View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2466R-Insertion-17 (Length: 465)
Name: NF2466R-Insertion-17
Description: NF2466R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2466R-Insertion-17 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 8 - 462
Target Start/End: Original strand, 28654939 - 28655402
Alignment:
| Q |
8 |
atgttgtgtcaaatgaaatcacatctccaaacaaagagtaattatccgacaaatgcaataaatccaaaatacatatttaagtttcccttcactatcagac |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
28654939 |
atgttgtgtcaaatgaaatcacatctccaaacaaagagtaattatccgacaaatgcaataaatccaaaatacatatttaagtttcccttcactatcaaac |
28655038 |
T |
|
| Q |
108 |
tcataatcatagaaaaacgaatgcttcatcttatgatttcttctaaacttatcaataaacatatttacattc----ctttgatcaattctttcatataca |
203 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||| ||| | ||||| |
|
|
| T |
28655039 |
tcataatcatagaaaaatgaatgtttcatcttatgttttcttctaaacttatcaataagcatatttacatcagagtctttgatcaatttttttaaataca |
28655138 |
T |
|
| Q |
204 |
ttgaataattttgaaaatctct--gtgtgcaacatatatcgtcataactcccaacccgctcattcactaattgataagcttttgaagtctccacat--gc |
299 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
28655139 |
ttgaataattttgaaaatctctttgtgtgcatcatatatcgtcataactcccaactcgctcattcactaattgataagcttttgaagtctccacattagc |
28655238 |
T |
|
| Q |
300 |
tctactgggagaaaacaataaattttaatgagcactgttttcactccttgtcgatcttgacattgtttccttctaggtgtgacaa-tgtatgtgaatgac |
398 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||| | |
|
|
| T |
28655239 |
tctactgcgagaaaacaataaattctaatgagcactgttttcattccttgccgatcttgacattgtttccttctaggtgtgacaagtgtatgtgaatggc |
28655338 |
T |
|
| Q |
399 |
cttcataaaattttgagacatcatatttactctcaatagttcttttgaatacaatctttgcatt |
462 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| ||||| |||| |||||||||||||| |
|
|
| T |
28655339 |
cttcataaaattttgagacgtcatatttactctcaataattcttctgaaaacaatctttgcatt |
28655402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 11 - 465
Target Start/End: Complemental strand, 28653222 - 28652756
Alignment:
| Q |
11 |
ttgtgtcaaatgaaatcacatctccaaacaaagagtaattatccgacaaatgcaataaatccaaaatacatatttaagtttcccttcactatcagactca |
110 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| ||||||||||| || || |||||||||||||| | |||||| ||| || ||||| | |
|
|
| T |
28653222 |
ttgtgtcaaatgaaatcatatctccaaacaaagagtaattttccgacaaatgtcatcaactcaaaatacatatttcattttcccatcatcattagactaa |
28653123 |
T |
|
| Q |
111 |
taatcatagaaaaacgaatgcttcatcttatgatttcttctaaacttatcaataaacatatttacatt----cctttgatcaattctttcatatacattg |
206 |
Q |
| |
|
|||| ||||||||| ||||| ||||| | ||| | ||||||||| |||||||||||||||| | |||| |||| | || |||||| || | ||| |
|
|
| T |
28653122 |
taataatagaaaaatgaatgattcatttcatgttatcttctaaaattatcaataaacatatatgcattagagtctttaaccagttctttttaatcccttg |
28653023 |
T |
|
| Q |
207 |
aataattttgaaaatctc--tgtgtgcaacatatatcgtcataactcccaacccgctcattcactaattgataagcttttgaagtctccacat--gctct |
302 |
Q |
| |
|
|||||||||||||||||| |||||||| | ||||| |||||||||| |||| ||||| || | |||||||||| ||||||| ||| | ||| | ||| |
|
|
| T |
28653022 |
aataattttgaaaatctctatgtgtgcatcctatatggtcataactctcaactcgctcctttagtaattgataaacttttgatgtcctcgcattagttct |
28652923 |
T |
|
| Q |
303 |
actgggagaaaacaataaattttaatgagcactgttttcactccttgtcgatcttgac-attgtttccttctaggtgtgacaa-tgtatgtgaatgacct |
400 |
Q |
| |
|
| || || ||| |||||||| || | || ||||| ||||||||||||||||| || |||||||| | ||||||||||||| ||||||||||||| || |
|
|
| T |
28652922 |
attgtaaggaaataataaattcatattaacaatgtttacactccttgtcgatcttaacaattgtttcttcctaggtgtgacaagtgtatgtgaatgaact |
28652823 |
T |
|
| Q |
401 |
tcataaa--attttgagacatcatatttactctcaatagttcttttgaatacaatctttgcattaca |
465 |
Q |
| |
|
||||||| |||| |||| |||| ||||| | |||| |||||||||| |||||| || ||||||| |
|
|
| T |
28652822 |
tcataaatttttttaagacttcatgtttacccccaatgcttcttttgaaaacaatccttacattaca |
28652756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 8 - 465
Target Start/End: Original strand, 12298736 - 12299204
Alignment:
| Q |
8 |
atgttgtgtcaaatgaaatcacatctccaaacaaagagtaattatc-cgacaaatgcaataaatccaaaatacatatttaagtttcccttcactatcaga |
106 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||| ||||| | |||| ||||| || | |||||| |||||||| | |||||| || |||||| |
|
|
| T |
12298736 |
atgtagtgtcaaatgaaactacatctccaaacaaagaataattttttcgactaatgccatcagcccaaaacacatattttaacttccctacattatcagt |
12298835 |
T |
|
| Q |
107 |
ctcataatcatagaaaaacgaatgcttcatcttatgatttcttctaaacttatcaataaacatatttacattc----ctttgatcaattctttcatatac |
202 |
Q |
| |
|
| |||| |||||||| || |||| || || | ||| |||||| |||| || ||||| ||||||||| |||| ||||||||||||||||||||| | |
|
|
| T |
12298836 |
cacatactcatagaagaatgaattattaatttcatgttttcttttaaaattttcaatgaacatatttgcatttgaatctttgatcaattctttcatattc |
12298935 |
T |
|
| Q |
203 |
attgaataattttgaaaatctct--gtgtgcaacatatatcgtcataactcccaacccgctcattcactaattgataagcttttgaagtctccacat--g |
298 |
Q |
| |
|
||||| | ||||| |||||||| ||||||| | ||||| |||||||||||||| ||| |||| || |||||| |||| ||||| ||| || | |
|
|
| T |
12298936 |
cttgaaaatttttgtaaatctctttgtgtgcatcctatattttcataactcccaacttactccttcaatatttgatagcctttcgaagtgcccatattag |
12299035 |
T |
|
| Q |
299 |
ctctactgggagaaaacaataaattttaatgagcactgttttcactccttgtcgatcttgacat-tgtttccttctaggtgtgacaa-tgtatgtgaatg |
396 |
Q |
| |
|
||||| || || |||||||||||||| |||| || |||| |||||||| || ||| | | |||||| ||||||||| ||||| ||| |||||||| |
|
|
| T |
12299036 |
ctctattgcaagcaaacaataaatttttatgaacattgttgacactccttacagaccttaataactgtttctttctaggtgagacaagtgtgtgtgaatg |
12299135 |
T |
|
| Q |
397 |
accttcataaaattttgagacatcatatttactctcaatagttcttttgaatacaatctttgcattaca |
465 |
Q |
| |
|
||| ||||||||||| |||| ||| |||||| |||| |||||| ||||| |||||| |||| ||||| |
|
|
| T |
12299136 |
accatcataaaatttggagatttcaaatttaccctcatcagttctcttgaacacaatccttgctttaca |
12299204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 8 - 297
Target Start/End: Complemental strand, 2203014 - 2202718
Alignment:
| Q |
8 |
atgttgtgtcaaatgaaatcacatctccaaacaaagagtaa-ttatccgacaaatgcaataaatccaaaatacatatttaagtttcccttcactatcaga |
106 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| || | |||||||| | || | |||||| |||| ||| | |||||||||| | |||| |
|
|
| T |
2203014 |
atgttgtgtcaaatgaaaccacatctccaaacaaagagtaattttttcgacaaattccatcagcccaaaacacatgtttcaatttcccttcattgtcagc |
2202915 |
T |
|
| Q |
107 |
ctcataatcatagaaaaacgaatgcttcatcttatgatttcttctaaacttatcaataaacatatttacat----tcctttgatcaattctttcatatac |
202 |
Q |
| |
|
|||||||||||||| || ||| | || |||| | ||||||||||| |||||||| ||||||| | ||| |||||||||||||||||| || |
|
|
| T |
2202914 |
ttcataatcatagaagaatgaagggtttatctcccgttttcttctaaaattatcaatgaacatatctgcatcagagtctttgatcaattctttcaaattt |
2202815 |
T |
|
| Q |
203 |
attgaataattttgaaaatctc--tgtgtgcaacatatatcgtcataactcccaacccgctcattcactaattgataagcttttgaagtctccacat |
297 |
Q |
| |
|
||||||| ||||| ||||||| |||||||| | ||||| |||||||| || ||| |||| |||| || ||||||| |||||||||| |||||| |
|
|
| T |
2202814 |
cttgaatagttttgcaaatctctttgtgtgcatcctatattttcataacttccgacctgctccttcattatttgataactttttgaagtccccacat |
2202718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 388 - 441
Target Start/End: Complemental strand, 2202623 - 2202570
Alignment:
| Q |
388 |
atgtgaatgaccttcataaaattttgagacatcatatttactctcaatagttct |
441 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||||| ||||||||||| |
|
|
| T |
2202623 |
atgtgaatgaccttcataaaagtttgagacttcatatttaccatcaatagttct |
2202570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 8 - 297
Target Start/End: Complemental strand, 18860121 - 18859824
Alignment:
| Q |
8 |
atgttgtgtcaaatgaaatcacatctccaaacaaagagtaattatc-cgacaaatgcaataaatccaaaatacatatttaagtttcccttcactatcaga |
106 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| | |||||||| | || | |||||| |||| ||| | ||||||||| | |||| |
|
|
| T |
18860121 |
atgttgtgtcaaatgaaaccacatctccaaacaaagagtaattttttcgacaaattccatcagcccaaaacacatgtttcaacttcccttcattgtcagc |
18860022 |
T |
|
| Q |
107 |
ctcataatcatagaaaaacgaatgcttcatcttatgatttcttctaaacttatcaataaacatatttacat-----tcctttgatcaattctttcatata |
201 |
Q |
| |
|
|||||||||||||| || ||| | || |||| | ||||||||||| |||||||| ||||||||| ||| || || |||||||||||||| || |
|
|
| T |
18860021 |
ttcataatcatagaagaatgaagggtttatctcccgttttcttctaaaattatcaatgaacatatttgcatcagagtctttggatcaattctttcaaatt |
18859922 |
T |
|
| Q |
202 |
cattgaataattttgaaaatctc--tgtgtgcaacatatatcgtcataactcccaacccgctcattcactaattgataagcttttgaagtctccacat |
297 |
Q |
| |
|
||||||| ||||| ||||||| |||||||| | ||||| |||||||| || ||| |||| |||| || ||||||| |||||||||| |||||| |
|
|
| T |
18859921 |
tcttgaatagttttgcaaatctctttgtgtgcatcctatattttcataacttccgacctgctccttcattatttgataactttttgaagtccccacat |
18859824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 388 - 441
Target Start/End: Complemental strand, 18859729 - 18859676
Alignment:
| Q |
388 |
atgtgaatgaccttcataaaattttgagacatcatatttactctcaatagttct |
441 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||||| ||||||||||| |
|
|
| T |
18859729 |
atgtgaatgaccttcataaaagtttgagacttcatatttaccatcaatagttct |
18859676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 8 - 297
Target Start/End: Complemental strand, 24319185 - 24318888
Alignment:
| Q |
8 |
atgttgtgtcaaatgaaatcacatctccaaacaaagagtaattatc-cgacaaatgcaataaatccaaaatacatatttaagtttcccttcactatcaga |
106 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| | |||||||| | || | |||||| |||| ||| | ||||||||| | |||| |
|
|
| T |
24319185 |
atgttgtgtcaaatgaaaccacatctccaaacaaagagtaattttttcgacaaattccatcagcccaaaacacatgtttcaacttcccttcattgtcagc |
24319086 |
T |
|
| Q |
107 |
ctcataatcatagaaaaacgaatgcttcatcttatgatttcttctaaacttatcaataaacatatttacat-----tcctttgatcaattctttcatata |
201 |
Q |
| |
|
|||||||||||||| || ||| | || |||| | ||||||||||| |||||||| ||||||||| ||| || || |||||||||||||| || |
|
|
| T |
24319085 |
ttcataatcatagaagaatgaagggtttatctcccgttttcttctaaaattatcaatgaacatatttgcatcagagtctttggatcaattctttcaaatt |
24318986 |
T |
|
| Q |
202 |
cattgaataattttgaaaatctc--tgtgtgcaacatatatcgtcataactcccaacccgctcattcactaattgataagcttttgaagtctccacat |
297 |
Q |
| |
|
||||||| ||||| ||||||| |||||||| | ||||| |||||||| || ||| |||| |||| || ||||||| |||||||||| |||||| |
|
|
| T |
24318985 |
tcttgaatagttttgcaaatctctttgtgtgcatcctatattttcataacttccgacctgctccttcattatttgataactttttgaagtccccacat |
24318888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 388 - 441
Target Start/End: Complemental strand, 24318793 - 24318740
Alignment:
| Q |
388 |
atgtgaatgaccttcataaaattttgagacatcatatttactctcaatagttct |
441 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||||| ||||||||||| |
|
|
| T |
24318793 |
atgtgaatgaccttcataaaagtttgagacttcatatttaccatcaatagttct |
24318740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 8 - 297
Target Start/End: Original strand, 15898011 - 15898307
Alignment:
| Q |
8 |
atgttgtgtcaaatgaaatcacatctccaaacaaagagtaattatc-cgacaaatgcaataaatccaaaatacatatttaagtttcccttcactatcaga |
106 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||||||| | |||||||| | || | |||||| |||| ||| | ||||||||| | |||| |
|
|
| T |
15898011 |
atgttgtgtcaaatgaaaccacatttccaaacaaagagtaattttttcgacaaattccatcagcccaaaacacatgtttcaacttcccttcattgtcagc |
15898110 |
T |
|
| Q |
107 |
ctcataatcatagaaaaacgaatgcttcatcttatgatttcttctaaacttatcaataaacatatttacat----tcctttgatcaattctttcatatac |
202 |
Q |
| |
|
|||||||||||||| || ||| | || |||| | ||||||||||| |||||||| ||||||| | ||| |||||||||||||||||| || |
|
|
| T |
15898111 |
ttcataatcatagaagaatgaagggtttatctctcgttttcttctaaaattatcaatgaacatatctgcatcagagtctttgatcaattctttcaaattt |
15898210 |
T |
|
| Q |
203 |
attgaataattttgaaaatctc--tgtgtgcaacatatatcgtcataactcccaacccgctcattcactaattgataagcttttgaagtctccacat |
297 |
Q |
| |
|
||||||| ||||| ||||||| |||||||| | ||||| |||||||| || ||| | || |||| || ||||||| |||||||||| |||||| |
|
|
| T |
15898211 |
cttgaatagttttgcaaatctctttgtgtgcatcctatattttcataacttccgacctggtccttcattatttgataactttttgaagtccccacat |
15898307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 388 - 441
Target Start/End: Original strand, 15898402 - 15898455
Alignment:
| Q |
388 |
atgtgaatgaccttcataaaattttgagacatcatatttactctcaatagttct |
441 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||||| ||||||||||| |
|
|
| T |
15898402 |
atgtgaatgaccttcataaaagtttgagacttcatatttaccatcaatagttct |
15898455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 8 - 171
Target Start/End: Original strand, 25904383 - 25904547
Alignment:
| Q |
8 |
atgttgtgtcaaatgaaatcacatctccaaacaaagagtaa-ttatccgacaaatgcaataaatccaaaatacatatttaagtttcccttcactatcaga |
106 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||||||| || | |||||||| | || | |||||| |||| ||| || ||||||| || |||| |
|
|
| T |
25904383 |
atgttgtatcaaatgaaaccacatctccaaacaaagagtaattttttcgacaaattccatcagcccaaaacacatttttcagcttccctttaccatcaac |
25904482 |
T |
|
| Q |
107 |
ctcataatcatagaaaaacgaatgcttcatcttatgatttcttctaaacttatcaataaacatat |
171 |
Q |
| |
|
|| |||||||||||||| ||| | || |||| | ||||||||||| |||||||||||||||| |
|
|
| T |
25904483 |
ttcttaatcatagaaaaatgaagggtttatctcccgttttcttctaaaattatcaataaacatat |
25904547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 388 - 465
Target Start/End: Original strand, 25904751 - 25904828
Alignment:
| Q |
388 |
atgtgaatgaccttcataaaattttgagacatcatatttactctcaatagttcttttgaatacaatctttgcattaca |
465 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||| |||||| ||||||||||| ||||| ||||| |||||||||| |
|
|
| T |
25904751 |
atgtgaatgaccttcataaaactttgagacttcaaatttaccatcaatagttctcttgaaaacaattcttgcattaca |
25904828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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