View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2466R-Insertion-10 (Length: 259)
Name: NF2466R-Insertion-10
Description: NF2466R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2466R-Insertion-10 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 9 - 257
Target Start/End: Original strand, 45645552 - 45645800
Alignment:
| Q |
9 |
aatgttgtgtcaactcctataatnnnnnnngacccttcagtttactacgttttgacattagaagcatttagtgttggaaacaaaagagtagaatttggag |
108 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45645552 |
aatgttgtgtcaactcctataataaaaaaagacccttcagtttactacgttttgacattagaagcatttagtgttggaaacaaaagagtagaatttggag |
45645651 |
T |
|
| Q |
109 |
ggtcttcagaggatggtgatgaaggtaacattataattgattcaagtacaacattgatggttttaccagctgacgtttataaaaatttggaatcagctgt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45645652 |
ggtcttcagaggatggtgatgaaggtaacattataattgattcaggtacaacattgatggttttaccagctgacgtttataaaaatttggaatcagctgt |
45645751 |
T |
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| Q |
209 |
ggttgatttggtgaaactaaagcgtgtggatgatccttataaactattc |
257 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
45645752 |
ggttgatttggtgaaactaaaacgtgtggatgatccttataaactattc |
45645800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 104
Target Start/End: Original strand, 1390499 - 1390533
Alignment:
| Q |
70 |
aagcatttagtgttggaaacaaaagagtagaattt |
104 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
1390499 |
aagcatttagtgttggaaacaaaagagtagaattt |
1390533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 48 - 259
Target Start/End: Original strand, 34646392 - 34646606
Alignment:
| Q |
48 |
gtttactacgttttgacattagaagcatttagtgttggaaacaaaagagtagaatttggagggtcttcagaggatgg---tgatgaaggtaacattataa |
144 |
Q |
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|||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| || | ||| ||||||||||||||| |||| |
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| T |
34646392 |
gttttctactttttgacattacaagcatttagtgttggaaacaaaagagtagaatttggaggctcttcggaaggtggtgatgatgaaggtaacatcataa |
34646491 |
T |
|
| Q |
145 |
ttgattcaagtacaacattgatggttttaccagctgacgtttataaaaatttggaatcagctgtggttgatttggtgaaactaaagcgtgtggatgatcc |
244 |
Q |
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|||||||| |||||||||||| || |||| | ||||| |||| || ||||||||||||||||| ||||||||||||||| | ||||| |||||||| |
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| T |
34646492 |
ttgattcaggtacaacattgacacttataccttccgacgtctatactaacttggaatcagctgtggtggatttggtgaaactagatcgtgttgatgatcc |
34646591 |
T |
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| Q |
245 |
ttataaactattcag |
259 |
Q |
| |
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| || ||| |||||| |
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| T |
34646592 |
taatcaacaattcag |
34646606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 48 - 259
Target Start/End: Original strand, 34666086 - 34666300
Alignment:
| Q |
48 |
gtttactacgttttgacattagaagcatttagtgttggaaacaaaagagtagaatttggagggtcttcagaggatgg---tgatgaaggtaacattataa |
144 |
Q |
| |
|
|||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| || | ||| ||||||||||||||| |||| |
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| T |
34666086 |
gttttctactttttgacattacaagcatttagtgttggaaacaaaagagtagaatttggaggctcttcggaaggtggtgatgatgaaggtaacatcataa |
34666185 |
T |
|
| Q |
145 |
ttgattcaagtacaacattgatggttttaccagctgacgtttataaaaatttggaatcagctgtggttgatttggtgaaactaaagcgtgtggatgatcc |
244 |
Q |
| |
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|||||||| |||||||||||| || |||| | ||||| |||| || ||||||||||||||||| ||||||||||||||| | ||||| |||||||| |
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| T |
34666186 |
ttgattcaggtacaacattgacacttataccttccgacgtctatactaacttggaatcagctgtggtggatttggtgaaactagatcgtgttgatgatcc |
34666285 |
T |
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| Q |
245 |
ttataaactattcag |
259 |
Q |
| |
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| || ||| |||||| |
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| T |
34666286 |
taatcaacaattcag |
34666300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 59 - 256
Target Start/End: Complemental strand, 19649142 - 19648948
Alignment:
| Q |
59 |
tttgacattagaagcatttagtgttggaaacaaaagagtagaatttggagggtcttcagaggatggtgatgaaggtaacattataattgattcaagtaca |
158 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||| ||||||||| || | | ||| || |||| || |||||||| ||| ||||||| ||||| |
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| T |
19649142 |
tttgacgttagaagcatttagtgttggaaacaaaagaatagaatttgaagtg---ttagatgacagtgaggagggtaacatcatacttgattctggtaca |
19649046 |
T |
|
| Q |
159 |
acattgatggttttaccagctgacgtttataaaaatttggaatcagctgtggttgatttggtgaaactaaagcgtgtggatgatccttataaactatt |
256 |
Q |
| |
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||||||| ||||||| || | ||||||| ||||||||||| || || | | ||||||||||| | ||||| ||||||||| || ||||||| |
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| T |
19649045 |
acattgactcttttaccgtctcatgtttatactaatttggaatcggcggtagcacaactggtgaaactagatcgtgttgatgatcctaatcaactatt |
19648948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 59 - 244
Target Start/End: Original strand, 14183350 - 14183535
Alignment:
| Q |
59 |
tttgacattagaagcatttagtgttggaaacaaaagagtagaatttggagggtcttcagaggatggtgatgaaggtaacattataattgattcaagtaca |
158 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||| ||||||||| |||||||||| | | |||| ||||||||||||| |||||||||||| ||||| |
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| T |
14183350 |
tttgacattggaagcatttagtgttggtaacaaaagaatagaatttgaagggtcttcaaatggtggtcatgaaggtaacatcataattgattcaggtaca |
14183449 |
T |
|
| Q |
159 |
acattgatggttttaccagctgacgtttataaaaatttggaatcagctgtggttgatttggtgaaactaaagcgtgtggatgatcc |
244 |
Q |
| |
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|| |||| |||| | ||| |||| |||||||| |||||||||||||| ||| | || ||||||||||| |||||||| ||||||| |
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| T |
14183450 |
acgttgacggttattccaactgatgtttataataatttggaatcagcggtgttggaattggtgaaactgaagcgtgttaatgatcc |
14183535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 46 - 244
Target Start/End: Original strand, 40718094 - 40718292
Alignment:
| Q |
46 |
cagtttactacgttttgacattagaagcatttagtgttggaaacaaaagagtagaatttggagggtcttcagaggatggtgatgaaggtaacattataat |
145 |
Q |
| |
|
|||||| |||| ||||||||| ||||||||||||||||||||||||||| |||||||||| | |||||| | | | ||||||| |||||||| ||||| |
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|
| T |
40718094 |
cagttttctactatttgacattggaagcatttagtgttggaaacaaaagaatagaatttggcagatcttcaaatggtagtgatgagggtaacatcataat |
40718193 |
T |
|
| Q |
146 |
tgattcaagtacaacattgatggttttaccagctgacgtttataaaaatttggaatcagctgtggttgatttggtgaaactaaagcgtgtggatgatcc |
244 |
Q |
| |
|
||||||| ||||||| |||| | |||| ||| || | ||||||| |||||||||||||| |||| || | ||||||||| ||||||| |||||||| |
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|
| T |
40718194 |
tgattcaggtacaacgttgacgattttgccatctaatatttataataatttggaatcagccgtggcagaatctgtgaaactagagcgtgttgatgatcc |
40718292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 60 - 163
Target Start/End: Original strand, 14201301 - 14201404
Alignment:
| Q |
60 |
ttgacattagaagcatttagtgttggaaacaaaagagtagaatttggagggtcttcagaggatggtgatgaaggtaacattataattgattcaagtacaa |
159 |
Q |
| |
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||||||||||||||||||||||| ||||||||| | ||||||||||||| || || | | |||| |||| ||||||||| |||||||||| |||||| |
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| T |
14201301 |
ttgacattagaagcatttagtgtgggaaacaaattaatagaatttggaggacctacatatggtggtaatgagggtaacattttaattgattctggtacaa |
14201400 |
T |
|
| Q |
160 |
catt |
163 |
Q |
| |
|
|||| |
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|
| T |
14201401 |
catt |
14201404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 163
Target Start/End: Original strand, 14192300 - 14192404
Alignment:
| Q |
59 |
tttgacattagaagcatttagtgttggaaacaaaagagtagaatttggagggtcttcagaggatggtgatgaaggtaacattataattgattcaagtaca |
158 |
Q |
| |
|
||||||||| |||||||||||||||||||| | |||||||||| ||||||| | || | | || | |||| |||||||| ||||||||||| ||||| |
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| T |
14192300 |
tttgacattggaagcatttagtgttggaaatagaagagtagaaattggaggagttccaaatggtgataatgagggtaacatcataattgattcgggtaca |
14192399 |
T |
|
| Q |
159 |
acatt |
163 |
Q |
| |
|
||||| |
|
|
| T |
14192400 |
acatt |
14192404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 59 - 159
Target Start/End: Original strand, 34303073 - 34303173
Alignment:
| Q |
59 |
tttgacattagaagcatttagtgttggaaacaaaagagtagaatttggagggtcttcagaggatggtgatgaaggtaacattataattgattcaagtaca |
158 |
Q |
| |
|
||||||| ||||||||||||| |||||| |||||||||||||||||| |||||| ||| | | || ||| ||||||||||| |||||||||||||||||| |
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| T |
34303073 |
tttgacaatagaagcatttagcgttggagacaaaagagtagaatttgcagggtcctcaaaaggtgttgaagaaggtaacatcataattgattcaagtaca |
34303172 |
T |
|
| Q |
159 |
a |
159 |
Q |
| |
|
| |
|
|
| T |
34303173 |
a |
34303173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 108
Target Start/End: Original strand, 28403249 - 28403294
Alignment:
| Q |
63 |
acattagaagcatttagtgttggaaacaaaagagtagaatttggag |
108 |
Q |
| |
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|||||||||||||||||||| |||||||| ||| |||||| ||||| |
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| T |
28403249 |
acattagaagcatttagtgtaggaaacaatagaatagaatatggag |
28403294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 108
Target Start/End: Complemental strand, 45396236 - 45396191
Alignment:
| Q |
63 |
acattagaagcatttagtgttggaaacaaaagagtagaatttggag |
108 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||| |||||| ||||| |
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|
| T |
45396236 |
acattagaagcatttagtgtaggaaacaatagaatagaatatggag |
45396191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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