View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2466-Insertion-8 (Length: 489)
Name: NF2466-Insertion-8
Description: NF2466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2466-Insertion-8 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 448; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 8 - 489
Target Start/End: Original strand, 39689123 - 39689612
Alignment:
| Q |
8 |
atatttgcataagctttatataaatcaaaatgcaaagatatacagaagaattaatactgaatgagataggagagatgaaacaaagtaacaaagggcatgt |
107 |
Q |
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| T |
39689123 |
atatttgcataagctttatataaatcaaaatgcaaagatatacagaagaattaatactgaatgagataggagagatgaaacaaagtaacaaagggcatgt |
39689222 |
T |
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| Q |
108 |
tccagtgctagtagggaaaaaggaag------aagaagaagatatggagaggatttgggtgagcatcaaagtgattcaccatcccaaaattgttgaattg |
201 |
Q |
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| T |
39689223 |
tccagtgctagtaggcaaaaaggaagaagaagaagaagaagatatggagaggatttgggtgagcatcaaagtgattcaccatcccaaaattgttgaattg |
39689322 |
T |
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| Q |
202 |
ttggaacaatctgctaaagaatatggataccaacaaggtgtgcttagaatcagacgtgatattgagatcttcaaagtcattcttgctaacatatcttgca |
301 |
Q |
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| T |
39689323 |
ttggaacaatctgctaaagaatatggataccaacagggtgtgcttagaatcagacgtgatattgagatcttcaaagtcattcttgctaacatatcttgca |
39689422 |
T |
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| Q |
302 |
cttcacgggttgctttgtctaattaattgtctttgttattagtattaaactcaatgtaacattattattttcattcaaatcccctttttattcaccaaac |
401 |
Q |
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| T |
39689423 |
cttcacgggttgctttgtctaattaattgtctttgttattagtattaaactcaatgtaacattattattttcattcaaatcccctttttattcaccaaac |
39689522 |
T |
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| Q |
402 |
tctctgtaataatatatagtctatc--tttagtcttaataactattactttttgtctctcaaataaattttcgtcagctttcgacctcta |
489 |
Q |
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| T |
39689523 |
tctctgtaataatatatagtctatctttttagtcttaataactattactttttgtctctcaaataaattttcgtcagctttcgacctcta |
39689612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 65 - 293
Target Start/End: Original strand, 39683727 - 39683949
Alignment:
| Q |
65 |
tgaatgagataggagagatgaaacaaagtaacaaagggcatgttccagtgctagtagggaaaaaggaagaagaagaagatatggagaggatttgggtgag |
164 |
Q |
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| T |
39683727 |
tgaattagagagaagatatgaaacaaagtaacaaagggcatgttccggtgctagtaagcaaa------ggaggagaagatatggagaggatttgggtgag |
39683820 |
T |
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| Q |
165 |
catcaaagtgattcaccatcccaaaattgttgaattgttggaacaatctgctaaagaatatggataccaacaaggtgtgcttagaatcagacgtgatatt |
264 |
Q |
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| T |
39683821 |
catcaaagtgattcatcatccaaaaattgttgaattcttagaacaatctgctaaagagtatggataccaacaaggtgtgcttagaatcatatgtgatgtt |
39683920 |
T |
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| Q |
265 |
gagatcttcaaagtcattcttgctaacat |
293 |
Q |
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| T |
39683921 |
gacgactttaaagacattcttgctaacat |
39683949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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