View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2466-Insertion-5 (Length: 570)
Name: NF2466-Insertion-5
Description: NF2466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2466-Insertion-5 |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 8 - 287
Target Start/End: Original strand, 52734152 - 52734431
Alignment:
| Q |
8 |
agaatgcggtgtttgtcattcaaaattggtatcaccagctgcaacaaaaactgtatcaagggcttatgatcgccacaaaaataggattacttcaaaacaa |
107 |
Q |
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| T |
52734152 |
agaatgcagtgtctgtcattcaaaattggtatcaccagctgcaacaaaaactgtatcaagggcttatgatcgccacaaaaataggattacttcaaaacaa |
52734251 |
T |
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| Q |
108 |
cgtgttcttaacatcttgttggttggtggtgactgtatgcttgttggtttccagcctattctagtctatatgtccagagtcgatggcaaattcaatttca |
207 |
Q |
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| T |
52734252 |
cgtgttcttaacatcttgttggttggtggtgactgtatgcttgttggtttccagcctattctagtctatatgtccaaagtcgatggcaaattcaatttca |
52734351 |
T |
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| Q |
208 |
gcccaatcagtgttaattttttgactgagatcactaaggttttctttgctattgttatgcttcttctccaggtattaaaa |
287 |
Q |
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| T |
52734352 |
gcccaatcagtgttaattttttgactgagatcactaaggttttctttgctattgttatgcttcttctccaggtaataaaa |
52734431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 337 - 460
Target Start/End: Original strand, 52734457 - 52734580
Alignment:
| Q |
337 |
agttgttcgtatatccttaggtttcattccttttgcaggctaggaatcaaaaggttggggagaaacctcttctctctatttctacattcatgcaggtact |
436 |
Q |
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|||| ||| |||||||| | |||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
52734457 |
agtttttcttatatcctaatgtttcattacttttgcaggctaggaatcaaaaggttggtgataaacctcttctctctatttctacattcatgcaggtact |
52734556 |
T |
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| Q |
437 |
atattaatcattcctatggaatat |
460 |
Q |
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| T |
52734557 |
atattaatcatttctatggaatat |
52734580 |
T |
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