View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2466-Insertion-6 (Length: 557)
Name: NF2466-Insertion-6
Description: NF2466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2466-Insertion-6 |
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Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 47 - 553
Target Start/End: Original strand, 13889693 - 13890199
Alignment:
| Q |
47 |
taccagttaagtaagggttttgattttacctggttcaacttgaaaatgcaacgacgaatcaaaaactttgtaacgatcctcactaacgagcacattgaac |
146 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13889693 |
taccagttaagtaagggttttgattttacctggttcaacttgaaaatgcaacgacgaatcaaaaactttgtaacgatcctcactaacgagcacattgaac |
13889792 |
T |
|
| Q |
147 |
aatccgaccctaataggagtgaaggaaatcttccaactatcaaaatctccttcgaaattcgacaacacggtggatacataggaactatttccatcctttc |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13889793 |
aatccgaccctaataggagtgaaggaaatcttccaattatcaaaatctcctttgaaattcgacaacacggtggatacataggaactatttccatcctttc |
13889892 |
T |
|
| Q |
247 |
cattgacattaagtatgagatggaannnnnnnnggtcaatcttatcaccattctcaagtactttaaccttaattgttgcagtttcaccagccccaaatgt |
346 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
13889893 |
cattgacattaagtatgagatggaatttttttttgtcaatcttatcaccattctcaagtactttaaccttaattgttgcagtttcaccagccctaaatgt |
13889992 |
T |
|
| Q |
347 |
tcccttatcatcccaccaactaaaagcaatcataggcaattgtgatctatctgcaatgaaacaataaacnnnnnnnnnnnnttataaatgttata-attt |
445 |
Q |
| |
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||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||| | | |||||||| ||| |
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| T |
13889993 |
tcccttatcatcccaccaactaaaagcaatcatcggaagttgtgatctatctgcaatgaaacaataaacaaaaacaaaaaa-gacacatgttatattttt |
13890091 |
T |
|
| Q |
446 |
cttttacacaagaaaattaagataagaaatagtgttgctcatagttctaaattgcggttgtaatatagaagttttagaggtctctgcaacgatgttgaaa |
545 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||| |||||| | |||||| |
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|
| T |
13890092 |
tttttacacaagaaaattaagataaaaaatagtgttgctcatagttctaaattgtggtcgtaatataaaagttttagaggtctttgcaacaacattgaaa |
13890191 |
T |
|
| Q |
546 |
ctacaatt |
553 |
Q |
| |
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||| |||| |
|
|
| T |
13890192 |
ctataatt |
13890199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 47 - 553
Target Start/End: Original strand, 14029818 - 14030324
Alignment:
| Q |
47 |
taccagttaagtaagggttttgattttacctggttcaacttgaaaatgcaacgacgaatcaaaaactttgtaacgatcctcactaacgagcacattgaac |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14029818 |
taccagttaagtaagggttttgattttacctggttcaacttgaaaatgcaacgacgaatcaaaaactttgtaacgatcctcactaacgagcacattgaac |
14029917 |
T |
|
| Q |
147 |
aatccgaccctaataggagtgaaggaaatcttccaactatcaaaatctccttcgaaattcgacaacacggtggatacataggaactatttccatcctttc |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14029918 |
aatccgaccctaataggagtgaaggaaatcttccaattatcaaaatctcctttgaaattcgacaacacggtggatacataggaactatttccatcctttc |
14030017 |
T |
|
| Q |
247 |
cattgacattaagtatgagatggaannnnnnnnggtcaatcttatcaccattctcaagtactttaaccttaattgttgcagtttcaccagccccaaatgt |
346 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
14030018 |
cattgacattaagtatgagatggaatttttttttgtcaatcttatcaccattctcaagtactttaaccttaattgttgcagtttcaccagccctaaatgt |
14030117 |
T |
|
| Q |
347 |
tcccttatcatcccaccaactaaaagcaatcataggcaattgtgatctatctgcaatgaaacaataaacnnnnnnnnnnnnttataaatgttata-attt |
445 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||| | | |||||||| ||| |
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|
| T |
14030118 |
tcccttatcatcccaccaactaaaagcaatcatcggaagttgtgatctatctgcaatgaaacaataaacaaaaacaaaaaa-gacacatgttatattttt |
14030216 |
T |
|
| Q |
446 |
cttttacacaagaaaattaagataagaaatagtgttgctcatagttctaaattgcggttgtaatatagaagttttagaggtctctgcaacgatgttgaaa |
545 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||| |||||| | |||||| |
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|
| T |
14030217 |
tttttacacaagaaaattaagataaaaaatagtgttgctcatagttctaaattgtggtcgtaatataaaagttttagaggtctttgcaacaacattgaaa |
14030316 |
T |
|
| Q |
546 |
ctacaatt |
553 |
Q |
| |
|
||| |||| |
|
|
| T |
14030317 |
ctataatt |
14030324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 13889632 - 13889682
Alignment:
| Q |
11 |
aatacagatagacacacactagcgtgctcgtctttctaccagttaagtaag |
61 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13889632 |
aatacagatagacacacactagcgtgctcgtctttctaccagttaagtaag |
13889682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 14029757 - 14029807
Alignment:
| Q |
11 |
aatacagatagacacacactagcgtgctcgtctttctaccagttaagtaag |
61 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14029757 |
aatacagatagacacacactagcgtgctcgtctttctaccagttaagtaag |
14029807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 35 - 399
Target Start/End: Original strand, 7690940 - 7691305
Alignment:
| Q |
35 |
tgctcgtctttctaccagttaagtaa-gggttttgattttacctggttcaacttgaaaatgcaacgacgaatcaaaaactttgtaacgatcctcactaac |
133 |
Q |
| |
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|||| |||||||| ||| ||||||| ||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
7690940 |
tgcttgtctttctgccaaataagtaaagggttttgattatacctggttcaacttggaaatgcaacgatgaatcaaaaactttgtagcgatcctcactaat |
7691039 |
T |
|
| Q |
134 |
gagcacattgaacaatccgaccctaataggagtgaaggaaatcttccaactatcaaaatctccttcgaaattcgacaacacggtggatacataggaacta |
233 |
Q |
| |
|
|||||||||||||| ||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||| |
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|
| T |
7691040 |
gagcacattgaacagtccaaccttaataggagtgaaggaaatcttccaatgatcaaaatctccttcgaaattcgacaacactgttgatacataggaacta |
7691139 |
T |
|
| Q |
234 |
tttccatcctttccattgacattaagtatgagatggaannnnnnnnggtcaatcttatcaccattctcaagtactttaaccttaattgttgcagtttcac |
333 |
Q |
| |
|
|| || |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
7691140 |
ttcccttcctttccattgacattaagtatgagatggaaattatttttgtcaattttatcaccattctcaagtactttaaccttaatggttgcagtttcac |
7691239 |
T |
|
| Q |
334 |
cagccccaaatgttcccttatcatcccaccaactaaaagcaatcataggcaattgtgatctatctg |
399 |
Q |
| |
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| |||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
7691240 |
cggccctaaatgtccccttatcatcccaccaactgaaagcaatcataggcaattgtgatctatctg |
7691305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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