View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2466R-Insertion-11 (Length: 267)
Name: NF2466R-Insertion-11
Description: NF2466R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2466R-Insertion-11 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 11 - 267
Target Start/End: Complemental strand, 18791039 - 18790791
Alignment:
| Q |
11 |
ttttttataaaatctgatttttacgattgagtcatttagtttagacacagcgattcagtggttcgaccaatgaaccagttaaccaatatattcatcgggt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
18791039 |
ttttttataaaatctgatttttacgattgagtcatttagtttagacacagtgattc--------gaccaataaaccagttaactaatatattcatcgggt |
18790948 |
T |
|
| Q |
111 |
tgattgccggtttgattgaacatttgtgcgtgcctttgatcgcctgaaaactcaaaatatcctttccggtctttatgattcataagactcgcaacaaggt |
210 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| || |||| ||||||||| |
|
|
| T |
18790947 |
tgattgccggtctgattgaacatttatgcgtgcctttgatctcctcaaaactcaaaatatcctttccggtctttatgattcagaaaactcacaacaaggt |
18790848 |
T |
|
| Q |
211 |
ttcctttttatttttccaaaaatcatgggatcatgatcagagtgatttccatttctg |
267 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
18790847 |
ttcctttttatttctccaaaaatcatgggatcatgattagagtgatttccatttctg |
18790791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 121 - 263
Target Start/End: Complemental strand, 18782305 - 18782159
Alignment:
| Q |
121 |
tttgattgaacatttgtgcgtgcctttgatcgcctgaaaactcaaaatatccttt-ccggtctt----tatgattcataagactcgcaacaaggtttcct |
215 |
Q |
| |
|
||||||||||||||| | |||||||||||| || ||||||||||| |||||||| || || || ||| ||||| || |||| ||| ||||||||| |
|
|
| T |
18782305 |
tttgattgaacattttggggtgcctttgatctccggaaaactcaaa-tatccttttcctgtattgatttataattcagaaaactcacaagaaggtttcca |
18782207 |
T |
|
| Q |
216 |
ttttatttttccaaaaatcatgggatcatgatcagagtgatttccatt |
263 |
Q |
| |
|
|||||||| | |||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
18782206 |
ttttatttctaaaaaaatcatgggatcatgattagactgatttccatt |
18782159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University