View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2466-Insertion-9 (Length: 459)

Name: NF2466-Insertion-9
Description: NF2466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2466-Insertion-9
NF2466-Insertion-9
[»] chr4 (6 HSPs)
chr4 (8-459)||(32221406-32221851)
chr4 (8-66)||(39319371-39319431)
chr4 (8-98)||(41816535-41816627)
chr4 (408-459)||(19105981-19106032)
chr4 (9-60)||(12877996-12878048)
chr4 (8-72)||(19106343-19106408)
[»] chr3 (3 HSPs)
chr3 (54-338)||(12966210-12966489)
chr3 (8-98)||(12112950-12113041)
chr3 (8-98)||(6606957-6607049)
[»] chr2 (5 HSPs)
chr2 (8-248)||(30655178-30655417)
chr2 (8-168)||(25478596-25478759)
chr2 (13-81)||(30650648-30650717)
chr2 (408-459)||(25479512-25479564)
chr2 (408-459)||(25487118-25487170)
[»] chr7 (2 HSPs)
chr7 (54-170)||(10388697-10388816)
chr7 (309-394)||(10388936-10389023)
[»] chr5 (3 HSPs)
chr5 (347-459)||(11981910-11982022)
chr5 (8-98)||(23977624-23977717)
chr5 (106-248)||(11981682-11981820)
[»] scaffold0070 (1 HSPs)
scaffold0070 (9-98)||(62708-62799)
[»] chr8 (2 HSPs)
chr8 (9-98)||(25368324-25368415)
chr8 (13-81)||(40126170-40126239)
[»] scaffold0060 (1 HSPs)
scaffold0060 (9-98)||(48190-48281)
[»] scaffold0045 (1 HSPs)
scaffold0045 (8-37)||(82830-82859)


Alignment Details
Target: chr4 (Bit Score: 389; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 8 - 459
Target Start/End: Original strand, 32221406 - 32221851
Alignment:
Q  8 gttataacaacaacactaagaaattcacatatgcaactttgaattgtttgaaatttatattcaaaagtcaaaactgcattgtgaataaatactaaccgtt 107  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32221406 gttataacgacaacacaaagaaattcacatatgcaactttgaattgtttgaaatttatattcaaaagtcaaaactgcattgtgaataaatactaaccgtt 32221505  T
Q  108 aagagactagaaccaacaagtgttgtagcatcgtccttaattttccacttgattcttgacaatcgacaaaacagatatttatcgtaacaaactgtttaaa 207  Q
    |||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32221506 aagagaatagaaccaacaagtgttgtagcatcgatcttaattttccacttgattcttgacaatcgacaaaacagatatttatcgtaacaaactgtttaaa 32221605  T
Q  208 gcagctgatcggagtaggataaaaaattagttgtcaagtatcggaaatttcgtactgcgcgtgtgcgacccttgaatgttgcaaatgataatgatgcaaa 307  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||||||||||      |||| ||||||||||||||||||||||||||||||||||    
T  32221606 gcagctgatcggagtaagataaaaaattagttgtcaagtttcggaaatttcgtac------tgtgagacccttgaatgttgcaaatgataatgatgcaaa 32221699  T
Q  308 aggttctaaattttaaggttgagcatgagcttaccagttaaggatattgtgcttgctttagttaaccaacctcctgttcgagaacatggaataagtttta 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  32221700 aggttctaaattttaaggttgagcatgagcttaccagttaaggatattgtgcttgctttagttaaccaacctcctgttcgaacacatggaataagtttta 32221799  T
Q  408 tttggtaaattaaagcacatgtatatttttatgaacttgagctcgagtacca 459  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32221800 tttggtaaattaaagcacatgtatatttttatgaacttgagctcgagtacca 32221851  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 39319431 - 39319371
Alignment:
Q  8 gttataacaacaacactaa-gaaattcacatatgcaactttgaat-tgtttgaaatttata 66  Q
    |||||||||||||||| || ||||||||||||||| ||||||||| |||||||||||||||    
T  39319431 gttataacaacaacaccaacgaaattcacatatgcgactttgaatatgtttgaaatttata 39319371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 98
Target Start/End: Complemental strand, 41816627 - 41816535
Alignment:
Q  8 gttataacaacaacactaa-gaaattcacatatgcaactttgaat-tgtttgaaatttatattcaaaagtcaaaactgcattgtgaataaata 98  Q
    ||||| ||||||||||||| |||||||||||||||  |||| ||| |||||||||||||| ||||||| ||| ||| ||| ||||||| ||||    
T  41816627 gttattacaacaacactaacgaaattcacatatgcttctttaaatctgtttgaaatttattttcaaaaatcagaaccgcactgtgaattaata 41816535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 408 - 459
Target Start/End: Complemental strand, 19106032 - 19105981
Alignment:
Q  408 tttggtaaattaaagcacatgtatatttttatgaacttgagctcgagtacca 459  Q
    |||||||||||||||||||||||||| ||| |||| |||||||| |||||||    
T  19106032 tttggtaaattaaagcacatgtatatctttgtgaatttgagctccagtacca 19105981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 12878048 - 12877996
Alignment:
Q  9 ttataacaacaacactaagaaattcacatatgcaactttgaa-ttgtttgaaa 60  Q
    |||||||||||||| |||||||||||||||||| | |||||| ||||||||||    
T  12878048 ttataacaacaacagtaagaaattcacatatgcgattttgaatttgtttgaaa 12877996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 19106408 - 19106343
Alignment:
Q  8 gttataacaacaacactaagaaattcacatatgcaactttgaat-tgtttgaaatttatattcaaa 72  Q
    ||||||||||||||||||| ||||| |||||||  ||||  ||| |||||||||||||| ||||||    
T  19106408 gttataacaacaacactaaaaaattaacatatgtgacttgaaatctgtttgaaatttattttcaaa 19106343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 2e-47; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 54 - 338
Target Start/End: Original strand, 12966210 - 12966489
Alignment:
Q  54 tttgaaatttatattcaaaagtcaaaactgcattgtgaataaatac---taaccgttaagagactagaaccaacaagtgttgtagcatcgtccttaattt 150  Q
    |||||||||||| ||||| | ||||||| ||| | ||||| ||||    |||| ||||||||| ||||||| ||||||||||| ||||||||||||||||    
T  12966210 tttgaaatttattttcaataatcaaaaccgcactttgaattaataactttaacggttaagagaatagaaccgacaagtgttgttgcatcgtccttaattt 12966309  T
Q  151 tccacttgattcttgacaatcgacaaa-acagatatttatcgtaacaaactgtt--taaagcagctgatcggagtaggataaaaaattagttgtcaagta 247  Q
    ||| |||||||||||||||| |||||| ||| ||||||||| |||||||||| |   ||| || ||||| ||| |||||||||||  || ||||||||||    
T  12966310 tccccttgattcttgacaattgacaaagacatatatttatcataacaaactgctgagaaaacaactgat-ggaataggataaaaa--taattgtcaagta 12966406  T
Q  248 tcggaaatttcgtactgcgcgtgtgcgacccttgaatgttgcaaatgataatgatgcaaaaggttctaaattttaaggttgagcatgagct 338  Q
    | |||||||| |||||       ||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||| |||||||||    
T  12966407 ttggaaattttgtact-------tgcgacccttgaatgttgcaaatgtaaatgatgc-aaaggttctaaattttaaggttgcgcatgagct 12966489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 8 - 98
Target Start/End: Original strand, 12112950 - 12113041
Alignment:
Q  8 gttataacaacaacactaagaaattcacatatgcaactttgaat-tgtttgaaatttatattcaaaagtcaaaactgcattgtgaataaata 98  Q
    ||||||||||||||| ||||||||||||| |||| | ||||||| |||||||||||||| ||||||| ||| ||| ||| ||||||||||||    
T  12112950 gttataacaacaacaataagaaattcacagatgcgattttgaatatgtttgaaatttattttcaaaaatcagaaccgcactgtgaataaata 12113041  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 8 - 98
Target Start/End: Original strand, 6606957 - 6607049
Alignment:
Q  8 gttataacaacaacactaa-gaaattcacatatgcaactttgaat-tgtttgaaatttatattcaaaagtcaaaactgcattgtgaataaata 98  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||| ||||||| ||| ||| ||| |||  |||||||    
T  6606957 gttataacaacaacactaacgaaattcacatatgctactttgaatctgtttgaaatttattttcaaaaatcagaaccgcactgttgataaata 6607049  T

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Target: chr2 (Bit Score: 74; Significance: 9e-34; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 8 - 248
Target Start/End: Complemental strand, 30655417 - 30655178
Alignment:
Q  8 gttataacaacaacactaagaaattcacatatgcaactttgaatt-gtttgaaatttatattcaaaagtcaaaactgcattgtgaataaatac---taac 103  Q
    |||||||||||||||||||||||||||||||||  |||  ||||| ||||||||||||  ||||||| | | ||| |||  |||||||||||    |||     
T  30655417 gttataacaacaacactaagaaattcacatatgtgactcggaatttgtttgaaatttactttcaaaa-tgagaaccgcaccgtgaataaataactttaat 30655319  T
Q  104 cgttaagagactagaaccaacaagtgttgtagcatcgtccttaattttccacttgattcttgacaatcgac-aaaacagatatttatcgtaacaaactgt 202  Q
      |||||||| ||||||| ||||||||||  ||||||||||||||||| |||||||||||||||||| ||| ||||||||||||| |||||||  ||||     
T  30655318 gattaagagaatagaaccgacaagtgttgatgcatcgtccttaatttttcacttgattcttgacaattgacaaaaacagatatttgtcgtaac-tactg- 30655221  T
Q  203 ttaaagcagctgatcggagtaggataaaaaattagttgtcaagtat 248  Q
      |||||||||||||||||  |||| ||||||| ||||||||||||    
T  30655220 --aaagcagctgatcggagacggat-aaaaattggttgtcaagtat 30655178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 8 - 168
Target Start/End: Original strand, 25478596 - 25478759
Alignment:
Q  8 gttataacaacaacactaagaaattcacatatgcaactttgaa-ttgtttgaaatttatattcaaaagtcaaaactgcattgtgaataaata---ctaac 103  Q
    |||||||||||||||||||||||||||||||||  | || |||  |||||||||||||| ||| ||| ||| ||  | ||||||||||||||    |||     
T  25478596 gttataacaacaacactaagaaattcacatatgtgatttggaacctgtttgaaatttattttc-aaattcagaatcgtattgtgaataaataactttaat 25478694  T
Q  104 cgttaagagactagaaccaacaagtgttgtagcatcgtccttaattttccacttgattcttgaca 168  Q
      |||||||| |||||||| || ||||||| |||||||| ||||||||| | |||| ||||||||    
T  25478695 aattaagagaatagaaccatcatgtgttgttgcatcgtcgttaattttctaattgactcttgaca 25478759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 30650717 - 30650648
Alignment:
Q  13 aacaacaacactaagaaattcacatatgcaactttgaa-ttgtttgaaatttatattcaaaagtcaaaac 81  Q
    ||||||||||||||||||||||| ||||  |||||||| ||| ||||||||| |  |||||| |||||||    
T  30650717 aacaacaacactaagaaattcacgtatgtgactttgaatttgattgaaatttgttctcaaaaatcaaaac 30650648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 408 - 459
Target Start/End: Original strand, 25479512 - 25479564
Alignment:
Q  408 tttggtaaatt-aaagcacatgtatatttttatgaacttgagctcgagtacca 459  Q
    ||||||||||| ||||||||||||||| ||| |||| |||||||| |||||||    
T  25479512 tttggtaaatttaaagcacatgtatatctttgtgaatttgagctccagtacca 25479564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 408 - 459
Target Start/End: Original strand, 25487118 - 25487170
Alignment:
Q  408 tttggtaaatt-aaagcacatgtatatttttatgaacttgagctcgagtacca 459  Q
    ||||||||||| ||||||||||||||| ||| |||| |||||||| |||||||    
T  25487118 tttggtaaatttaaagcacatgtatatctttgtgaatttgagctccagtacca 25487170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 54 - 170
Target Start/End: Original strand, 10388697 - 10388816
Alignment:
Q  54 tttgaaatttatattcaaaagtcaaaactgcattgtgaataaatac---taaccgttaagagactagaaccaacaagtgttgtagcatcgtccttaattt 150  Q
    |||||||| ||| ||||||| ||| ||| ||| ||||||||||||    |||| ||||||||| || |||| ||||||||||| ||||||||||||||||    
T  10388697 tttgaaatctattttcaaaaatcagaacggcaatgtgaataaataactttaactgttaagagaataaaaccgacaagtgttgttgcatcgtccttaattt 10388796  T
Q  151 tccacttgattcttgacaat 170  Q
    ||||||||||||||||||||    
T  10388797 tccacttgattcttgacaat 10388816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 394
Target Start/End: Original strand, 10388936 - 10389023
Alignment:
Q  309 ggttctaaatttt-aaggttgagcatgagcttaccagttaa-ggatattgtgcttgctttagttaaccaacctcctgttcgagaacat 394  Q
    ||||||||||||| |||||||||||||||  |||||  ||| |||| |||||||||||| | ||||||||| | ||||||||| ||||    
T  10388936 ggttctaaatttttaaggttgagcatgagtgtaccacataaaggatcttgtgcttgcttcacttaaccaacgtactgttcgagcacat 10389023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 347 - 459
Target Start/End: Original strand, 11981910 - 11982022
Alignment:
Q  347 aaggatattgtgcttgctttagttaaccaacctcctgttcgagaacatggaataagttttatttggtaaattaaagcacatgtatatttttatgaacttg 446  Q
    |||||| |||||||||||| | | | |||||||| |||||||| || |||  |||||||| |||||||||||  |||||| |||||| |||||||| |||    
T  11981910 aaggatcttgtgcttgcttcaataagccaacctcgtgttcgagcacttggtctaagttttctttggtaaatttgagcacacgtatatctttatgaatttg 11982009  T
Q  447 agctcgagtacca 459  Q
    |||||||||||||    
T  11982010 agctcgagtacca 11982022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 98
Target Start/End: Original strand, 23977624 - 23977717
Alignment:
Q  8 gttataacaacaacactaa-gaaattcacatatgcaactttgaat-tg-tttgaaatttatattcaaaagtcaaaactgcattgtgaataaata 98  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||| || |||||||||||| || |||| ||| |||  || ||||||||||||    
T  23977624 gttataacaacaacactaacgaaattcacatatgctactttgaatctgttttgaaatttattttaaaaaatcagaaccacactgtgaataaata 23977717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 248
Target Start/End: Original strand, 11981682 - 11981820
Alignment:
Q  106 ttaagagactagaaccaacaagtgttgtagcatcgtccttaattttccacttgattcttgacaatcgaca-aaacagatatttatcgtaacaaactgttt 204  Q
    |||||||| ||||||| ||||||||||  ||||||||||||| |||  |||| |||||||||||| |||| ||||| |||| | ||||    || || |     
T  11981682 ttaagagaatagaaccgacaagtgttgatgcatcgtccttaaatttttacttaattcttgacaattgacataaacaaatatctgtcgt----aagtgctg 11981777  T
Q  205 aaagcagctgatcggagtaggataaaaaattagttgtcaagtat 248  Q
    ||||||||||||||||||  ||| |||| || ||||||||||||    
T  11981778 aaagcagctgatcggagtttgat-aaaatttggttgtcaagtat 11981820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 9 - 98
Target Start/End: Complemental strand, 62799 - 62708
Alignment:
Q  9 ttataacaacaacactaa-gaaattcacatatgcaactttgaat-tgtttgaaatttatattcaaaagtcaaaactgcattgtgaataaata 98  Q
    |||||||||| ||||||| ||||||||||||||| ||||||||| |||||||||||||| ||||||| ||| ||| ||| ||||||| ||||    
T  62799 ttataacaactacactaacgaaattcacatatgctactttgaatctgtttgaaatttattttcaaaaatcagaaccgcactgtgaattaata 62708  T

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Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 9 - 98
Target Start/End: Original strand, 25368324 - 25368415
Alignment:
Q  9 ttataacaacaacactaa-gaaattcacatatgcaactttgaat-tgtttgaaatttatattcaaaagtcaaaactgcattgtgaataaata 98  Q
    |||||||||| ||||||| ||||||||||||||| ||||||||| |||||||||||||| ||||||| ||| ||| ||| ||||||| ||||    
T  25368324 ttataacaactacactaacgaaattcacatatgctactttgaatctgtttgaaatttattttcaaaaatcagaaccgcactgtgaattaata 25368415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 40126170 - 40126239
Alignment:
Q  13 aacaacaacactaagaaattcacatatgcaactttgaa-ttgtttgaaatttatattcaaaagtcaaaac 81  Q
    ||||||||||||||||||||||| ||||  |||||||| ||| ||||||||| |  |||||| |||||||    
T  40126170 aacaacaacactaagaaattcacgtatgtgactttgaatttgattgaaatttgttctcaaaaatcaaaac 40126239  T

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Target: scaffold0060 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 98
Target Start/End: Original strand, 48190 - 48281
Alignment:
Q  9 ttataacaacaacactaa-gaaattcacatatgcaactttgaat-tgtttgaaatttatattcaaaagtcaaaactgcattgtgaataaata 98  Q
    |||||||||| ||||||| |||||||| |||| | ||||||||| |||||||||||||| ||||||| ||| ||| | ||||||||| ||||    
T  48190 ttataacaactacactaacgaaattcatatattctactttgaatctgtttgaaatttattttcaaaaatcagaaccgtattgtgaattaata 48281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 37
Target Start/End: Complemental strand, 82859 - 82830
Alignment:
Q  8 gttataacaacaacactaagaaattcacat 37  Q
    ||||||||||||||||||||||||||||||    
T  82859 gttataacaacaacactaagaaattcacat 82830  T

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