| |||| ||||| ||| |||||||||| ||||||||||||||| ||||||||| |||||||| |||||    
T  23346577 tactaactgcaaataatggttgagagagaggagtagcagttatttttcatttcttaaattatttccaaattattttaaaataaaaaaatgacgtgtcatg 23346478  T
Q  487 ttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctct 546  Q
    ||||||||| |||||| |||||||||||| |||||||||||||||||||| |||||||||    
T  23346477 ttttaatttattgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctct 23346418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 280 - 545
Target Start/End: Complemental strand, 50893226 - 50892963
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaactatcatttttacaaacaacaaatttaaa--tgacatgtcannnnnnnnctttcttttaaccataattggt 377  Q
    |||| |||||||||||||||| ||||||||||||||| |||||||||||||||| |||  |||||  |||         |||||||||||||| |||| |    
T  50893226 gagaaattcttgtgtaggaacgaacctaactatcattattacaaacaacaaattaaaacatgacacatcattttt----tttcttttaaccatgattgat 50893131  T
Q  378 ggtggtgaatactaactgcaaataatggttgagagagaggaggagcatttattcttcctttcttaaatcatttccaaattatttaaaaataaaacaatga 477  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||| ||||| ||| |||||||||| |||||| |||||||| |||||||||||||||    
T  50893130 ggtggtgaatactaaccgcaaataatggttgagagagaggagaagcagttatttttcatttcttaaattatttcctaattattttaaaataaaacaatga 50893031  T
Q  478 cgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 545  Q
    ||| ||||||||||||||||||||| |||||||||||| ||| ||||||| |||||||||||||||||    
T  50893030 cgtgtcatgttttaatttgttgtttgtaagaatgatatgttaagttcgttgctacacaaaaatttctc 50892963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 280 - 545
Target Start/End: Complemental strand, 41834139 - 41833874
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaactatcatttttacaaacaacaaatttaaa--tgacatgtcannnnnnnnctttcttttaaccataattggt 377  Q
    |||| |||||||||||||||| ||| |||||| |||| |||||||||||||||| |||  ||||| ||||         ||| |||||||||| |||| |    
T  41834139 gagaaattcttgtgtaggaacgaacataactagcattattacaaacaacaaattaaaacatgacacgtcatattttt--ttttttttaaccatgattgat 41834042  T
Q  378 ggtggtgaatactaactgcaaataatggttgagagagaggaggagcatttattcttcctttcttaaatcatttccaaattatttaaaaataaaacaatga 477  Q
      ||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||| |||||||||| |||||| |||||||| ||||||||| |||||    
T  41834041 aatggtgaatactgactgcaaataatggttgagagagaggaggagcagttatttttcatttcttaaattatttcctaattattttaaaataaaataatga 41833942  T
Q  478 cgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 545  Q
    ||| ||||||||||||||||||| | ||||||||||||||||| |||||| ||| |||| ||||||||    
T  41833941 cgtgtcatgttttaatttgttgtgtgtaagaatgatatattagattcgtttctatacaagaatttctc 41833874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 280 - 548
Target Start/End: Original strand, 28217530 - 28217786
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaactatcatttttacaaacaacaaatttaaa--tgacatgtcannnnnnnnctttcttttaaccataattggt 377  Q
    |||| |||| ||||||||||| ||||||| ||||||| |||||||||||||||| |||  ||||| ||||         |||||||||||||| ||||||    
T  28217530 gagaaattcctgtgtaggaacgaacctaattatcattcttacaaacaacaaattaaaacatgacacgtcatttttt---tttcttttaaccatgattggt 28217626  T
Q  378 ggtggtgaatactaactgcaaataatggttgagagagaggaggagcatttattcttcctttcttaaatcatttccaaattatttaaaaataaaacaatga 477  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||| ||||||           ||||||||| |||||||||||||||    
T  28217627 ggtggtgaatagtaactgcaaataatggttgagagagaggaggagcaattatttttcatttctt-----------aaattattttaaaataaaacaatga 28217715  T
Q  478 cgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctta 548  Q
     || ||||||||| ||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||    
T  28217716 tgtgtcatgttttgatttgttgtttgtaagaatgatatgttaggttcgttcctacacaataatttctctta 28217786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 280 - 545
Target Start/End: Original strand, 48871247 - 48871501
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaactatcatttttacaaacaacaaatttaaa--tgacatgtcannnnnnnnctttcttttaaccataattggt 377  Q
    |||| |||||||||||||||| ||||||||||||||| ||||||| |||||||| |||  |||||  |||         |||||||||||||| ||||||    
T  48871247 gagaaattcttgtgtaggaacgaacctaactatcattcttacaaataacaaattaaaacatgacacatcattttttt--tttcttttaaccatgattggt 48871344  T
Q  378 ggtggtgaatactaactgcaaataatggttgagagagaggaggagcatttattcttcctttcttaaatcatttccaaattatttaaaaataaaacaatga 477  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||| ||||||           ||||||||| |||||||||||||||    
T  48871345 ggtggtgaatattaactgcaaataatagttgagagagaggaggagcagttatttttcatttctt-----------aaattattttaaaataaaacaatga 48871433  T
Q  478 cgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 545  Q
    |||   ||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||    
T  48871434 cgtgcaatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 48871501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 280 - 497
Target Start/End: Original strand, 4156892 - 4157109
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaactatcatttttacaaacaacaaatttaaa--tgacatgtcannnnnnnnctttcttttaaccataattggt 377  Q
    |||| |||||||||||||||  ||||||||||||||| ||||||| || ||||| |||  ||||| ||||         |||||||||||||| ||||||    
T  4156892 gagaaattcttgtgtaggaaggaacctaactatcattcttacaaataataaattaaaacatgacacgtcattttttt--tttcttttaaccatgattggt 4156989  T
Q  378 ggtggtgaatactaactgcaaataatggttgagagagaggaggagcatttattcttcctttcttaaatcatttccaaattatttaaaaataaaacaatga 477  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||| ||||||||||||||| |||||||||||||||    
T  4156990 ggtggtgaatactaactgcaaataatggttgagagagaggaggagcagttatttttcatttcttaaattatttccaaattattttaaaataaaacaatga 4157089  T
Q  478 cgtatcatgttttaatttgt 497  Q
    |||   |||||||| |||||    
T  4157090 cgtgcaatgttttactttgt 4157109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 280 - 515
Target Start/End: Original strand, 42180571 - 42180806
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaactatcatttttacaaacaacaaatttaaa--tgacatgtcannnnnnnnctttcttttaaccataattggt 377  Q
    |||| |||||||||||||||| |||||||||| |||| |||||||||||||||| |||  ||||| ||||         |||||||||||||| ||||||    
T  42180571 gagaaattcttgtgtaggaacgaacctaactagcattattacaaacaacaaattaaaacatgacacgtcatattttt--tttcttttaaccatgattggt 42180668  T
Q  378 ggtggtgaatactaactgcaaataatggttgagagagaggaggagcatttattcttcctttcttaaatcatttccaaattatttaaaaataaaacaatga 477  Q
     |||||||||||| || ||||||||||||||||||| |||||||||| ||||| ||| |||||||||| |||| | |||||||| ||||||||| |||||    
T  42180669 agtggtgaatactgaccgcaaataatggttgagagaaaggaggagcagttatttttcatttcttaaattattttctaattattttaaaataaaataatga 42180768  T
Q  478 cgtatcatgttttaatttgttgtttataagaatgatat 515  Q
     || |||||||||| |||||||||| ||||||||||||    
T  42180769 tgtgtcatgttttagtttgttgtttgtaagaatgatat 42180806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 280 - 515
Target Start/End: Complemental strand, 7062260 - 7062037
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaactatcatttttacaaacaacaaatttaaat--gacatgtcannnnnnnnctttcttttaaccataattggt 377  Q
    |||| ||| |||||||||||| |||||||||||||||||||||||||||||||| ||||  |||| ||||         |||||||||||||| |||| |    
T  7062260 gagaaatttttgtgtaggaacgaacctaactatcatttttacaaacaacaaattaaaatatgacacgtcatttttttt-tttcttttaaccatgattgat 7062162  T
Q  378 ggtggtgaatactaactgcaaataatggttgagagagaggaggagcatttattcttcctttcttaaatcatttccaaattatttaaaaataaaacaatga 477  Q
    |||||||||||||||||||||||||||||||||  |||||||||||| ||||| ||| ||||||           ||||||||| |||||||||||||||    
T  7062161 ggtggtgaatactaactgcaaataatggttgag--agaggaggagcagttatttttcatttctt-----------aaattattttaaaataaaacaatga 7062075  T
Q  478 cgtatcatgttttaatttgttgtttataagaatgatat 515  Q
    ||| ||||||||||||||||||||| ||||||||||||    
T  7062074 cgtgtcatgttttaatttgttgtttgtaagaatgatat 7062037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 372 - 544
Target Start/End: Original strand, 39669151 - 39669321
Alignment:
Q  372 attggtggtggtgaatactaactgcaaataatggttgagagagaggaggagcatttattcttcctttcttaaatcatttccaaattatttaaaaataaaa 471  Q
    |||| |||||||||||| |||| |||||||||||||||||  ||||||||||| ||||| ||| |||| ||||| |||||| |||||||| |||||||||    
T  39669151 attgatggtggtgaatattaaccgcaaataatggttgaga--gaggaggagcagttatttttcatttcctaaattatttcctaattattttaaaataaaa 39669248  T
Q  472 caatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttct 544  Q
    |||| |||| ||||||||||||||||| ||| |||||||||||| ||| ||||||| |||||||| |||||||    
T  39669249 caataacgtgtcatgttttaatttgttctttgtaagaatgatatgttaagttcgtttctacacaagaatttct 39669321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 436 - 544
Target Start/End: Complemental strand, 50905102 - 50904992
Alignment:
Q  436 tttcttaaatcatttccaaattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatg--atatattaggttcgttcctaca 533  Q
    |||||||||| |||||||||| |||| |||||||||||||||||| ||||||||||| ||||||||| ||| ||||  ||||||||||||||||||||||    
T  50905102 tttcttaaattatttccaaataattttaaaataaaacaatgacgtgtcatgttttaacttgttgtttgtaaaaatgatatatattaggttcgttcctaca 50905003  T
Q  534 caaaaatttct 544  Q
    ||| |||||||    
T  50905002 caagaatttct 50904992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 280 - 406
Target Start/End: Complemental strand, 48752657 - 48752532
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaactatcatttttacaaacaacaaatttaaa--tgacatgtcannnnnnnnctttcttttaaccataattggt 377  Q
    |||| ||||||||||| |||| ||||||||||||||| |||||||||||||||| |||  ||||| ||||         |||||||||| ||| ||||||    
T  48752657 gagaaattcttgtgtatgaacgaacctaactatcattcttacaaacaacaaattaaaacatgacacgtcattttat---tttcttttaatcatgattggt 48752561  T
Q  378 ggtggtgaatactaactgcaaataatggt 406  Q
    |||||||||||||||||||||||||||||    
T  48752560 ggtggtgaatactaactgcaaataatggt 48752532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 468 - 548
Target Start/End: Complemental strand, 28217606 - 28217527
Alignment:
Q  468 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctta 548  Q
    |||| |||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||  |||||||||||    
T  28217606 aaaaaaatgacgtgtcatgttttaatttgttgtttgtaagaatgata-attaggttcgttcctacacaggaatttctctta 28217527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 454 - 545
Target Start/End: Complemental strand, 10227803 - 10227712
Alignment:
Q  454 aattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 545  Q
    |||||||| |||| ||||||| ||||| ||||||||||||||||||||| |||| ||| ||  |||||||||||||||||||| ||||||||    
T  10227803 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatggtaggttaggttcgttcctacacaagaatttctc 10227712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 473 - 544
Target Start/End: Original strand, 50905104 - 50905175
Alignment:
Q  473 aatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttct 544  Q
    |||||||||||||||||||||||||||||| |||||||||||| |||| ||||||  |||||||||||||||    
T  50905104 aatgacgtatcatgttttaatttgttgtttgtaagaatgatatgttagattcgtttttacacaaaaatttct 50905175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 468 - 547
Target Start/End: Original strand, 7062184 - 7062262
Alignment:
Q  468 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctt 547  Q
    |||| |||||||| |||| |||||||||||||||| ||| |||||||  |||||||||||||||||||||||||||||||    
T  7062184 aaaaaaatgacgtgtcatattttaatttgttgtttgtaaaaatgatag-ttaggttcgttcctacacaaaaatttctctt 7062262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 468 - 547
Target Start/End: Original strand, 10227899 - 10227978
Alignment:
Q  468 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctt 547  Q
    |||| ||||| || ||||||||||||||||||||| |||| ||||||  |||||||||||||||||||| ||||||||||    
T  10227899 aaaataatgatgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 10227978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 454 - 545
Target Start/End: Original strand, 26552165 - 26552256
Alignment:
Q  454 aattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 545  Q
    |||||||| |||| ||||||| ||||| |||| |||||||||||||||| |||| ||||||  ||||||||| |||||||||| ||||||||    
T  26552165 aattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgatcctacacaagaatttctc 26552256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 468 - 541
Target Start/End: Complemental strand, 19059451 - 19059378
Alignment:
Q  468 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatt 541  Q
    ||||||| ||||| ||||||||||||||||||||| |||| ||||||  |||||||||||||||||||| ||||    
T  19059451 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatt 19059378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 473 - 545
Target Start/End: Original strand, 48752586 - 48752657
Alignment:
Q  473 aatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 545  Q
    |||||||| ||||||||||||||||||||| |||||||||||  |||||||||||| ||||||| ||||||||    
T  48752586 aatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcatacacaagaatttctc 48752657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 454 - 537
Target Start/End: Original strand, 19059551 - 19059634
Alignment:
Q  454 aattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaa 537  Q
    |||||||| |||| ||||||| || || |||| |||||||||||| |||||||| ||||||  |||||||||||||||||||||    
T  19059551 aattattttaaaagaaaacaacgatgtgtcatattttaatttgttctttataaggatgataggttaggttcgttcctacacaaa 19059634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 468 - 545
Target Start/End: Complemental strand, 48871323 - 48871247
Alignment:
Q  468 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 545  Q
    |||| ||||| || ||||||||||||||||| ||| |||||||||||  |||||||||||||||||||| ||||||||    
T  48871323 aaaaaaatgatgtgtcatgttttaatttgttatttgtaagaatgata-gttaggttcgttcctacacaagaatttctc 48871247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 468 - 545
Target Start/End: Original strand, 50893150 - 50893226
Alignment:
Q  468 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 545  Q
    |||| ||||| || ||||||||||||||||||||| ||| |||||||  |||||||||||||||||||| ||||||||    
T  50893150 aaaaaaatgatgtgtcatgttttaatttgttgtttgtaataatgata-gttaggttcgttcctacacaagaatttctc 50893226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 474 - 545
Target Start/End: Complemental strand, 42180641 - 42180571
Alignment:
Q  474 atgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 545  Q
    ||||||| ||||||||||||||||||||| ||| |||| ||  |||||||||||||||||||| ||||||||    
T  42180641 atgacgtgtcatgttttaatttgttgtttgtaataatgcta-gttaggttcgttcctacacaagaatttctc 42180571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 468 - 545
Target Start/End: Complemental strand, 4156968 - 4156892
Alignment:
Q  468 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 545  Q
    |||| |||||||| |||||||||||||| || ||| |||||||||||  |||||||| ||||||||||| ||||||||    
T  4156968 aaaaaaatgacgtgtcatgttttaatttattatttgtaagaatgata-gttaggttccttcctacacaagaatttctc 4156892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 468 - 536
Target Start/End: Original strand, 23346608 - 23346675
Alignment:
Q  468 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaa 536  Q
    |||| |||||| | |||||||||||||| |||||| |||||||||||  ||||||||||||||||||||    
T  23346608 aaaaaaatgacatgtcatgttttaatttattgtttgtaagaatgata-gttaggttcgttcctacacaa 23346675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 474 - 545
Target Start/End: Original strand, 41834069 - 41834139
Alignment:
Q  474 atgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 545  Q
    ||||||| ||||||||||||||||||||| ||| |||| ||  ||| |||||||||||||||| ||||||||    
T  41834069 atgacgtgtcatgttttaatttgttgtttgtaataatgcta-gttatgttcgttcctacacaagaatttctc 41834139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 280 - 333
Target Start/End: Complemental strand, 48871501 - 48871447
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaac-tatcatttttacaaacaacaaatt 333  Q
    |||| |||||||||||||||| |||||||| ||||||| ||||||||||||||||    
T  48871501 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaatt 48871447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 468 - 543
Target Start/End: Complemental strand, 26552067 - 26551992
Alignment:
Q  468 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttc 543  Q
    ||||||| |||||  ||| ||||||||| |||||| |||| ||||||  |||| ||||||||||||||| ||||||    
T  26552067 aaaacaacgacgtgccatattttaattttttgtttgtaaggatgataggttagattcgttcctacacaagaatttc 26551992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 280 - 333
Target Start/End: Complemental strand, 10227976 - 10227922
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaa-ctatcatttttacaaacaacaaatt 333  Q
    |||| |||||||||||||||| ||||||| |||||||  ||||||||||||||||    
T  10227976 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaatt 10227922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 280 - 333
Target Start/End: Original strand, 23346419 - 23346473
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaac-tatcatttttacaaacaacaaatt 333  Q
    |||| |||||||||||||||| |||||||| ||||||| |||||||||| |||||    
T  23346419 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaataaatt 23346473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 468 - 514
Target Start/End: Complemental strand, 39669133 - 39669087
Alignment:
Q  468 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgata 514  Q
    |||| ||||||||||||| ||||||||| |||||| |||||||||||    
T  39669133 aaaaaaatgacgtatcatattttaatttattgtttgtaagaatgata 39669087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 333
Target Start/End: Original strand, 19059379 - 19059428
Alignment:
Q  285 attcttgtgtaggaactaacctaa-ctatcatttttacaaacaacaaatt 333  Q
    |||||||||||||||| ||||||| |||||||  ||||||||||||||||    
T  19059379 attcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaatt 19059428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 332
Target Start/End: Complemental strand, 28217783 - 28217730
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaac-tatcatttttacaaacaacaaat 332  Q
    |||| ||| |||||||||||| |||||||| ||||||| |||||||||||||||    
T  28217783 gagaaattattgtgtaggaacgaacctaacatatcattcttacaaacaacaaat 28217730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 147; Significance: 4e-77; HSPs: 46)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 280 - 547
Target Start/End: Original strand, 5146504 - 5146769
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaactatcatttttacaaacaacaaatttaaa--tgacatgtcannnnnnnnctttcttttaaccataattggt 377  Q
    |||| ||| |||||||||||| ||||||||||||||| |||||||||| ||||| |||  ||||| || |         |||||||||||||| ||||||    
T  5146504 gagaaattattgtgtaggaacgaacctaactatcattcttacaaacaataaattaaaacatgacacgttattttt----tttcttttaaccatgattggt 5146599  T
Q  378 ggtggtgaatactaactgcaaataatggttgagagagaggaggagcatttattcttcctttcttaaatcatttccaaattatttaaaaataaaacaatga 477  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||| |||||||||| |||||| |||||||| |||||||||||||||    
T  5146600 ggtggtgaatactaactgcaaataatggttgagagagaggaggaggagttatttttcatttcttaaattatttcctaattattttaaaataaaacaatga 5146699  T
Q  478 cgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctt 547  Q
    ||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||    
T  5146700 cgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtttctacacaagaatttctctt 5146769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 280 - 547
Target Start/End: Original strand, 35454451 - 35454715
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaactatcatttttacaaacaacaaatttaaa--tgacatgtcannnnnnnnctttcttttaaccataattggt 377  Q
    |||| ||||||||||| |||| ||||||||||||||| |||||||||||||||| |||  ||||| ||||         |||||||||||||| ||||||    
T  35454451 gagaaattcttgtgtatgaacgaacctaactatcattcttacaaacaacaaattaaaacatgacacgtcattttt----tttcttttaaccatgattggt 35454546  T
Q  378 ggtggtgaatactaactgcaaataatggttgagagagaggaggagcatttattcttcctttcttaaatcatttccaaattatttaaaaataaaacaatga 477  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||| |||||||||| |||||||||||||||  || |||||||||||    
T  35454547 ggtggtgaatactaactgcaaataatggttgagagagaggacgagcagttatttttcatttcttaaattatttccaaattatttttaactaaaacaatga 35454646  T
Q  478 cgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctt 547  Q
    ||| ||||||||||||||||||||| |||||||||||  |||||||||||||||||||| ||||| ||||    
T  35454647 cgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttttctt 35454715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 280 - 545
Target Start/End: Complemental strand, 6518466 - 6518203
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaactatcatttttacaaacaacaaatttaaatgacatgtcannnnnnnnctttc-ttttaaccataattggtg 378  Q
    |||| |||||||||||| ||| ||||||||||||||| |||||||||||||||| ||||   |||  |         |||| |||||||||| |||||||    
T  6518466 gagaaattcttgtgtagtaacgaacctaactatcattcttacaaacaacaaattaaaat---atgatacatcatttttttccttttaaccatgattggtg 6518370  T
Q  379 gtggtgaatactaactgcaaataatggttgagagagaggaggagcatttattcttcctttcttaaatcatttccaaattatttaaaaataaaacaatgac 478  Q
    ||||||||||||||| ||||||||||||||||||||||||||| || ||||| ||| |||||||||| ||||||||||||||| ||||||||||||||||    
T  6518369 gtggtgaatactaacggcaaataatggttgagagagaggaggaacaattatttttcatttcttaaattatttccaaattattttaaaataaaacaatgac 6518270  T
Q  479 gtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 545  Q
     |   ||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||    
T  6518269 atgcaatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 6518203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 357 - 545
Target Start/End: Original strand, 33377722 - 33377912
Alignment:
Q  357 tttcttttaaccataattggtggtggtgaatactaactgcaaataatggttgagagagaggag--gagcatttattcttcctttcttaaatcatttccaa 454  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||| ||  |||||||||| |||||| |    
T  33377722 tttcttttaaccatgattggtggtggtgaatactaactgcaaataatggttgagagagaggagaggagcagttattttttatttcttaaattatttccta 33377821  T
Q  455 attatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 545  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||| || ||||||||    
T  33377822 attattttaaaataaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacataagaatttctc 33377912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 357 - 545
Target Start/End: Original strand, 13823224 - 13823412
Alignment:
Q  357 tttcttttaaccataattggtggtggtgaatactaactgcaaataatggttgagagagaggaggagcatttattcttcctttcttaaatcatttccaaat 456  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||| ||| |||||||||| |||||| |||    
T  13823224 tttcttttaaccatgattggtggtggtgaatactaagtgcaaataatggttgagaaagaggaggagcaattatttttcatttcttaaattatttcctaat 13823323  T
Q  457 tatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 545  Q
    ||||| |||||||||||||||||| ||||||||||||||||| ||| ||| |||||||| ||| |||||||||||||||| ||||||||    
T  13823324 tattttaaaataaaacaatgacgtgtcatgttttaatttgttatttgtaaaaatgatatgttaagttcgttcctacacaagaatttctc 13823412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 373 - 545
Target Start/End: Complemental strand, 228889 - 228717
Alignment:
Q  373 ttggtggtggtgaatactaactgcaaataatggttgagagagaggaggagcatttattcttcctttcttaaatcatttccaaattatttaaaaataaaac 472  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||| | ||| |||||||||| |||||| |||||||| ||||||||||    
T  228889 ttggtggtggtgaataccaaccgcaaataatggttgagagagaggaggagcagttagttttcatttcttaaattatttcctaattattttaaaataaaac 228790  T
Q  473 aatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 545  Q
    ||| |||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||  ||||||||    
T  228789 aataacgtgtcatgttttaatttattgtttataagaatgatatgttaggttcgttcctacacagtaatttctc 228717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 289 - 445
Target Start/End: Original strand, 19897234 - 19897390
Alignment:
Q  289 ttgtgtaggaactaacctaactatcatttttacaaacaacaaatttaaa--tgacatgtcannnnnnnnctttcttttaaccataattggtggtggtgaa 386  Q
    |||||||||||| ||||||||||||||| |||||||||||||||| |||  ||||| ||||        ||  ||||||||||| |||||||||||||||    
T  19897234 ttgtgtaggaacgaacctaactatcattcttacaaacaacaaattaaaacatgacacgtcatattttttct--cttttaaccatgattggtggtggtgaa 19897331  T
Q  387 tactaactgcaaataatggttgagagagaggaggagcatttattcttcctttcttaaat 445  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||    
T  19897332 tactaactgcaaataatggttgagagagaggaggaacatttatttttcatttcttaaat 19897390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 365 - 528
Target Start/End: Original strand, 40881905 - 40882066
Alignment:
Q  365 aaccataattggtggtggtgaatactaactgcaaataatggttgagagagaggaggagcatttattcttcctttcttaaatcatttccaaattatttaaa 464  Q
    |||||| ||||||||||| |||||||||| | || ||||||||||||||||  ||||| | || || | | |||||||||| ||||||||||||||| ||    
T  40881905 aaccattattggtggtggcgaatactaaccgtaagtaatggttgagagaga--aggagtagttgttttccatttcttaaattatttccaaattattttaa 40882002  T
Q  465 aataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttc 528  Q
    ||||||||||| |||| |||| |||||||||||||||| |||||||||||| |||| |||||||    
T  40882003 aataaaacaataacgtgtcatattttaatttgttgtttgtaagaatgatatgttagattcgttc 40882066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 436 - 547
Target Start/End: Complemental strand, 8489232 - 8489121
Alignment:
Q  436 tttcttaaatcatttccaaattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacaca 535  Q
    |||||||||| ||||||||||||||| |||||||||||||||||| |||| |||||||||||||||| |||||||||||| |||| || |||||||||||    
T  8489232 tttcttaaattatttccaaattattttaaaataaaacaatgacgtgtcatattttaatttgttgtttgtaagaatgatatgttagatttgttcctacaca 8489133  T
Q  536 aaaatttctctt 547  Q
    | ||||||||||    
T  8489132 agaatttctctt 8489121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 357 - 530
Target Start/End: Original strand, 27319555 - 27319716
Alignment:
Q  357 tttcttttaaccataattggtggtggtgaatactaactgcaaataatggttgagagagaggaggagcatttattcttcctttcttaaatcatttccaaat 456  Q
    |||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||| |||| ||||| ||| |||||||||                
T  27319555 tttcttttaaccatgattggtggtggtgaatcctagctgcaaataatggttgagagagaggagaagcaattatttttcatttcttaaa------------ 27319642  T
Q  457 tatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcct 530  Q
    ||||| ||||||||||||||| || |||| |||||||||||||||| |||||||||||| |||| || ||||||    
T  27319643 tattttaaaataaaacaatgatgtttcatattttaatttgttgtttgtaagaatgatatgttagattggttcct 27319716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 453 - 545
Target Start/End: Original strand, 19898926 - 19899018
Alignment:
Q  453 aaattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 545  Q
    ||||||||| |||||||||||||||| | ||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||    
T  19898926 aaattattttaaaataaaacaatgacatgtcatgttttaatttgttgtttataaaaatgatatgttaggttcgttcctacacaagaatttctc 19899018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 436 - 545
Target Start/End: Complemental strand, 40881899 - 40881792
Alignment:
Q  436 tttcttaaatcatttccaaattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacaca 535  Q
    |||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||| |||||| |||||||   || |||||||||||||||||||    
T  40881899 tttcttaaattatttccaaattattttaaaataaaacaatgacgtgtcatgttttaatttattgtttgtaagaat--aatgttaggttcgttcctacaca 40881802  T
Q  536 aaaatttctc 545  Q
    | ||||||||    
T  40881801 acaatttctc 40881792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 454 - 543
Target Start/End: Original strand, 8323881 - 8323970
Alignment:
Q  454 aattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttc 543  Q
    |||||||| |||| ||||||| ||||| ||||||||||||||||||||| |||| ||||||| |||||||||||||||||||| ||||||    
T  8323881 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttc 8323970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 454 - 547
Target Start/End: Original strand, 26534671 - 26534764
Alignment:
Q  454 aattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctt 547  Q
    |||||||| |||| ||||||| ||||| ||||||||||||||||||||| |||| ||||||  |||||||||||||||||||| ||||||||||    
T  26534671 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 26534764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 356 - 424
Target Start/End: Complemental strand, 228959 - 228891
Alignment:
Q  356 ctttcttttaaccataattggtggtggtgaatactaactgcaaataatggttgagagagaggaggagca 424  Q
    ||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  228959 ctttcttttaaccatgattggtggtggtgaataccaaccgcaaataatggttgagagagaggaggagca 228891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 454 - 545
Target Start/End: Complemental strand, 791683 - 791592
Alignment:
Q  454 aattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 545  Q
    |||||||| |||| ||||||| ||||| ||||||||||||||||||||| |||| ||| ||  |||||||||||||||||||||||||||||    
T  791683 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatggtaggttaggttcgttcctacacaaaaatttctc 791592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 477 - 547
Target Start/End: Complemental strand, 14069928 - 14069859
Alignment:
Q  477 acgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctt 547  Q
    |||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||    
T  14069928 acgtgtcatgttttaatttgttgtttataagaatgata-gttaggttcgttcctacacaagaatttctctt 14069859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 468 - 545
Target Start/End: Complemental strand, 26534583 - 26534506
Alignment:
Q  468 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 545  Q
    ||||||| ||||| ||||||||||||||||||||| ||||  |||||  |||||||||||||||||||| ||||||||    
T  26534583 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggttgataggttaggttcgttcctacacaagaatttctc 26534506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 468 - 545
Target Start/End: Complemental strand, 35454527 - 35454451
Alignment:
Q  468 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 545  Q
    |||| |||||||| ||||||||||||||||||||| |||||||||||  |||||||||||| ||||||| ||||||||    
T  35454527 aaaaaaatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcatacacaagaatttctc 35454451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 473 - 545
Target Start/End: Original strand, 14388512 - 14388583
Alignment:
Q  473 aatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 545  Q
    |||||||| ||||||||||||||||||||| |||||||||||  ||||||| |||||||||||| ||||||||    
T  14388512 aatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggtttgttcctacacaagaatttctc 14388583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 474 - 542
Target Start/End: Complemental strand, 19897295 - 19897228
Alignment:
Q  474 atgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaattt 542  Q
    ||||||| ||||||||||||||||||||| |||||||||||  |||||||||||||||||||| |||||    
T  19897295 atgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaataattt 19897228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 454 - 545
Target Start/End: Original strand, 130421 - 130512
Alignment:
Q  454 aattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 545  Q
    |||||||| |||| ||||||| ||||| | ||||||||||||||||||| |||| ||||||  ||||||||||| ||||| || ||||||||    
T  130421 aattattttaaaagaaaacaacgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttactacaaaagaatttctc 130512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 468 - 547
Target Start/End: Original strand, 6518390 - 6518468
Alignment:
Q  468 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctt 547  Q
    |||| ||||| ||||||| |||||||||||||||| |||||||||||  ||||||||||| |||||||| ||||||||||    
T  6518390 aaaaaaatgatgtatcatattttaatttgttgtttgtaagaatgata-gttaggttcgttactacacaagaatttctctt 6518468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 468 - 546
Target Start/End: Complemental strand, 130331 - 130253
Alignment:
Q  468 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctct 546  Q
    ||||||| ||||| ||||||||||||||||||||| ||||  ||| |  |||||||||||||||||||| |||||||||    
T  130331 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggttgacaggttaggttcgttcctacacaagaatttctct 130253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 468 - 545
Target Start/End: Complemental strand, 5146580 - 5146504
Alignment:
Q  468 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 545  Q
    |||| ||| |||| |||||||||||||| |||||| |||||||||||  |||||||||||||||||||| ||||||||    
T  5146580 aaaaaaataacgtgtcatgttttaatttattgtttgtaagaatgata-gttaggttcgttcctacacaataatttctc 5146504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 468 - 545
Target Start/End: Complemental strand, 8323784 - 8323707
Alignment:
Q  468 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 545  Q
    ||||||| ||||| |||||||||||||| |||||| |||  ||||||  |||||||||||||||||||| ||||||||    
T  8323784 aaaacaacgacgtgtcatgttttaatttattgtttgtaaagatgataggttaggttcgttcctacacaagaatttctc 8323707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 280 - 333
Target Start/End: Complemental strand, 14388583 - 14388530
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaactatcatttttacaaacaacaaatt 333  Q
    |||| |||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  14388583 gagaaattcttgtgtaggaacaaacctaactatcattcttacaaacaacaaatt 14388530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 468 - 545
Target Start/End: Complemental strand, 42630788 - 42630711
Alignment:
Q  468 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 545  Q
    |||||||||| || |||||||||| |||||||||| |||| ||||||  |||||||||||| ||||||| ||||||||    
T  42630788 aaaacaatgaagtgtcatgttttagtttgttgtttgtaaggatgataggttaggttcgttcatacacaagaatttctc 42630711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 285 - 333
Target Start/End: Complemental strand, 35454708 - 35454660
Alignment:
Q  285 attcttgtgtaggaactaacctaactatcatttttacaaacaacaaatt 333  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  35454708 attcttgtgtaggaacgaacctaactatcattcttacaaacaacaaatt 35454660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 477 - 548
Target Start/End: Complemental strand, 13823217 - 13823147
Alignment:
Q  477 acgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctta 548  Q
    |||| |||||||||| ||| ||||||||| ||||||||  |||||||||||||||||||| |||||||||||    
T  13823217 acgtgtcatgttttagtttattgtttatacgaatgatag-ttaggttcgttcctacacaagaatttctctta 13823147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 280 - 333
Target Start/End: Original strand, 14069861 - 14069914
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaactatcatttttacaaacaacaaatt 333  Q
    |||| |||||||||||||||| ||||||||||||||| ||| ||||||||||||    
T  14069861 gagaaattcttgtgtaggaacgaacctaactatcattcttataaacaacaaatt 14069914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 280 - 347
Target Start/End: Complemental strand, 19899018 - 19898948
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaac-tatcatttttacaaacaacaaatttaa--atgacatgtca 347  Q
    |||| |||||||||||||||| |||||||| ||||||||||| |||||||||||| ||  |||||||||||    
T  19899018 gagaaattcttgtgtaggaacgaacctaacatatcatttttataaacaacaaattaaaacatgacatgtca 19898948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 484 - 542
Target Start/End: Original strand, 228987 - 229044
Alignment:
Q  484 atgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaattt 542  Q
    ||||||||||||||||||| |||||||||||  ||| ||||||| ||||||||||||||    
T  228987 atgttttaatttgttgtttgtaagaatgata-gttatgttcgtttctacacaaaaattt 229044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 280 - 333
Target Start/End: Complemental strand, 791867 - 791813
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaa-ctatcatttttacaaacaacaaatt 333  Q
    |||| |||||||||||||||| ||||||| ||||||| |||||||||||||||||    
T  791867 gagaaattcttgtgtaggaacgaacctaacctatcatctttacaaacaacaaatt 791813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 280 - 333
Target Start/End: Original strand, 6518203 - 6518257
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaac-tatcatttttacaaacaacaaatt 333  Q
    |||| |||||||||||||||| |||||||| ||||||| ||||||||||||||||    
T  6518203 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaatt 6518257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 488 - 545
Target Start/End: Original strand, 791810 - 791867
Alignment:
Q  488 tttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 545  Q
    ||||||||||||||| |||  ||||||  |||||||||||||||||||| ||||||||    
T  791810 tttaatttgttgtttgtaaagatgataggttaggttcgttcctacacaagaatttctc 791867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 280 - 338
Target Start/End: Original strand, 8489123 - 8489182
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaac-tatcatttttacaaacaacaaatttaaat 338  Q
    |||| |||||||||||||||| || ||||| ||||||| |||||||||||||||| ||||    
T  8489123 gagaaattcttgtgtaggaacaaatctaacatatcattcttacaaacaacaaattaaaat 8489182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 280 - 333
Target Start/End: Original strand, 8323707 - 8323761
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaa-ctatcatttttacaaacaacaaatt 333  Q
    |||| |||||||||||||||| ||||||| ||||||| ||||||||||| |||||    
T  8323707 gagaaattcttgtgtaggaacgaacctaacctatcatctttacaaacaataaatt 8323761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 280 - 333
Target Start/End: Complemental strand, 13823412 - 13823358
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaac-tatcatttttacaaacaacaaatt 333  Q
    |||| |||||||||||||||| ||| |||| ||||||||||||||| ||||||||    
T  13823412 gagaaattcttgtgtaggaacgaacttaacatatcatttttacaaataacaaatt 13823358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 280 - 333
Target Start/End: Complemental strand, 26534762 - 26534708
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaa-ctatcatttttacaaacaacaaatt 333  Q
    |||| |||||||||||||||| ||||||| |||||||  ||||||||||||||||    
T  26534762 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaatt 26534708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 280 - 333
Target Start/End: Complemental strand, 33377912 - 33377858
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaac-tatcatttttacaaacaacaaatt 333  Q
    |||| |||||| ||||||||| |||||||| ||||||| ||||||||||||||||    
T  33377912 gagaaattcttatgtaggaacgaacctaacatatcattcttacaaacaacaaatt 33377858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 333
Target Start/End: Complemental strand, 8323967 - 8323918
Alignment:
Q  285 attcttgtgtaggaactaacctaac-tatcatttttacaaacaacaaatt 333  Q
    |||||||||||||||| |||||||| ||||||  ||||||||||||||||    
T  8323967 attcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaatt 8323918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 333
Target Start/End: Original strand, 26534503 - 26534560
Alignment:
Q  277 cacgagagattcttgtgtaggaactaacctaa-ctatcatttttacaaacaacaaatt 333  Q
    ||||||| |||||||||||||||| ||||||| ||||||   ||||||||||||||||    
T  26534503 cacgagaaattcttgtgtaggaacgaacctaacctatcaaccttacaaacaacaaatt 26534560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 477 - 542
Target Start/End: Complemental strand, 27319546 - 27319482
Alignment:
Q  477 acgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaattt 542  Q
    ||||||||||||||||||| || ||| |||||||||||  ||| |||| || ||||||||||||||    
T  27319546 acgtatcatgttttaatttattatttgtaagaatgata-gttaagttcattactacacaaaaattt 27319482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #45
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 289 - 333
Target Start/End: Complemental strand, 229038 - 228994
Alignment:
Q  289 ttgtgtaggaactaacctaactatcatttttacaaacaacaaatt 333  Q
    |||||||| ||| ||| ||||||||||| ||||||||||||||||    
T  229038 ttgtgtagaaacgaacataactatcattcttacaaacaacaaatt 228994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #46
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 280 - 316
Target Start/End: Original strand, 13823150 - 13823186
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaactatcatt 316  Q
    |||| |||||||||||||||| |||||||||||||||    
T  13823150 gagaaattcttgtgtaggaacgaacctaactatcatt 13823186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 145; Significance: 6e-76; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 280 - 545
Target Start/End: Original strand, 2814243 - 2814508
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaactatcatttttacaaacaacaaatttaa--atgacatgtcannnnnnnnctttcttttaaccataattggt 377  Q
    |||| |||||||||||||||| ||||||||||||||| |||||||||||||||| ||  |||||| |||          |||||||||||||| ||||||    
T  2814243 gagaaattcttgtgtaggaacgaacctaactatcattcttacaaacaacaaattaaatcatgacacgtcgttttttt--tttcttttaaccatgattggt 2814340  T
Q  378 ggtggtgaatactaactgcaaataatggttgagagagaggaggagcatttattcttcctttcttaaatcatttccaaattatttaaaaataaaacaatga 477  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||| |||||||||| |||||| ||||||||  ||| ||||||||||    
T  2814341 ggtggtgaatactaaccgcaaataatggttgagagagaggaggagcaattatttttcatttcttaaattatttcctaattatttttaaaaaaaacaatga 2814440  T
Q  478 cgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 545  Q
    ||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||    
T  2814441 cgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 2814508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 280 - 547
Target Start/End: Complemental strand, 14193588 - 14193322
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaactatcatttttacaaacaacaaatttaaa--tgacatgtcannnnnnnnctttcttttaaccataattggt 377  Q
    |||| |||||||||||||||| ||||||||||||||| |||||||||||||||| |||  ||||| ||||          ||||||||||||| ||||||    
T  14193588 gagaaattcttgtgtaggaacgaacctaactatcattcttacaaacaacaaattaaaacatgacacgtcatttttttc--ttcttttaaccatgattggt 14193491  T
Q  378 ggtggtgaatactaactgcaaataatggttgagagagaggaggagcatttattcttcctttcttaaatcatttccaaattatttaaaaataaaacaatga 477  Q
    |||||||||||||||||||||||||||||||||||||||||||| || ||||| ||| |||||||||| ||||||||||||||| |||||||||||||||    
T  14193490 ggtggtgaatactaactgcaaataatggttgagagagaggaggaacaattatttttcatttcttaaattatttccaaattattttaaaataaaacaatga 14193391  T
Q  478 cgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctt 547  Q
     || ||||||||||||||||||||| ||| ||| |||| ||||||||||||||| |||||||||||||||    
T  14193390 tgtgtcatgttttaatttgttgtttgtaaaaataatatgttaggttcgttccta-acaaaaatttctctt 14193322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 280 - 546
Target Start/End: Complemental strand, 41540034 - 41539769
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaactatcatttttacaaacaacaaatttaaa--tgacatgtcannnnnnnnctttcttttaaccataattggt 377  Q
    |||| |||||||||||||||| ||||||||||||||| |||||||||||||||| |||  ||||| |||          |||||||||| ||| ||||||    
T  41540034 gagaaattcttgtgtaggaacgaacctaactatcattcttacaaacaacaaattaaaacatgacacgtcgttttat---tttcttttaatcatgattggt 41539938  T
Q  378 ggtggtgaatactaactgcaaataatggttgagagagaggaggagcatttattcttcctttcttaaatcatttccaaattatttaaaaataaaacaatga 477  Q
    ||||||||||||||||||||||||||||||||||||||| |||| || ||||| ||| |||||||||| ||||| ||||||||| |||||||||||| ||    
T  41539937 ggtggtgaatactaactgcaaataatggttgagagagagaaggaacagttatttttcatttcttaaattatttcaaaattattttaaaataaaacaacga 41539838  T
Q  478 cgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctct 546  Q
    ||| |||| |||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||    
T  41539837 cgtgtcatattttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctct 41539769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 357 - 548
Target Start/End: Original strand, 397083 - 397272
Alignment:
Q  357 tttcttttaaccataattggtggtggtgaatactaactgcaaataatggttgagagagaggaggagcatttattcttcctttcttaaatcatttccaaat 456  Q
    |||||||||||||| |||||||||||||||||||||| |||||||||||||||||  ||||||||||| ||||| ||| |||||||||| |||||| |||    
T  397083 tttcttttaaccatgattggtggtggtgaatactaaccgcaaataatggttgaga--gaggaggagcagttatttttcatttcttaaattatttcctaat 397180  T
Q  457 tatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctta 548  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||    
T  397181 tattttaaaataaaacaatgacgtgtcatgttttaatttgttgtttataagaatgatatgttaggttcgtttctacacaagaatttctctta 397272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 454 - 545
Target Start/End: Original strand, 37994881 - 37994972
Alignment:
Q  454 aattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 545  Q
    |||||||| |||| ||||||| ||||| |||||||||||||| |||||| |||| ||||||  |||||||||||||||||||| ||||||||    
T  37994881 aattattttaaaagaaaacaacgacgtgtcatgttttaatttattgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 37994972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 468 - 545
Target Start/End: Original strand, 14193512 - 14193588
Alignment:
Q  468 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 545  Q
    |||| |||||||| ||||||||||||||||||||| |||||||||||  |||||||||||||||||||| ||||||||    
T  14193512 aaaaaaatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctc 14193588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 468 - 545
Target Start/End: Complemental strand, 37994785 - 37994708
Alignment:
Q  468 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 545  Q
    ||||||| |||||||||||||||||||| |||||| |||| ||||||  |||||||||||||||||||| ||||||||    
T  37994785 aaaacaacgacgtatcatgttttaatttattgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 37994708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 476 - 547
Target Start/End: Original strand, 41539966 - 41540036
Alignment:
Q  476 gacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctt 547  Q
    ||||| ||||||||||||||||||||| |||||||||||  |||||||||||||||||||| ||||||||||    
T  41539966 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctctt 41540036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 476 - 547
Target Start/End: Complemental strand, 2814311 - 2814241
Alignment:
Q  476 gacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctt 547  Q
    ||||| ||||| ||||||||||||||| |||||||||||  |||||||||||||||||||| ||||||||||    
T  2814311 gacgtgtcatgatttaatttgttgtttgtaagaatgatag-ttaggttcgttcctacacaagaatttctctt 2814241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 480 - 545
Target Start/End: Original strand, 40587989 - 40588054
Alignment:
Q  480 tatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 545  Q
    ||||||||||||||||||| ||||||| ||||||||||||  ||||||||||||| | ||||||||    
T  40587989 tatcatgttttaatttgttatttataaaaatgatatattaaattcgttcctacaccagaatttctc 40588054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 468 - 547
Target Start/End: Complemental strand, 44036891 - 44036812
Alignment:
Q  468 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctt 547  Q
    ||||||| ||||| |||||||| |||||||||||| |||| ||||||  |||||||||| ||||||||  ||||||||||    
T  44036891 aaaacaacgacgtgtcatgtttgaatttgttgtttgtaaggatgataggttaggttcgtccctacacatgaatttctctt 44036812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 280 - 338
Target Start/End: Original strand, 41539770 - 41539829
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaac-tatcatttttacaaacaacaaatttaaat 338  Q
    |||| |||||||||||||||| |||||||| ||||||| |||||||||||||||| ||||    
T  41539770 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaat 41539829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 280 - 333
Target Start/End: Complemental strand, 2814508 - 2814454
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaac-tatcatttttacaaacaacaaatt 333  Q
    |||| |||||||||||||||| |||||||| ||||||| ||||||||||||||||    
T  2814508 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaatt 2814454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 484 - 545
Target Start/End: Complemental strand, 397067 - 397007
Alignment:
Q  484 atgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 545  Q
    |||||||||||| |||||| |||||||||||  |||||||||||||| ||||| ||||||||    
T  397067 atgttttaatttattgtttgtaagaatgata-gttaggttcgttcctgcacaagaatttctc 397007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 280 - 333
Target Start/End: Original strand, 397007 - 397060
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaactatcatttttacaaacaacaaatt 333  Q
    |||| ||||||||| |||||| ||||||||||||||| |||||||||| |||||    
T  397007 gagaaattcttgtgcaggaacgaacctaactatcattcttacaaacaataaatt 397060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 366 - 413
Target Start/End: Complemental strand, 40586305 - 40586258
Alignment:
Q  366 accataattggtggtggtgaatactaactgcaaataatggttgagaga 413  Q
    |||||||||||||||||||||| ||||| | |||||||| ||||||||    
T  40586305 accataattggtggtggtgaatgctaacggtaaataatgattgagaga 40586258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 141; Significance: 1e-73; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 280 - 545
Target Start/End: Original strand, 40521016 - 40521280
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaactatcatttttacaaacaacaaatttaaat--gacatgtcannnnnnnnctttcttttaaccataattggt 377  Q
    |||| |||||||||||||||| ||||||||||||||| |||||||||||||||| ||||  |||| ||||         |||||||||||||| ||||||    
T  40521016 gagaaattcttgtgtaggaacgaacctaactatcattcttacaaacaacaaattaaaatatgacacgtcataatttt--tttcttttaaccatgattggt 40521113  T
Q  378 ggtggtgaatactaactgcaaataatggttgagagagaggaggagcatttattcttcctttcttaaatcatttccaaattatttaaaaataaaacaatga 477  Q
     ||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||| ||| |||||| |||||| |||||||| |||||||||||||||    
T  40521114 agtggtgaatactaaccgcaaataatggttgagagagaggaggagcagttatt-ttcatttattaaattatttcctaattattttaaaataaaacaatga 40521212  T
Q  478 cgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 545  Q
     || ||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||    
T  40521213 tgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 40521280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 280 - 545
Target Start/End: Complemental strand, 7298900 - 7298635
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaactatcatttttacaaacaacaaatttaaa--tgacatgtcannnnnnnnctttcttttaaccataattggt 377  Q
    |||| |||||||||||||||| ||||||||||||||| |||||||||||||||| |||  | ||| ||           |||||||||||||| ||||||    
T  7298900 gagaaattcttgtgtaggaacgaacctaactatcattcttacaaacaacaaattaaaacataacacgt--atttttttttttcttttaaccatgattggt 7298803  T
Q  378 ggtggtgaatactaactgcaaataatggttgagagagaggaggagcatttattcttcctttcttaaatcatttccaaattatttaaaaataaaacaatga 477  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||| ||||| ||| |||||||||| |||| | |||||||| |||||||||||||||    
T  7298802 ggtggtgaatactaagtgcaaataatggttgagaaagaggaggagcagttatttttcatttcttaaattattttctaattattttaaaataaaacaatga 7298703  T
Q  478 cgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 545  Q
    ||| ||||||||||||||||||||| ||| |||||||| |||||||||||||||||||| ||||||||    
T  7298702 cgtgtcatgttttaatttgttgtttgtaaaaatgatatgttaggttcgttcctacacaagaatttctc 7298635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 285 - 515
Target Start/End: Original strand, 46567962 - 46568192
Alignment:
Q  285 attcttgtgtaggaactaacctaactatcatttttacaaacaacaaatttaaa--tgacatgtcannnnnnnnctttcttttaaccataattggtggtgg 382  Q
    |||||||||||||||| ||| ||||||||||| |||||||||||||||| |||  ||||| ||||         ||||||||||| || ||||||||| |    
T  46567962 attcttgtgtaggaacgaacttaactatcattcttacaaacaacaaattaaaacatgacacgtcattttatt--tttcttttaactatgattggtggtag 46568059  T
Q  383 tgaatactaactgcaaataatggttgagagagaggaggagcatttattcttcctttcttaaatcatttccaaattatttaaaaataaaacaatgacgtat 482  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||||| ||| ||| |||||| |||||| ||||||||  |||||||||||||| || |    
T  46568060 tgaatactaactgcagataatggttgagagagaggaggagcagttatttttcatttattaaattatttcctaattatttttaaataaaacaatgatgtgt 46568159  T
Q  483 catgttttaatttgttgtttataagaatgatat 515  Q
    |||||||||||||||||||| ||||||||||||    
T  46568160 catgttttaatttgttgtttgtaagaatgatat 46568192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 280 - 469
Target Start/End: Complemental strand, 16979681 - 16979492
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaactatcatttttacaaacaacaaatttaaa--tgacatgtcannnnnnnnctttcttttaaccataattggt 377  Q
    |||| |||||||||||||||| || |||||||||||| ||||||| |||||||| |||  ||||| ||||         |||||||||||||||||||||    
T  16979681 gagaaattcttgtgtaggaacgaatctaactatcattcttacaaataacaaattaaaacatgacacgtcattttttt--tttcttttaaccataattggt 16979584  T
Q  378 ggtggtgaatactaactgcaaataatggttgagagagaggaggagcatttattcttcctttcttaaatcatttccaaattatttaaaaataa 469  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||| |||||||||| ||||||||||||||| |||||||    
T  16979583 ggtggtgaatactaactgcagataatggttgagagagaggaggagcagttatttttcatttcttaaattatttccaaattattttaaaataa 16979492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 280 - 452
Target Start/End: Complemental strand, 28949069 - 28948893
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaactatcatttttacaaacaacaaatttaaa--tgacatgtcannnnnnnnctttcttttaaccataattggt 377  Q
    |||| ||| |||||||||||| ||||||||||||||| |||||||||| ||||| |||  ||||| ||||        ||||||||||||||| ||||||    
T  28949069 gagaaatttttgtgtaggaacgaacctaactatcattcttacaaacaataaattaaaacatgacacgtcattttttttctttcttttaaccatgattggt 28948970  T
Q  378 ggtggtgaatactaactgcaaataatggtt--gagagagaggaggagcatttattcttcctttcttaaatcatttcc 452  Q
    |||||||||||||||| |||||||||||||  ||||||||||||||||| ||||| ||| |||||||||| ||||||    
T  28948969 ggtggtgaatactaaccgcaaataatggttcagagagagaggaggagcagttatttttcatttcttaaattatttcc 28948893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 357 - 456
Target Start/End: Original strand, 47478433 - 47478532
Alignment:
Q  357 tttcttttaaccataattggtggtggtgaatactaactgcaaataatggttgagagagaggaggagcatttattcttcctttcttaaatcatttccaaat 456  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||| ||||||||||    
T  47478433 tttcttttaaccatgattgatggtggtgaatactaactgcaaataatggttgagagagaggaggagcaattatttttcatttcttaaattatttccaaat 47478532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 454 - 547
Target Start/End: Original strand, 19805587 - 19805680
Alignment:
Q  454 aattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctt 547  Q
    |||||||| |||| ||| ||| ||||| ||||||||||||||||| |||||||| ||||||  ||| |||||||||||||||| ||||||||||    
T  19805587 aattattttaaaagaaagcaacgacgtgtcatgttttaatttgttatttataaggatgataggttaagttcgttcctacacaagaatttctctt 19805680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 468 - 545
Target Start/End: Original strand, 28948993 - 28949069
Alignment:
Q  468 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 545  Q
    |||| |||||||| |||||||||||||| |||||| |||||||||||  |||||||||||||||||||||||||||||    
T  28948993 aaaaaaatgacgtgtcatgttttaatttattgtttgtaagaatgata-gttaggttcgttcctacacaaaaatttctc 28949069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 474 - 547
Target Start/End: Complemental strand, 40521086 - 40521014
Alignment:
Q  474 atgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctt 547  Q
    ||||||| |||| |||||||||||||||| |||||||||||  |||||||||||||||||||| ||||||||||    
T  40521086 atgacgtgtcatattttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctctt 40521014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 484 - 547
Target Start/End: Original strand, 7298840 - 7298902
Alignment:
Q  484 atgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctt 547  Q
    ||||||||||||||||||| |||||||||||  |||||||||||||||||||| ||||||||||    
T  7298840 atgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctctt 7298902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 468 - 545
Target Start/End: Original strand, 16979605 - 16979681
Alignment:
Q  468 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 545  Q
    |||| |||||||| ||||||||||||||||| ||| |||||||||||  |||| ||||||||||||||| ||||||||    
T  16979605 aaaaaaatgacgtgtcatgttttaatttgttatttgtaagaatgata-gttagattcgttcctacacaagaatttctc 16979681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 473 - 542
Target Start/End: Complemental strand, 46568028 - 46567960
Alignment:
Q  473 aatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaattt 542  Q
    |||||||| ||||||||||||||||||||| |||||||||||  ||| |||||||||||||||| |||||    
T  46568028 aatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaagttcgttcctacacaagaattt 46567960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 280 - 333
Target Start/End: Original strand, 7298635 - 7298689
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaac-tatcatttttacaaacaacaaatt 333  Q
    |||| |||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  7298635 gagaaattcttgtgtaggaacgaacctaacatatcatttttacaaacaacaaatt 7298689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 280 - 333
Target Start/End: Complemental strand, 40521280 - 40521226
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaac-tatcatttttacaaacaacaaatt 333  Q
    |||| |||||||||||||||| |||||||| ||||||| ||||||||||||||||    
T  40521280 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaatt 40521226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 468 - 545
Target Start/End: Complemental strand, 19804874 - 19804797
Alignment:
Q  468 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 545  Q
    ||||||| || || || ||||| |||||||||||| |||| || |||  |||||||||||||||||||| ||||||||    
T  19804874 aaaacaacgatgtgtcgtgtttcaatttgttgtttgtaaggataataggttaggttcgttcctacacaagaatttctc 19804797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 289 - 333
Target Start/End: Original strand, 47478370 - 47478414
Alignment:
Q  289 ttgtgtaggaactaacctaactatcatttttacaaacaacaaatt 333  Q
    |||||||| ||| ||| ||||||||||| ||||||||||||||||    
T  47478370 ttgtgtagaaacgaacttaactatcattcttacaaacaacaaatt 47478414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 137; Significance: 3e-71; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 285 - 545
Target Start/End: Original strand, 36635243 - 36635502
Alignment:
Q  285 attcttgtgtaggaactaacctaactatcatttttacaaacaacaaatttaaa--tgacatgtcannnnnnnnctttcttttaaccataattggtggtgg 382  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||| |||  ||||| ||           |||||||||||||| |||||||||||    
T  36635243 attcttgtgtaggaacgaacctaactatcattgttacaaacaacaaattaaaacatgacacgt---attttttttttcttttaaccatgattggtggtgg 36635339  T
Q  383 tgaatactaactgcaaataatggttgagagagaggaggagcatttattcttcctttcttaaatcatttccaaattatttaaaaataaaacaatgacgtat 482  Q
    |||||||||| |||||||||||||||||| ||||||| |||| ||||| ||| |||||||||| |||||| |||||||| |||||||||||||||||| |    
T  36635340 tgaatactaagtgcaaataatggttgagaaagaggagaagcagttatttttcatttcttaaattatttcctaattattttaaaataaaacaatgacgtgt 36635439  T
Q  483 catgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 545  Q
    |||||||||||||||||||| ||| |||||||| |||||||||||||||||||| ||||||||    
T  36635440 catgttttaatttgttgtttgtaaaaatgatatgttaggttcgttcctacacaagaatttctc 36635502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 357 - 547
Target Start/End: Original strand, 19580386 - 19580576
Alignment:
Q  357 tttcttttaaccataattggtggtggtgaatactaactgcaaataatggttgagagagaggaggagcatttattcttcctttcttaaatcatttccaaat 456  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||| |||||||||| ||||  ||||    
T  19580386 tttcttttaaccatgattggtggtggtgaatactaactgcaaataatggttgagagagaggaggagcagttgtttttcatttcttaaattattttaaaat 19580485  T
Q  457 tatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctt 547  Q
    ||||| |||||||||||||||| | ||||||||||||||||||||| |||||||||||| ||||||||||||||| |||| ||||||||||    
T  19580486 tattttaaaataaaacaatgacatgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctatacaagaatttctctt 19580576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 436 - 545
Target Start/End: Complemental strand, 11651109 - 11651000
Alignment:
Q  436 tttcttaaatcatttccaaattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacaca 535  Q
    |||||||||| ||||||||||||||| |||||||||||||||  |||||| |||||| ||||||||| |||||||||||| |||||||||||| || |||    
T  11651109 tttcttaaattatttccaaattattttaaaataaaacaatgatatatcatattttaaattgttgtttgtaagaatgatatgttaggttcgttcataaaca 11651010  T
Q  536 aaaatttctc 545  Q
    | ||||||||    
T  11651009 agaatttctc 11651000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 454 - 546
Target Start/End: Complemental strand, 33214534 - 33214442
Alignment:
Q  454 aattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctct 546  Q
    |||||||| |||| ||||||| ||||| ||||||||||||||||||||| |||| ||||||  |||||||||||||||||||| |||||||||    
T  33214534 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctct 33214442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 454 - 538
Target Start/End: Complemental strand, 36274210 - 36274126
Alignment:
Q  454 aattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaa 538  Q
    |||||||| |||| ||||||| ||||| ||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||    
T  36274210 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaaaa 36274126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 454 - 545
Target Start/End: Original strand, 27073081 - 27073172
Alignment:
Q  454 aattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 545  Q
    |||||||| |||| ||||||| ||||| ||||||||||||||||||||| |||| ||||||  |||||||||||||||||||| ||||||||    
T  27073081 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 27073172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 468 - 545
Target Start/End: Complemental strand, 33219149 - 33219072
Alignment:
Q  468 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 545  Q
    |||||||||||| |||||||||||||||||||||| |||| ||||||  |||||||||||||||||||| ||||||||    
T  33219149 aaaacaatgacgaatcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 33219072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 484 - 546
Target Start/End: Complemental strand, 27072974 - 27072912
Alignment:
Q  484 atgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctct 546  Q
    ||||||||||||||||||| |||| |||||| ||||||||||||||||||||| |||||||||    
T  27072974 atgttttaatttgttgtttgtaaggatgatagattaggttcgttcctacacaagaatttctct 27072912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 468 - 546
Target Start/End: Original strand, 33214626 - 33214704
Alignment:
Q  468 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctct 546  Q
    ||||||| ||||| ||||||||||||||||||||| ||||  |||||  |||||||||||||||||||| |||||||||    
T  33214626 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggttgataggttaggttcgttcctacacaagaatttctct 33214704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 468 - 543
Target Start/End: Complemental strand, 10598885 - 10598810
Alignment:
Q  468 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttc 543  Q
    ||||||| ||||| ||||||||||||||||||||| |||  ||||||  |||||||||||||||||||| ||||||    
T  10598885 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaagatgataggttaggttcgttcctacacaagaatttc 10598810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 468 - 547
Target Start/End: Original strand, 36274312 - 36274391
Alignment:
Q  468 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctt 547  Q
    ||||||| ||||| ||||||||||||||||||||| |||  ||||||  |||| |||||||||||| || ||||||||||    
T  36274312 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaagatgataggttagattcgttcctacataagaatttctctt 36274391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 483 - 545
Target Start/End: Original strand, 10599000 - 10599062
Alignment:
Q  483 catgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 545  Q
    |||||||||||||||||||| |||| ||||||| ||||||||||| | |||||| ||||||||    
T  10599000 catgttttaatttgttgtttgtaaggatgatatgttaggttcgtttccacacaagaatttctc 10599062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 280 - 333
Target Start/End: Complemental strand, 36635502 - 36635448
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaac-tatcatttttacaaacaacaaatt 333  Q
    |||| |||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  36635502 gagaaattcttgtgtaggaacgaacctaacatatcatttttacaaacaacaaatt 36635448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 477 - 542
Target Start/End: Complemental strand, 36635305 - 36635241
Alignment:
Q  477 acgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaattt 542  Q
    |||| ||||||||||||||||||||| ||| |||||||  |||||||||||||||||||| |||||    
T  36635305 acgtgtcatgttttaatttgttgtttgtaacaatgata-gttaggttcgttcctacacaagaattt 36635241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 285 - 333
Target Start/End: Original strand, 10598813 - 10598862
Alignment:
Q  285 attcttgtgtaggaactaacctaa-ctatcatttttacaaacaacaaatt 333  Q
    |||||||||||||||| ||||||| ||||||| |||||||||||||||||    
T  10598813 attcttgtgtaggaacgaacctaacctatcatctttacaaacaacaaatt 10598862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 280 - 347
Target Start/End: Complemental strand, 19580574 - 19580504
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaac-tatcatttttacaaacaacaaatttaa--atgacatgtca 347  Q
    |||| |||||||| ||||||| |||||||| ||||||| |||||||||||||||| ||  |||||||||||    
T  19580574 gagaaattcttgtataggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacatgtca 19580504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 280 - 333
Target Start/End: Original strand, 27072913 - 27072967
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaa-ctatcatttttacaaacaacaaatt 333  Q
    |||| |||||||||||||||| ||||||| |||||||  ||||||||||||||||    
T  27072913 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaacaaatt 27072967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 280 - 333
Target Start/End: Complemental strand, 27073172 - 27073118
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaa-ctatcatttttacaaacaacaaatt 333  Q
    |||| |||||||||||||||| ||||||| |||||||  ||||||||||||||||    
T  27073172 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaatt 27073118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 280 - 333
Target Start/End: Original strand, 33214443 - 33214497
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaa-ctatcatttttacaaacaacaaatt 333  Q
    |||| |||||||||||||||| ||||||| |||||||  ||||||||||||||||    
T  33214443 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaatt 33214497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 280 - 333
Target Start/End: Original strand, 33219072 - 33219126
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaa-ctatcatttttacaaacaacaaatt 333  Q
    |||| |||||||||||||||| ||||||| |||||||  ||||||||||||||||    
T  33219072 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaatt 33219126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 83; Significance: 6e-39; HSPs: 2)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 280 - 474
Target Start/End: Original strand, 15847 - 16044
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaac-tatcatttttacaaacaacaaatttaaa--tgacatgtcannnnnnnnctttcttttaaccataattgg 376  Q
    |||| |||||||||||||||| |||||||| ||||||| |||||||||||||||| |||  ||||| || |         |||||||||||||| |||||    
T  15847 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgttattatttttttttcttttaaccatgattgg 15946  T
Q  377 tggtggtgaatactaactgcaaataatggttgagagagaggaggagcatttattcttcctttcttaaatcatttccaaattatttaaaaataaaacaa 474  Q
    | |||||||||| |||| ||||||||||||||||||||||||| |||| ||||| ||| |||||||||| |||||| |||||||| ||||||||||||    
T  15947 tagtggtgaatattaaccgcaaataatggttgagagagaggagtagcagttatttttcatttcttaaattatttcctaattattttaaaataaaacaa 16044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 463 - 546
Target Start/End: Complemental strand, 15929 - 15846
Alignment:
Q  463 aaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctct 546  Q
    |||| |||| ||| |||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||    
T  15929 aaaaaaaaataataacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctct 15846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 50; Significance: 3e-19; HSPs: 4)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 468 - 545
Target Start/End: Original strand, 11814 - 11891
Alignment:
Q  468 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 545  Q
    ||||||| ||||| ||||||||||||||||||||| |||| ||||||  |||||||||||||||||||| ||||||||    
T  11814 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 11891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 454 - 541
Target Start/End: Complemental strand, 11717 - 11630
Alignment:
Q  454 aattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatt 541  Q
    |||||||| |||| |||||||||| || |||| |||||||||||||||| |||| ||||||  |||||||||||||||||||| ||||    
T  11717 aattattttaaaagaaaacaatgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatt 11630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 285 - 338
Target Start/End: Original strand, 11631 - 11685
Alignment:
Q  285 attcttgtgtaggaactaacctaa-ctatcatttttacaaacaacaaatttaaat 338  Q
    |||||||||||||||| ||||||| |||||||  |||||||||||||||| ||||    
T  11631 attcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaat 11685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 280 - 333
Target Start/End: Complemental strand, 11891 - 11837
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaa-ctatcatttttacaaacaacaaatt 333  Q
    |||| |||||||||||||||| ||||||| |||||||  ||||||||||||||||    
T  11891 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaatt 11837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 468 - 545
Target Start/End: Complemental strand, 37523 - 37446
Alignment:
Q  468 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 545  Q
    ||||||| ||||| ||||||||||||||||||||| |||| ||| ||   ||||||||||||||||||| ||||||||    
T  37523 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatggtaggctaggttcgttcctacacaagaatttctc 37446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 454 - 526
Target Start/End: Original strand, 37619 - 37691
Alignment:
Q  454 aattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgt 526  Q
    |||||||| |||| ||||||| |||||| |||||||||||||||||||| |||| ||||||  ||||||||||    
T  37619 aattattttaaaagaaaacaacgacgtagcatgttttaatttgttgtttgtaaggatgataggttaggttcgt 37691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 333
Target Start/End: Complemental strand, 17616 - 17563
Alignment:
Q  280 gagagattcttgtgtaggaactaacctaactatcatttttacaaacaacaaatt 333  Q
    |||| ||||| |||||||||| ||| ||| |||||||||||||||||| |||||    
T  17616 gagatattctcgtgtaggaacgaacgtaagtatcatttttacaaacaataaatt 17563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University