View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2466R-Insertion-14 (Length: 316)
Name: NF2466R-Insertion-14
Description: NF2466R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2466R-Insertion-14 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 9 - 316
Target Start/End: Original strand, 31339964 - 31340271
Alignment:
| Q |
9 |
gttcatattgatgattatctgctttcatatgatttagaataaataaattttcctattgaaatgtaataagtgatgtttgcatatgaatatatgtgatata |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31339964 |
gttcatattgatgattatctgctttcatatgatttagaataaataaattttcctattgaaatgtaataagtgatgtttgcatatgaatatatgtgatata |
31340063 |
T |
|
| Q |
109 |
agcatgttattattgttacatatgttggattatgtgtaaattgttgtatgttcatatgttaagttgacaatgcatgttcatgcatatcatatatagttac |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31340064 |
agcatgttattattgttacatatgttggattatgtgtaaattgttgtatgttcatatgttaagttgacaatgcatgttcatgcatatcatatatagttac |
31340163 |
T |
|
| Q |
209 |
atttttcttttgaagaaacatatcatagttacatggtgactatgatgggtgatgtggtgaggtttccggtgatagggacccatctaaattctacaaaatt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31340164 |
atttttcttttgaagaaacatatcatagttacatggtgactatgatgggtgatgtggtgaggtttccggtgatagggacccatctaaattctacaaaatt |
31340263 |
T |
|
| Q |
309 |
ttattgag |
316 |
Q |
| |
|
|||||||| |
|
|
| T |
31340264 |
ttattgag |
31340271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University