View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2466R-Insertion-13 (Length: 311)
Name: NF2466R-Insertion-13
Description: NF2466R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2466R-Insertion-13 |
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| [»] chr8 (3 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 9 - 311
Target Start/End: Original strand, 38120893 - 38121196
Alignment:
| Q |
9 |
agcagcacaaccaccacgtccatcaagagcagagcaggtttcttccgtggcctgaccagcagaatctgatacagtagcagctctggctccgacacccgct |
108 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38120893 |
agcagcacaaccaccacgtccatcaggagcagagcaggtttcttccgtggcctgaccagcagaatctgatacagtagcagctctggctccgacacccgct |
38120992 |
T |
|
| Q |
109 |
ccttccgatgctccttcacctcctaagatagtatcataagcagccgcaataggattgatatgcggaaaaggc-aatacacgctgtgcacaacaatcttca |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38120993 |
ccttccgatgctccttcacctcctaagatagtatcataagcagccgcaataggattgatatgcggaaaaggcaaatacacgctgtgcacaacaatcttca |
38121092 |
T |
|
| Q |
208 |
cattgcggatgacgtcagcaaccttaactctcacatagttaatcctcatcggcgctgatgtcactcctccgccggaagtagtgatcagaagcggctgacc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38121093 |
cattgcggatgacgtcagcaaccttaactctcacatagttaatcctcatcggcgctgatgtcactcctccgccggaagtagtgatcagaagcggctgacc |
38121192 |
T |
|
| Q |
308 |
tcgc |
311 |
Q |
| |
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|||| |
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| T |
38121193 |
tcgc |
38121196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 9 - 311
Target Start/End: Complemental strand, 38609230 - 38608927
Alignment:
| Q |
9 |
agcagcacaaccaccacgtccatcaagagcagagcaggtttcttccgtggcctgaccagcagaatctgatacagtagcagctctggctccgacacccgct |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||| ||| ||| | |||| |||||| ||||| ||| |
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| T |
38609230 |
agcagcacaaccaccacgtccatcaagagcagagcaggtttcttccgtcgcctgacctggagaatctaataaagttgatgctccggctccaacacctgct |
38609131 |
T |
|
| Q |
109 |
ccttccgatgctccttcacctcctaagatagtatcataagcagccgcaataggattgatatgcggaaaaggcaa-tacacgctgtgcacaacaatcttca |
207 |
Q |
| |
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|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||| |
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| T |
38609130 |
ccttccgacgctccttcacctcctaatatagtatcataagcagccgcaataggattgatatgcggaaaaggcaaatacacactgtgcacaactatcttca |
38609031 |
T |
|
| Q |
208 |
cattgcggatgacgtcagcaaccttaactctcacatagttaatcctcatcggcgctgatgtcactcctccgccggaagtagtgatcagaagcggctgacc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38609030 |
cattgcggatgacgtcagcaaccttaactctcacatagttaatcctcatcggcgctgatgtcactcctccgccggaagtagtgatcagaagcggctgacc |
38608931 |
T |
|
| Q |
308 |
tcgc |
311 |
Q |
| |
|
|||| |
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|
| T |
38608930 |
tcgc |
38608927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 9 - 311
Target Start/End: Complemental strand, 38794013 - 38793710
Alignment:
| Q |
9 |
agcagcacaaccaccacgtccatcaagagcagagcaggtttcttccgtggcctgaccagcagaatctgatacagtagcagctctggctccgacacccgct |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||| ||| ||| | |||| |||||| ||||| ||| |
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|
| T |
38794013 |
agcagcacaaccaccacgtccatcaagagcagagcaggtttcttccgtcgcctgacctggagaatctaataaagttgatgctccggctccaacacctgct |
38793914 |
T |
|
| Q |
109 |
ccttccgatgctccttcacctcctaagatagtatcataagcagccgcaataggattgatatgcggaaaaggcaa-tacacgctgtgcacaacaatcttca |
207 |
Q |
| |
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|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||| |
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| T |
38793913 |
ccttccgacgctccttcacctcctaatatagtatcataagcagccgcaataggattgatatgcggaaaaggcaaatacacactgtgcacaactatcttca |
38793814 |
T |
|
| Q |
208 |
cattgcggatgacgtcagcaaccttaactctcacatagttaatcctcatcggcgctgatgtcactcctccgccggaagtagtgatcagaagcggctgacc |
307 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38793813 |
cattgcggatgacgtcagcaaccttaactctcacatagttaatcctcatcggcgctgatgtcactcctccgccggaagtagtgatcagaagcggctgacc |
38793714 |
T |
|
| Q |
308 |
tcgc |
311 |
Q |
| |
|
|||| |
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|
| T |
38793713 |
tcgc |
38793710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 9 - 311
Target Start/End: Original strand, 28730467 - 28730770
Alignment:
| Q |
9 |
agcagcacaaccaccacgtccatcaagagcagagcaggtttcttccgtggcctgaccagcagaatctgatacagtagcagctctggctccgacacccgct |
108 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
28730467 |
agcagcacagccaccacgcccatcaagagcagagcaggtttcttcagtcgcctgaccagcagaatctgatacagtagcagctctggctccgacacctgct |
28730566 |
T |
|
| Q |
109 |
ccttccgatgctccttcacctcctaagatagtatcataagcagccgcaataggattgatatgcggaaaaggc-aatacacgctgtgcacaacaatcttca |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| || |||||||| ||||||| |
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|
| T |
28730567 |
ccttccgatgctccttcacctcctaagatagtatcataagcatccgcaataggattgatatgcggaaaaggcaaatacacactatgcacaactatcttca |
28730666 |
T |
|
| Q |
208 |
cattgcggatgacgtcagcaaccttaactctcacatagttaatcctcatcggcgctgatgtcactcctccgccggaagtagtgatcagaagcggctgacc |
307 |
Q |
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|||| |||||||||||||||||||| || || |||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
28730667 |
cattacggatgacgtcagcaaccttcaccctaacatagttaatcctcatcggtgctaatgtcactcctccaccggaagtagtgatcagaagcggctgacc |
28730766 |
T |
|
| Q |
308 |
tcgc |
311 |
Q |
| |
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|||| |
|
|
| T |
28730767 |
tcgc |
28730770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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