View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2466R-Insertion-20 (Length: 570)
Name: NF2466R-Insertion-20
Description: NF2466R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2466R-Insertion-20 |
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| [»] scaffold0043 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 9 - 287
Target Start/End: Complemental strand, 19295367 - 19295089
Alignment:
| Q |
9 |
agtggcctgataaccattttgacatatcccaaactattattatatcaacatcttaaatatgttttcttatattttcttattgacatgatcgatatttaat |
108 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
19295367 |
agtggcccgataaccattttgacatatcccaaactattattatatcaacatcttaaacatgttttcttatattttcttattgacatgatcgatatttaat |
19295268 |
T |
|
| Q |
109 |
caattttgtgctgcagacatatcatcatnnnnnnngacgtcttactttgcggtccatgatagctgttcagaattatgagatattaggaatacttccacaa |
208 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
19295267 |
caattttgtgctgcagacatatcatcataaaaaaagacgtcttactttgcggtccatgatagctgttcagaattatgagattttaggaatacttccacaa |
19295168 |
T |
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| Q |
209 |
cgtaaaagaaaaacggaagtaaaaggaaaaggagttatcattgctgacgttgaaaacaacgtgagtacactctttttga |
287 |
Q |
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| T |
19295167 |
cgtaaaagaaaaacggaagtaaaaggaaaaggagttatcattgctgacgttgaaaacaacgtgagtacactctttttga |
19295089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 320 - 566
Target Start/End: Complemental strand, 19295012 - 19294763
Alignment:
| Q |
320 |
accaaatgtttaaacattttagttacgataaatacaatgtaaaattatatgtacttaattattaatgtannnnnnnn--aaatgcaagtctttctttatt |
417 |
Q |
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||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
19295012 |
accaaatgtttaaccattttagttacaataaatacaatgtaaaattatatgtacttaattactaatgtattttttttttaaatgcaagtctttctttata |
19294913 |
T |
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| Q |
418 |
aaacatgctttcttatagttgcannnnnnnagtgctttatagtatattggcttgttgggttcaannnnnnn-aattatagttacaacttgttgtgaatca |
516 |
Q |
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| T |
19294912 |
aaacatgctttcttatagttgcatttttttagtgctttatagtatattggcttgttaggttcaattttttttaattatagttacaactttttgtgaatca |
19294813 |
T |
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| Q |
517 |
tggattgaagcacatttatgtagcctctggtgtggatgttcttgttaatt |
566 |
Q |
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| T |
19294812 |
tggattgaagcacatttatgtagcctctggtgtggatgttgttgttaatt |
19294763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 39 - 302
Target Start/End: Complemental strand, 18518697 - 18518426
Alignment:
| Q |
39 |
aaactattattatatcaacatcttaaatatgttttcttatattttcttattgacatgatcgatatttaatcaattttgtgctgcagacatatcatcatnn |
138 |
Q |
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| T |
18518697 |
aaactattattatatcaacatcttaaacatgtcttcttatattttattattgacatgatcaatatttaattaatgttgtgttgcagacatatcatcataa |
18518598 |
T |
|
| Q |
139 |
nnnnngacgtcttactttgcggtccatgatagctgttcagaattatgagatattaggaatacttccacaacgtaaaagaaaaacggaagtaaaaggaaaa |
238 |
Q |
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|| |||||||| |||||||||| ||| ||| ||| |||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
18518597 |
agagagaaagcttactttccggtccatgaaagccgttaagagatatgagattttaggaatacttccacaacgtaaaaggaaaacggaagtaaaacgaaaa |
18518498 |
T |
|
| Q |
239 |
ggagttatcattgct---gacgttgaaaacaacgtgagtacactcttt-----ttgatatgcaatgttttac |
302 |
Q |
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| T |
18518497 |
ggagttatcattactgtcgaccatgaaatcaacgtgagtacactctttttaaattgatatgcaatgttttac |
18518426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 16213166 - 16213221
Alignment:
| Q |
18 |
ataaccattttgacatatcccaaactattattatatcaacatcttaaatatgtttt |
73 |
Q |
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|||||||||||||||||||| |||||||| ||||||||||||||| || ||||||| |
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| T |
16213166 |
ataaccattttgacatatcctaaactattgttatatcaacatcttgaaaatgtttt |
16213221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 135
Target Start/End: Original strand, 19206448 - 19206567
Alignment:
| Q |
21 |
accattttgacatatcccaaactattattatatcaacatc-ttaaatatgttttcttatattttcttattgacatgatcgatatttaatcaatt----tt |
115 |
Q |
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||||||||||||| ||| ||||||||||||| |||||||| || || | || ||||||||||||||| ||| || ||| ||||||||| |||| || |
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| T |
19206448 |
accattttgacatgtcctaaactattattatgtcaacatctttgaacacgtcttcttatattttcttgctgagattatcaatatttaattaattaatatt |
19206547 |
T |
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| Q |
116 |
gtgctgcagacatatcatca |
135 |
Q |
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| T |
19206548 |
gtgttgcagaaatatcatca |
19206567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 489 - 566
Target Start/End: Original strand, 19209034 - 19209111
Alignment:
| Q |
489 |
aattatagttacaacttgttgtgaatcatggattgaagcacatttatgtagcctctggtgtggatgttcttgttaatt |
566 |
Q |
| |
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||||||||||||||||| |||||||||||||| ||||| ||||| | ||||||||| || || |||| ||| ||||| |
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| T |
19209034 |
aattatagttacaacttattgtgaatcatggactgaagtgcatttctatagcctctgatgcggttgttgttgctaatt |
19209111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 126; Significance: 1e-64; HSPs: 2)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 18 - 302
Target Start/End: Complemental strand, 20877 - 20585
Alignment:
| Q |
18 |
ataaccattttgacatatcccaaactattattatatcaacatcttaaatatgttttcttatattttcttattgacatgatcgatatttaatcaattttgt |
117 |
Q |
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||||||| |||||||| || ||||||||||||||| ||||||||||| |||| ||||||| ||||||||||||||||||| ||||||||| | | |||| |
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| T |
20877 |
ataaccactttgacatgaccaaaactattattatattaacatcttaaacatgtcttcttatgttttcttattgacatgatcaatatttaattattgttgt |
20778 |
T |
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| Q |
118 |
gctgcagacatatcatcatnnnnnnngacgtcttactttgcggtccatgatagctgttcagaattatgagatattaggaatacttccacaacgtaaaaga |
217 |
Q |
| |
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| T |
20777 |
gttgcagacatatcatcataaaaagagaaagcttacttttcggtccatgaaagctgttgagagatatgagattttaggaatacttccacaacgtaaaagg |
20678 |
T |
|
| Q |
218 |
aaaacggaagtaaaaggaaaaggagttatcattgctg---acgttgaaaacaacgtgagtacactcttt-----ttgatatgcaatgttttac |
302 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||| || ||||| || |||||||||||||||| ||||||||||||||||||| |
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| T |
20677 |
aaaacggaagtaaaaggaaaaggagttatcattactgccaacaatgaaatcatcgtgagtacactctttttaaattgatatgcaatgttttac |
20585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 18 - 302
Target Start/End: Complemental strand, 35934 - 35642
Alignment:
| Q |
18 |
ataaccattttgacatatcccaaactattattatatcaacatcttaaatatgttttcttatattttcttattgacatgatcgatatttaatcaattttgt |
117 |
Q |
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||||||| |||||||| || | ||||||||||||| ||||||||||| |||| ||||||| |||||||||||| ||||| ||||||||| | | |||| |
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| T |
35934 |
ataaccactttgacatgaccaagactattattatattaacatcttaaacatgtcttcttatgttttcttattgaaatgattaatatttaattattgttgt |
35835 |
T |
|
| Q |
118 |
gctgcagacatatcatcatnnnnnnngacgtcttactttgcggtccatgatagctgttcagaattatgagatattaggaatacttccacaacgtaaaaga |
217 |
Q |
| |
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| ||||||||||||||||| || |||||||| || ||||||| ||||||| ||| |||||||| |||||||||||||||||||||||||| |
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| T |
35834 |
gttgcagacatatcatcataaaatgagaaagcttacttttcgatccatgaaagctgttgagagatatgagattttaggaatacttccacaacgtaaaagg |
35735 |
T |
|
| Q |
218 |
aaaacggaagtaaaaggaaaaggagttatcattgctg---acgttgaaaacaacgtgagtacactcttt-----ttgatatgcaatgttttac |
302 |
Q |
| |
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|||||| |||||||||||||||||||||||||| ||| || ||||| || |||||||||||||||| ||||||||||||||||||| |
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| T |
35734 |
aaaacgtaagtaaaaggaaaaggagttatcattactgccaacaatgaaatcatcgtgagtacactctttttaaattgatatgcaatgttttac |
35642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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