View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2466_high_1 (Length: 462)

Name: NF2466_high_1
Description: NF2466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2466_high_1
NF2466_high_1
[»] chr5 (8 HSPs)
chr5 (33-187)||(37083192-37083341)
chr5 (195-302)||(37083390-37083496)
chr5 (360-447)||(36046650-36046737)
chr5 (199-260)||(12593138-12593199)
chr5 (305-349)||(17193510-17193554)
chr5 (308-364)||(36759896-36759952)
chr5 (202-297)||(4432345-4432440)
chr5 (302-351)||(15007001-15007050)
[»] chr1 (6 HSPs)
chr1 (340-447)||(30363583-30363690)
chr1 (195-237)||(5445291-5445333)
chr1 (198-296)||(38600978-38601075)
chr1 (198-258)||(42831656-42831716)
chr1 (195-234)||(35604627-35604666)
chr1 (117-181)||(19238412-19238476)
[»] chr4 (8 HSPs)
chr4 (198-258)||(49211038-49211098)
chr4 (202-296)||(12447433-12447527)
chr4 (204-297)||(53096622-53096715)
chr4 (198-275)||(11346991-11347068)
chr4 (198-296)||(22628479-22628577)
chr4 (198-252)||(39055173-39055227)
chr4 (304-357)||(10147615-10147668)
chr4 (202-258)||(30865906-30865962)
[»] chr3 (6 HSPs)
chr3 (195-296)||(40861247-40861348)
chr3 (203-259)||(54422740-54422796)
chr3 (303-341)||(34306164-34306202)
chr3 (198-268)||(41211994-41212064)
chr3 (198-250)||(3973457-3973509)
chr3 (198-250)||(3996368-3996420)
[»] chr8 (10 HSPs)
chr8 (91-181)||(26244104-26244195)
chr8 (305-365)||(6590999-6591059)
chr8 (305-365)||(6649289-6649349)
chr8 (202-296)||(6519059-6519151)
chr8 (305-351)||(4467100-4467145)
chr8 (202-260)||(11777718-11777776)
chr8 (202-296)||(28567822-28567916)
chr8 (202-296)||(28575415-28575509)
chr8 (207-296)||(1155152-1155240)
chr8 (305-365)||(6616726-6616786)
[»] chr6 (4 HSPs)
chr6 (344-399)||(33211943-33211998)
chr6 (202-302)||(1946984-1947084)
chr6 (195-251)||(2133311-2133367)
chr6 (304-357)||(29377248-29377301)
[»] chr2 (7 HSPs)
chr2 (195-296)||(17928031-17928132)
chr2 (304-351)||(27910019-27910066)
chr2 (202-263)||(34234899-34234960)
chr2 (303-350)||(3352649-3352696)
chr2 (195-237)||(5147768-5147810)
chr2 (306-349)||(3921869-3921913)
chr2 (323-351)||(27950512-27950540)
[»] chr7 (6 HSPs)
chr7 (198-252)||(23156299-23156353)
chr7 (195-244)||(27334380-27334429)
chr7 (202-296)||(31330409-31330503)
chr7 (198-239)||(4874938-4874979)
chr7 (202-286)||(2008604-2008687)
chr7 (195-251)||(41172570-41172626)
[»] scaffold0036 (2 HSPs)
scaffold0036 (302-351)||(43881-43930)
scaffold0036 (305-351)||(53287-53333)
[»] scaffold0003 (1 HSPs)
scaffold0003 (308-347)||(418435-418474)
[»] scaffold0470 (1 HSPs)
scaffold0470 (305-365)||(6012-6072)


Alignment Details
Target: chr5 (Bit Score: 115; Significance: 3e-58; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 33 - 187
Target Start/End: Original strand, 37083192 - 37083341
Alignment:
Q  33 tacatttttatagaggagtaatatcatcttcaatggggatctcaccatttttatagacttggtgcctattaggtatttttattggggaaaaaatattttg 132  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  37083192 tacatttttatagaggagtgatattatcttcaatggggatctcaccatttatatagacttggtgcctattaggtttttttattggggaaaaaatattttg 37083291  T
Q  133 actacctaatgggacaaaggtctcccataagcatttcaattttaagtgggtttca 187  Q
    ||     ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  37083292 ac-----aatgggacaaaggtctcccataagcatttaaattttaagtgggtttca 37083341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 195 - 302
Target Start/End: Original strand, 37083390 - 37083496
Alignment:
Q  195 aatattaaaatgtaatgatatagagttattgataactgattaacgggtctcatttaaggaatttgtatgtgatgatgggttaaagggattgaatgcttat 294  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||| ||||| ||||||| |||||||||||||||    
T  37083390 aatattgaaatgtaatgatatagagttattgattactgattaacgggtttcatttaagaaatttgtatgtaatgat-ggttaaaaggattgaatgcttat 37083488  T
Q  295 taatatta 302  Q
    ||||||||    
T  37083489 taatatta 37083496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 360 - 447
Target Start/End: Complemental strand, 36046737 - 36046650
Alignment:
Q  360 ttttgatcattgaatgtttacttcgttgttatattaatttacggatgtatcgaaattacgaataaatttacatgtgtctattttatta 447  Q
    ||||||||||| |||||| | |||||||||||||| |||||| |||||||| |||||||||||||||||||| |||| ||||||||||    
T  36046737 ttttgatcattaaatgttcatttcgttgttatattgatttacagatgtatcaaaattacgaataaatttacaagtgtttattttatta 36046650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 199 - 260
Target Start/End: Original strand, 12593138 - 12593199
Alignment:
Q  199 ttaaaatgtaatgatatagagttattgataactgattaacgggtctcatttaaggaatttgt 260  Q
    |||||||||||||||||| |||||||||||| ||||||   ||||||||||||| |||||||    
T  12593138 ttaaaatgtaatgatataaagttattgataattgattagttggtctcatttaagaaatttgt 12593199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 349
Target Start/End: Original strand, 17193510 - 17193554
Alignment:
Q  305 cagtggcgttgccgggaccctagatcagggggttcaaacttttga 349  Q
    ||||||||||||  |||||||||||||||||||||||||||||||    
T  17193510 cagtggcgttgctaggaccctagatcagggggttcaaacttttga 17193554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 308 - 364
Target Start/End: Original strand, 36759896 - 36759952
Alignment:
Q  308 tggcgttgccgggaccctagatcagggggttcaaacttttgaacgttcaaacttttg 364  Q
    |||||| ||| ||||||||| ||| ||||||||||||||||| ||||||||| ||||    
T  36759896 tggcgtagccaggaccctaggtcaaggggttcaaacttttgagcgttcaaacatttg 36759952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 297
Target Start/End: Original strand, 4432345 - 4432440
Alignment:
Q  202 aaatgtaatgatatagagttattgataactgattaacgggtctcatttaaggaatttgtatgtgatgatgggttaaagggattgaatgcttattaa 297  Q
    ||||||||| ||||| ||||||||||| ||||| || |  ||||||||||| ||||| | || |||| || ||| |||||||||||| ||| ||||    
T  4432345 aaatgtaattatataaagttattgatagctgatcaatgaatctcatttaagaaatttttgtgagatgctgcgtttaagggattgaattctttttaa 4432440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 351
Target Start/End: Original strand, 15007001 - 15007050
Alignment:
Q  302 aggcagtggcgttgccgggaccctagatcagggggttcaaacttttgaac 351  Q
    ||||||| |||||||| |||||||| | |||||||||||||| |||||||    
T  15007001 aggcagtagcgttgccaggaccctaaagcagggggttcaaacctttgaac 15007050  T

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Target: chr1 (Bit Score: 88; Significance: 4e-42; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 340 - 447
Target Start/End: Original strand, 30363583 - 30363690
Alignment:
Q  340 aaacttttgaacgttcaaacttttgatcattgaatgtttacttcgttgttatattaatttacggatgtatcgaaattacgaataaatttacatgtgtcta 439  Q
    |||||||||||||||| || |||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  30363583 aaacttttgaacgttctaattttttattattgaatgtttacttcgttgttatattaatttacggatgtatcgaaattatgaataaatttacatgtgtcta 30363682  T
Q  440 ttttatta 447  Q
    ||||||||    
T  30363683 ttttatta 30363690  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 195 - 237
Target Start/End: Complemental strand, 5445333 - 5445291
Alignment:
Q  195 aatattaaaatgtaatgatatagagttattgataactgattaa 237  Q
    |||||| |||||||||||||||||||||||||||| |||||||    
T  5445333 aatattgaaatgtaatgatatagagttattgataaatgattaa 5445291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 296
Target Start/End: Complemental strand, 38601075 - 38600978
Alignment:
Q  198 attaaaatgtaatgatatagagttattgataactgattaacgggtctcatttaaggaatttgtatgtgatgatgggttaaagggattgaatgcttatta 296  Q
    ||||||||||||||||||| |||||||||||| ||||||  ||||| |||||||  ||||||| || |||| | | || |||||||||| | |||||||    
T  38601075 attaaaatgtaatgatataaagttattgataattgattagtgggtc-catttaaaaaatttgtgtgagatgcttgattgaagggattgagtacttatta 38600978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 198 - 258
Target Start/End: Original strand, 42831656 - 42831716
Alignment:
Q  198 attaaaatgtaatgatatagagttattgataactgattaacgggtctcatttaaggaattt 258  Q
    ||||||||||||||||||| | |||||||||  ||||||| || ||||||||||| |||||    
T  42831656 attaaaatgtaatgatataaaattattgatagttgattaatggatctcatttaagaaattt 42831716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 234
Target Start/End: Complemental strand, 35604666 - 35604627
Alignment:
Q  195 aatattaaaatgtaatgatatagagttattgataactgat 234  Q
    |||||| |||||||||||||||||||||||||||| ||||    
T  35604666 aatattgaaatgtaatgatatagagttattgataaatgat 35604627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 181
Target Start/End: Complemental strand, 19238476 - 19238412
Alignment:
Q  117 gggaaaaaatattttgactacctaatgggacaaaggtctcccataagcatttcaattttaagtgg 181  Q
    ||||||||||||||||| ||||||| | |||| ||||||| | ||||||||| ||| | ||||||    
T  19238476 gggaaaaaatattttgagtacctaacgagacataggtctcacttaagcattttaatatcaagtgg 19238412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 198 - 258
Target Start/End: Original strand, 49211038 - 49211098
Alignment:
Q  198 attaaaatgtaatgatatagagttattgataactgattaacgggtctcatttaaggaattt 258  Q
    ||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||    
T  49211038 attaaaatgtaatgatataaagttattgataattgattaatgggtctcatttaaggaattt 49211098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 202 - 296
Target Start/End: Original strand, 12447433 - 12447527
Alignment:
Q  202 aaatgtaatgatatagagttattgataactgattaacgggtctcatttaaggaatttgtatgtgatgatgggttaaagggattgaatgcttatta 296  Q
    ||||||||||||||| |||||||||||  ||||||  |||||| ||||||| ||||| | || |||| ||||||||| ||||||| | |||||||    
T  12447433 aaatgtaatgatataaagttattgatagttgattagtgggtcttatttaagaaatttttgtgagatgctgggttaaaaggattgagttcttatta 12447527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 204 - 297
Target Start/End: Complemental strand, 53096715 - 53096622
Alignment:
Q  204 atgtaatgatatagagttattgataactgattaacgggtctcatttaaggaatttgtatgtgatgatgggttaaagggattgaatgcttattaa 297  Q
    ||||||| ||||| |||||||||||  ||||||   |||| |||||||| ||||||| || |||| ||||||||||||||||| | ||||||||    
T  53096715 atgtaataatataaagttattgatagttgattagttggtcccatttaagaaatttgtgtgagatgttgggttaaagggattgagttcttattaa 53096622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 198 - 275
Target Start/End: Original strand, 11346991 - 11347068
Alignment:
Q  198 attaaaatgtaatgatatagagttattgataactgattaacgggtctcatttaaggaatttgtatgtgatgatgggtt 275  Q
    |||||||| |||||||||| | ||||| |||| ||||||| | |||||||||||| ||||||| || |||| ||||||    
T  11346991 attaaaatataatgatataaaattattaataattgattaatgcgtctcatttaagaaatttgtgtgagatgctgggtt 11347068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 296
Target Start/End: Original strand, 22628479 - 22628577
Alignment:
Q  198 attaaaatgtaatgatatagagttattgataactgattaacgggtctcatttaaggaatttgtatgtgatgatgggttaaagggattgaatgcttatta 296  Q
    ||||||||||||||||||| |||||||||||  ||||||  | ||| |||||||  ||||||| ||||||  ||||| | || |||||| || ||||||    
T  22628479 attaaaatgtaatgatataaagttattgatagttgattagtgagtcccatttaaaaaatttgtgtgtgatattgggtcagagagattgagtgtttatta 22628577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 252
Target Start/End: Original strand, 39055173 - 39055227
Alignment:
Q  198 attaaaatgtaatgatatagagttattgataactgattaacgggtctcatttaag 252  Q
    ||||||||||||||||||| |||||||||||  ||||||  |||| |||||||||    
T  39055173 attaaaatgtaatgatataaagttattgatagttgattagtgggtttcatttaag 39055227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 357
Target Start/End: Original strand, 10147615 - 10147668
Alignment:
Q  304 gcagtggcgttgccgggaccctagatcagggggttcaaacttttgaacgttcaa 357  Q
    |||||||||||||| ||||||| | | |||||||||||||||| |||| |||||    
T  10147615 gcagtggcgttgccaggaccctgggttagggggttcaaactttcgaactttcaa 10147668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 258
Target Start/End: Original strand, 30865906 - 30865962
Alignment:
Q  202 aaatgtaatgatatagagttattgataactgattaacgggtctcatttaaggaattt 258  Q
    ||||||||||||||| |||||||||||  ||||||  | |||||||||||| |||||    
T  30865906 aaatgtaatgatataaagttattgatagttgattagtgagtctcatttaagaaattt 30865962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 195 - 296
Target Start/End: Complemental strand, 40861348 - 40861247
Alignment:
Q  195 aatattaaaatgtaatgatatagagttattgataactgattaacgggtctcatttaaggaatttgtatgtgatgatgggttaaagggattgaatgcttat 294  Q
    |||||| ||| |||||||| ||||||||||||||| ||||||| | ||||| |||||| |||||||||| |||  | ||||| || |||||||| |||||    
T  40861348 aatattgaaacgtaatgatgtagagttattgataaatgattaatgtgtctcgtttaagaaatttgtatgagatttttggttagagagattgaatacttat 40861249  T
Q  295 ta 296  Q
    ||    
T  40861248 ta 40861247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 203 - 259
Target Start/End: Original strand, 54422740 - 54422796
Alignment:
Q  203 aatgtaatgatatagagttattgataactgattaacgggtctcatttaaggaatttg 259  Q
    |||||||||||||| | |||||||||| ||||||  |||||||||||||| ||||||    
T  54422740 aatgtaatgatataaaattattgataattgattagtgggtctcatttaagaaatttg 54422796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 341
Target Start/End: Original strand, 34306164 - 34306202
Alignment:
Q  303 ggcagtggcgttgccgggaccctagatcagggggttcaa 341  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  34306164 ggcagtggcgttgccaggaccctagagcagggggttcaa 34306202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 268
Target Start/End: Original strand, 41211994 - 41212064
Alignment:
Q  198 attaaaatgtaatgatatagagttattgataactgattaacgggtctcatttaaggaatttgtatgtgatg 268  Q
    ||||||||||||||||||| |||||||||||  ||||||    |||||||||||| || ||||||| ||||    
T  41211994 attaaaatgtaatgatataaagttattgatagttgattagtatgtctcatttaagaaacttgtatgagatg 41212064  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 250
Target Start/End: Complemental strand, 3973509 - 3973457
Alignment:
Q  198 attaaaatgtaatgatatagagttattgataactgattaacgggtctcattta 250  Q
    ||||||||||||||||||| | ||||||||   ||||||||| ||||||||||    
T  3973509 attaaaatgtaatgatataaatttattgatggttgattaacgagtctcattta 3973457  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 250
Target Start/End: Original strand, 3996368 - 3996420
Alignment:
Q  198 attaaaatgtaatgatatagagttattgataactgattaacgggtctcattta 250  Q
    ||||||||||||||||||| | ||||||||   ||||||||| ||||||||||    
T  3996368 attaaaatgtaatgatataaatttattgatggttgattaacgagtctcattta 3996420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 91 - 181
Target Start/End: Original strand, 26244104 - 26244195
Alignment:
Q  91 ttggtgcctattaggtatttttattggggaaaaaa-tattttgactacctaatgggacaaaggtctcccataagcatttcaattttaagtgg 181  Q
    ||||||||||| || || |  |||||||||||||| ||||||||  || |||||||||||| ||||| | ||||||||||||||||||||||    
T  26244104 ttggtgcctatgagatactcctattggggaaaaaagtattttgaacacttaatgggacaaaagtctcacttaagcatttcaattttaagtgg 26244195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 365
Target Start/End: Original strand, 6590999 - 6591059
Alignment:
Q  305 cagtggcgttgccgggaccctagatcagggggttcaaacttttgaacgttcaaacttttga 365  Q
    ||||||||| | | ||||||||| |||| |||||||||||||||| ||||||||| |||||    
T  6590999 cagtggcgtagtcaggaccctaggtcagagggttcaaacttttgagcgttcaaacatttga 6591059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 365
Target Start/End: Original strand, 6649289 - 6649349
Alignment:
Q  305 cagtggcgttgccgggaccctagatcagggggttcaaacttttgaacgttcaaacttttga 365  Q
    ||||||||| | | ||| ||||| ||||||||||||||||||||| ||||||||| |||||    
T  6649289 cagtggcgtagtcaggatcctaggtcagggggttcaaacttttgagcgttcaaacatttga 6649349  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 296
Target Start/End: Complemental strand, 6519151 - 6519059
Alignment:
Q  202 aaatgtaatgatatagagttattgataactgattaacgggtctcatttaaggaatttgtatgtgatgatgggttaaagggattgaatgcttatta 296  Q
    ||||||||||||||| |||||||||||  ||||||  | |||||||||||| ||||||  || |||| ||||||  || |||||||| |||||||    
T  6519151 aaatgtaatgatataaagttattgatagttgattagtgagtctcatttaagaaatttg--tgagatgctgggttggagagattgaattcttatta 6519059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 351
Target Start/End: Complemental strand, 4467145 - 4467100
Alignment:
Q  305 cagtggcgttgccgggaccctagatcagggggttcaaacttttgaac 351  Q
    ||||||||||||| |||||||||| || |||||||||||||||||||    
T  4467145 cagtggcgttgccaggaccctagagca-ggggttcaaacttttgaac 4467100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 260
Target Start/End: Complemental strand, 11777776 - 11777718
Alignment:
Q  202 aaatgtaatgatatagagttattgataactgattaacgggtctcatttaaggaatttgt 260  Q
    ||||||||||||||| |||||||||||  ||||||   ||||||||||||| |||||||    
T  11777776 aaatgtaatgatataaagttattgatagttgattagtaggtctcatttaagaaatttgt 11777718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 296
Target Start/End: Original strand, 28567822 - 28567916
Alignment:
Q  202 aaatgtaatgatatagagttattgataactgattaacgggtctcatttaaggaatttgtatgtgatgatgggttaaagggattgaatgcttatta 296  Q
    |||| |||||||||| |||||||||||  || ||| || | |||||||||| |||||||||| |||| ||||||  | ||||||| | |||||||    
T  28567822 aaatataatgatataaagttattgatagttgcttatcgtggctcatttaagtaatttgtatgagatgctgggttggaaggattgagtacttatta 28567916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 296
Target Start/End: Original strand, 28575415 - 28575509
Alignment:
Q  202 aaatgtaatgatatagagttattgataactgattaacgggtctcatttaaggaatttgtatgtgatgatgggttaaagggattgaatgcttatta 296  Q
    |||| |||||||||| |||||||||||  || ||| || | |||||||||| |||||||||| |||| ||||||  | ||||||| | |||||||    
T  28575415 aaatataatgatataaagttattgatagttgcttatcgtggctcatttaagtaatttgtatgagatgctgggttggaaggattgagtacttatta 28575509  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 296
Target Start/End: Complemental strand, 1155240 - 1155152
Alignment:
Q  207 taatgatatagagttattgataactgattaacgggtctcatttaaggaatttgtatgtgatgatgggttaaagggattgaatgcttatta 296  Q
    |||||||||| |||||||| ||  |||||||   |||||||||||| ||||||| || |||  ||||||  |||||||||||||||||||    
T  1155240 taatgatataaagttattggtagttgattaatatgtctcatttaagaaatttgtgtgagat-ctgggttggagggattgaatgcttatta 1155152  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 365
Target Start/End: Original strand, 6616726 - 6616786
Alignment:
Q  305 cagtggcgttgccgggaccctagatcagggggttcaaacttttgaacgttcaaacttttga 365  Q
    ||||||||| | | ||||| ||| | ||||||||||||||||||| ||||||||| |||||    
T  6616726 cagtggcgtagtcaggaccttaggttagggggttcaaacttttgagcgttcaaacatttga 6616786  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 344 - 399
Target Start/End: Original strand, 33211943 - 33211998
Alignment:
Q  344 ttttgaacgttcaaacttttgatcattgaatgtttacttcgttgttatattaattt 399  Q
    |||||||||||||||||||| |||||||||||||||||||  ||||||||| ||||    
T  33211943 ttttgaacgttcaaactttttatcattgaatgtttacttcaatgttatattgattt 33211998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 202 - 302
Target Start/End: Complemental strand, 1947084 - 1946984
Alignment:
Q  202 aaatgtaatgatatagagttattgataactgattaacgggtctcatttaaggaatttgtatgtgatgatgggttaaagggattgaatgcttattaatatt 301  Q
    ||||||||||||||| | ||| |||||| ||||||| || ||  | ||||| |||||||||| ||||||| ||| |||| ||||| ||||||||| ||||    
T  1947084 aaatgtaatgatataaaattaatgataattgattaatggatcctacttaagaaatttgtatgagatgatgagttgaaggaattgagtgcttattagtatt 1946985  T
Q  302 a 302  Q
    |    
T  1946984 a 1946984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 2133367 - 2133311
Alignment:
Q  195 aatattaaaatgtaatgatatagagttattgataactgattaacgggtctcatttaa 251  Q
    ||||||||||||||||||||||||||||||||||  | ||||| ||||||| |||||    
T  2133367 aatattaaaatgtaatgatatagagttattgatagataattaatgggtctcgtttaa 2133311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 304 - 357
Target Start/End: Original strand, 29377248 - 29377301
Alignment:
Q  304 gcagtggcgttgccgggaccctagatcagggggttcaaacttttgaacgttcaa 357  Q
    |||||||||||||| ||||||||| | |||||||||||||||| |||| |||||    
T  29377248 gcagtggcgttgccaggaccctaggttagggggttcaaactttcgaactttcaa 29377301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 195 - 296
Target Start/End: Original strand, 17928031 - 17928132
Alignment:
Q  195 aatattaaaatgtaatgatatagagttattgataactgattaacgggtctcatttaaggaatttgtatgtgatgatgggttaaagggattgaatgcttat 294  Q
    ||||||||||| ||||||||| ||||||||||||  ||||||||| ||||| || ||| |||||||  | |||| | |||| |||||||| | |||||||    
T  17928031 aatattaaaatataatgatattgagttattgatatatgattaacgagtctcgttcaagaaatttgtgcgagatgtttggttgaagggattaagtgcttat 17928130  T
Q  295 ta 296  Q
    ||    
T  17928131 ta 17928132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 304 - 351
Target Start/End: Original strand, 27910019 - 27910066
Alignment:
Q  304 gcagtggcgttgccgggaccctagatcagggggttcaaacttttgaac 351  Q
    |||||||||||||| |||||||||| |||||||||||||| |||||||    
T  27910019 gcagtggcgttgccaggaccctagagcagggggttcaaacctttgaac 27910066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 202 - 263
Target Start/End: Original strand, 34234899 - 34234960
Alignment:
Q  202 aaatgtaatgatatagagttattgataactgattaacgggtctcatttaaggaatttgtatg 263  Q
    ||||||||||||||| |||||||||||| ||||||  |||||| ||||||  ||||||||||    
T  34234899 aaatgtaatgatataaagttattgataattgattagtgggtctaatttaataaatttgtatg 34234960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 350
Target Start/End: Complemental strand, 3352696 - 3352649
Alignment:
Q  303 ggcagtggcgttgccgggaccctagatcagggggttcaaacttttgaa 350  Q
    ||||||||||||||| ||||||||| | ||||||||| ||||||||||    
T  3352696 ggcagtggcgttgccaggaccctaggttagggggttcgaacttttgaa 3352649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 237
Target Start/End: Original strand, 5147768 - 5147810
Alignment:
Q  195 aatattaaaatgtaatgatatagagttattgataactgattaa 237  Q
    |||||| ||||||||||||||||||||||| |||| |||||||    
T  5147768 aatattgaaatgtaatgatatagagttattaataaatgattaa 5147810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 349
Target Start/End: Original strand, 3921869 - 3921913
Alignment:
Q  306 agtggcgttgccgggaccctagatca-gggggttcaaacttttga 349  Q
    |||||||||||| ||||||| ||||| ||||||||||||||||||    
T  3921869 agtggcgttgccaggaccctggatcaggggggttcaaacttttga 3921913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 351
Target Start/End: Original strand, 27950512 - 27950540
Alignment:
Q  323 cctagatcagggggttcaaacttttgaac 351  Q
    |||||||||||||||||||||||||||||    
T  27950512 cctagatcagggggttcaaacttttgaac 27950540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 252
Target Start/End: Complemental strand, 23156353 - 23156299
Alignment:
Q  198 attaaaatgtaatgatatagagttattgataactgattaacgggtctcatttaag 252  Q
    ||||||||||| ||||||| |||||||||||  ||||||| ||||||||||||||    
T  23156353 attaaaatgtagtgatataaagttattgatagttgattaatgggtctcatttaag 23156299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 195 - 244
Target Start/End: Original strand, 27334380 - 27334429
Alignment:
Q  195 aatattaaaatgtaatgatatagagttattgataactgattaacgggtct 244  Q
    |||||| |||||||||||||||||||||||||||  ||||||| ||||||    
T  27334380 aatattgaaatgtaatgatatagagttattgatagatgattaatgggtct 27334429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 296
Target Start/End: Original strand, 31330409 - 31330503
Alignment:
Q  202 aaatgtaatgatatagagttattgataactgattaacgggtctcatttaaggaatttgtatgtgatgatgggttaaagggattgaatgcttatta 296  Q
    ||||||||||||||| | |||||||||  ||||||    |||||||||||| ||||||| ||  ||| ||||||  ||||||||| |||||||||    
T  31330409 aaatgtaatgatatatacttattgatagttgattagtacgtctcatttaagaaatttgtgtgaaatgttgggttggagggattgagtgcttatta 31330503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 239
Target Start/End: Complemental strand, 4874979 - 4874938
Alignment:
Q  198 attaaaatgtaatgatatagagttattgataactgattaacg 239  Q
    ||||||||||||||||||| |||||||||||  |||||||||    
T  4874979 attaaaatgtaatgatataaagttattgatagttgattaacg 4874938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 286
Target Start/End: Original strand, 2008604 - 2008687
Alignment:
Q  202 aaatgtaatgatatagagttattgataactgattaacgggtctcatttaaggaatttgtatgtgatgatgggttaaagggattga 286  Q
    |||||||||| |||| | |||||||||  ||||||||||||  |||||||| ||||||| || |||  ||||||| |||||||||    
T  2008604 aaatgtaatggtataaaattattgatagttgattaacgggttccatttaagaaatttgtgtgagat-ctgggttagagggattga 2008687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 41172626 - 41172570
Alignment:
Q  195 aatattaaaatgtaatgatatagagttattgataactgattaacgggtctcatttaa 251  Q
    |||||| ||||||||||||||| ||||| |||||| ||||||  | |||||||||||    
T  41172626 aatattgaaatgtaatgatataaagttaatgataattgattagtgtgtctcatttaa 41172570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 302 - 351
Target Start/End: Original strand, 43881 - 43930
Alignment:
Q  302 aggcagtggcgttgccgggaccctagatcagggggttcaaacttttgaac 351  Q
    ||||||||| || ||| ||| |||||||||||||||||||||||||||||    
T  43881 aggcagtggtgtagccaggatcctagatcagggggttcaaacttttgaac 43930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 351
Target Start/End: Original strand, 53287 - 53333
Alignment:
Q  305 cagtggcgttgccgggaccctagatcagggggttcaaacttttgaac 351  Q
    ||||||||| ||| ||| |||||||||||||| ||||||||||||||    
T  53287 cagtggcgtagccaggatcctagatcagggggctcaaacttttgaac 53333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 347
Target Start/End: Complemental strand, 418474 - 418435
Alignment:
Q  308 tggcgttgccgggaccctagatcagggggttcaaactttt 347  Q
    |||||||||| ||||||| |||||||||||||||||||||    
T  418474 tggcgttgccaggaccctggatcagggggttcaaactttt 418435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 365
Target Start/End: Original strand, 6012 - 6072
Alignment:
Q  305 cagtggcgttgccgggaccctagatcagggggttcaaacttttgaacgttcaaacttttga 365  Q
    ||||||||| | | ||||| ||| | ||||||||||||||||||| ||||||||| |||||    
T  6012 cagtggcgtagtcaggaccttaggttagggggttcaaacttttgagcgttcaaacatttga 6072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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