View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2466R-Insertion-12 (Length: 305)
Name: NF2466R-Insertion-12
Description: NF2466R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2466R-Insertion-12 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 7 - 305
Target Start/End: Original strand, 2451097 - 2451393
Alignment:
| Q |
7 |
catgatgaatatattatgttaattcaattgaagtagttatttgtaaacaatgaaatgagtagacgaataatgtttatgctcactaaccatggtatgcatt |
106 |
Q |
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| T |
2451097 |
catgatgaatatattatgttaattcaattgaagtagttatttgtaaacaatgaaatgagtagacgaataatgtttatgctcactaaccatggtatgcatt |
2451196 |
T |
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| Q |
107 |
ttctaacaaatagtgtgtataaaaactaatgctatatagacttgcttatacctatggtatatatagacatggattttgagcgcccattaataaacaattc |
206 |
Q |
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| T |
2451197 |
ttctaacaaatagtgtgtataaaaactaatgctatata--cttgcttatacctatggtatatatagacatggattttgagcgcccattaataaacaattc |
2451294 |
T |
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| Q |
207 |
acgtttgttttccaatcatcttggtcttagctaggtatgaagtgaaaattggaaaacaagaacaaattttcaattgttctctcttctaaggtccctttc |
305 |
Q |
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| T |
2451295 |
acgtttgttttccaatcatcttggtcttagctaggtatgaagtgaaaattggaaaacaagaacaaattttcaattgttctctcttctaaggtccctttc |
2451393 |
T |
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Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 236 - 279
Target Start/End: Original strand, 23729998 - 23730041
Alignment:
| Q |
236 |
gctaggtatgaagtgaaaattggaaaacaagaacaaattttcaa |
279 |
Q |
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| T |
23729998 |
gctaggtatgaagtgaaaattggaaaacaagaacaaattttcaa |
23730041 |
T |
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