View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2466-Insertion-7 (Length: 520)
Name: NF2466-Insertion-7
Description: NF2466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2466-Insertion-7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 162; Significance: 3e-86; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 8 - 242
Target Start/End: Original strand, 23414108 - 23414349
Alignment:
| Q |
8 |
gaatgatagataggaaaggcaaattcaccctccaaagctacctaacaaacattctcctcattgaaaaagta-ttatgtgtgaatgtaattaatatattcg |
106 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
23414108 |
gaatgatagatgggaaaggtaaattcaccctccaaagctacctaaccaacattctcctcattgaaaaagtatttatgtgtgaatgtaattaatatattcg |
23414207 |
T |
|
| Q |
107 |
attctctacctaattacgcaaccacggc--tggctgatgacaaagagcaaaagaaagtgcaaaatcaaaagtgccaagcaaagatggattcctatacaaa |
204 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
23414208 |
attct-tacctaattacgcaaccacggctgtggctgatgacaaagagc-agagaaagtgcaaaatcaaaagtgtcaagcaaagatggattcccatacaaa |
23414305 |
T |
|
| Q |
205 |
tttaataaattatttc------ggctaagttcatacagcttttt |
242 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
23414306 |
tttaataaattatttccaattaggctaagttcatacagcttttt |
23414349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 322 - 520
Target Start/End: Original strand, 23414498 - 23414691
Alignment:
| Q |
322 |
ggtttatcattagtcggctttatggtgcaaccgtccataggtcgacctctttgagaaactcaaatgaaaaactagtattatcaattagtaggattcattt |
421 |
Q |
| |
|
||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||| |||| |
|
|
| T |
23414498 |
ggtttatcattagtcagctttatggtgcaaccatctataggtcgacctctttgagaaactcaaatcaaaaactagtatgatcaattagtgggatttattt |
23414597 |
T |
|
| Q |
422 |
actaaattgagtttcactaatcttcaacttgtgtctatctatcttagaaatgaatgtagaaaaatagagcaaactcgaacttacttctctctattaatc |
520 |
Q |
| |
|
|||||||||||||||| | |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23414598 |
actaaattgagtttcagtgatcttcaatttgtgtctatctatctta-----gaatgtagaaaaatagagcaaactcgaacttacttctctctattaatc |
23414691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University