View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2466R-Insertion-7 (Length: 155)

Name: NF2466R-Insertion-7
Description: NF2466R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2466R-Insertion-7
NF2466R-Insertion-7
[»] chr5 (7 HSPs)
chr5 (10-155)||(33063087-33063232)
chr5 (10-155)||(33064182-33064327)
chr5 (10-155)||(33065268-33065413)
chr5 (10-155)||(33066342-33066487)
chr5 (10-155)||(33067428-33067573)
chr5 (10-155)||(33068480-33068625)
chr5 (10-155)||(33069566-33069711)


Alignment Details
Target: chr5 (Bit Score: 142; Significance: 7e-75; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 142; E-Value: 7e-75
Query Start/End: Original strand, 10 - 155
Target Start/End: Original strand, 33063087 - 33063232
Alignment:
Q  10 caacatccttgacaaacactaacagattttgtttatctcctttatacactatttgaactttgattttctgagcaatgtgaaggttgaaatccatagttgt 109  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33063087 caacatccttgacaaacactaacagattttgttcatctcctttatacactatttgaactttgattttctgagcaatgtgaaggttgaaatccatagttgt 33063186  T
Q  110 agtaatatttgggaataatgaatctctgaatacgctaacatacgtg 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  33063187 agtaatatttgggaataatgaatctctgaatacgctaacatacgtg 33063232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 142; E-Value: 7e-75
Query Start/End: Original strand, 10 - 155
Target Start/End: Original strand, 33064182 - 33064327
Alignment:
Q  10 caacatccttgacaaacactaacagattttgtttatctcctttatacactatttgaactttgattttctgagcaatgtgaaggttgaaatccatagttgt 109  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33064182 caacatccttgacaaacactaacagattttgttcatctcctttatacactatttgaactttgattttctgagcaatgtgaaggttgaaatccatagttgt 33064281  T
Q  110 agtaatatttgggaataatgaatctctgaatacgctaacatacgtg 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  33064282 agtaatatttgggaataatgaatctctgaatacgctaacatacgtg 33064327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 142; E-Value: 7e-75
Query Start/End: Original strand, 10 - 155
Target Start/End: Original strand, 33065268 - 33065413
Alignment:
Q  10 caacatccttgacaaacactaacagattttgtttatctcctttatacactatttgaactttgattttctgagcaatgtgaaggttgaaatccatagttgt 109  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33065268 caacatccttgacaaacactaacagattttgttcatctcctttatacactatttgaactttgattttctgagcaatgtgaaggttgaaatccatagttgt 33065367  T
Q  110 agtaatatttgggaataatgaatctctgaatacgctaacatacgtg 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  33065368 agtaatatttgggaataatgaatctctgaatacgctaacatacgtg 33065413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 142; E-Value: 7e-75
Query Start/End: Original strand, 10 - 155
Target Start/End: Original strand, 33066342 - 33066487
Alignment:
Q  10 caacatccttgacaaacactaacagattttgtttatctcctttatacactatttgaactttgattttctgagcaatgtgaaggttgaaatccatagttgt 109  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33066342 caacatccttgacaaacactaacagattttgttcatctcctttatacactatttgaactttgattttctgagcaatgtgaaggttgaaatccatagttgt 33066441  T
Q  110 agtaatatttgggaataatgaatctctgaatacgctaacatacgtg 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  33066442 agtaatatttgggaataatgaatctctgaatacgctaacatacgtg 33066487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 142; E-Value: 7e-75
Query Start/End: Original strand, 10 - 155
Target Start/End: Original strand, 33067428 - 33067573
Alignment:
Q  10 caacatccttgacaaacactaacagattttgtttatctcctttatacactatttgaactttgattttctgagcaatgtgaaggttgaaatccatagttgt 109  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33067428 caacatccttgacaaacactaacagattttgttcatctcctttatacactatttgaactttgattttctgagcaatgtgaaggttgaaatccatagttgt 33067527  T
Q  110 agtaatatttgggaataatgaatctctgaatacgctaacatacgtg 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  33067528 agtaatatttgggaataatgaatctctgaatacgctaacatacgtg 33067573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 142; E-Value: 7e-75
Query Start/End: Original strand, 10 - 155
Target Start/End: Original strand, 33068480 - 33068625
Alignment:
Q  10 caacatccttgacaaacactaacagattttgtttatctcctttatacactatttgaactttgattttctgagcaatgtgaaggttgaaatccatagttgt 109  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33068480 caacatccttgacaaacactaacagattttgttcatctcctttatacactatttgaactttgattttctgagcaatgtgaaggttgaaatccatagttgt 33068579  T
Q  110 agtaatatttgggaataatgaatctctgaatacgctaacatacgtg 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  33068580 agtaatatttgggaataatgaatctctgaatacgctaacatacgtg 33068625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 134; E-Value: 4e-70
Query Start/End: Original strand, 10 - 155
Target Start/End: Original strand, 33069566 - 33069711
Alignment:
Q  10 caacatccttgacaaacactaacagattttgtttatctcctttatacactatttgaactttgattttctgagcaatgtgaaggttgaaatccatagttgt 109  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33069566 caacatccttgataaacactaacagattttgttcatctcctttatacactatttgaactttgattttcttagcaatgtgaaggttgaaatccatagttgt 33069665  T
Q  110 agtaatatttgggaataatgaatctctgaatacgctaacatacgtg 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  33069666 agtaatatttgggaataatgaatctctgaatacgctaacatacgtg 33069711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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