View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2466R-Insertion-18 (Length: 434)
Name: NF2466R-Insertion-18
Description: NF2466R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2466R-Insertion-18 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 9 - 434
Target Start/End: Original strand, 3731457 - 3731880
Alignment:
| Q |
9 |
aatcacacattaaaatagcagtcatgtcacatatatccaaatcatctgctcatgagctatgatcaacaaaaagtacctcaggataataactgctatcaat |
108 |
Q |
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| T |
3731457 |
aatcacacattaa--tagcattcatgtcacatatatccaaatcatctgctcatgagctatgatcaacaaaaagtacctcaggataataactgctatcaat |
3731554 |
T |
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| Q |
109 |
cttctgaatttccatgaagatgtaccttgcaggctttgagaaattagacattccctagaagaataatacaaccacataaccaaatcagcattaatagacc |
208 |
Q |
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| T |
3731555 |
cttctgaatttccatgaagatgtaccttgcaggctttgagaaattagacattccctagaagaataatacaaccacataaccaaatcagcattattagact |
3731654 |
T |
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| Q |
209 |
atatgataaattatgaaacactgaaaaatttgcttactactccattgacatccaagatacttgtggtggaagctatgtgtcttttagctgctaatgaaca |
308 |
Q |
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| T |
3731655 |
atatgataaattatgaaacactgaaaaatttgcttactactccattgacatccaagatacttgtggtggaagctatgtgtcttttagctgctaacgaaca |
3731754 |
T |
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| Q |
309 |
tgcagggtatcttactcttagtgttttctcttgttttgacacatgatgcttgataagcctttcttatgtggttatttgccacagtttgttaatatctatc |
408 |
Q |
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| T |
3731755 |
tgcagggtatctaactcttagtgttttctcttgttctgacacatgatgcttgataagcctttcttgtgtggttatttgccacagtttgttaatatctatc |
3731854 |
T |
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| Q |
409 |
atcccaattctctcaatatacacagg |
434 |
Q |
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| T |
3731855 |
atcccaattctctcaatatacacagg |
3731880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 40 - 433
Target Start/End: Original strand, 11683800 - 11684197
Alignment:
| Q |
40 |
tatatccaaatcatctgctcatgagctatgatcaacaaaaagtacctcaggataataactgctatcaatcttctgaatttccatgaagatgtaccttgca |
139 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11683800 |
tataaccaaatcatctgctcatgagctatgatcaacaaaaagtacctcaggataataattgctatcaatcttctgaatttccatgaagatttaccttgca |
11683899 |
T |
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| Q |
140 |
ggctttgagaaattagacattccctagaagaataatacaaccacataaccaaatcagcattaatagaccatatgataaattatgaaacact----gaaaa |
235 |
Q |
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| T |
11683900 |
ggctctgagaaattagacattccctagaagaataatacaatcacataacaaaatcagcattattagaccatatagtaaattatgaaacactatatgaaaa |
11683999 |
T |
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| Q |
236 |
atttgcttactactccattgacatccaagatacttgtggtggaagctatgtgtcttttagctgctaatgaacatgcagggtatcttactcttagtgtttt |
335 |
Q |
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| T |
11684000 |
atttgcttactactccattgccatccaagatacttgtggtggatgctatgtgtcttttggctgctaatgaacatgcagggtatcttactcttagggtttt |
11684099 |
T |
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| Q |
336 |
ctcttgttttgacacatgatgcttgataagcctttcttatgtggttatttgccacagtttgttaatatctatcatcccaattctctcaatatacacag |
433 |
Q |
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| T |
11684100 |
ctcttgttctgacacatgatgcttgataagcctttcttgtgtggttatttgccacagtttgttaacatctatcatcccaattctctcgatatacacag |
11684197 |
T |
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